HEADER TRANSFERASE 14-FEB-05 1YV2 TITLE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE GENOTYPE 2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GENOTYPE 2A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS NS5B POLYMERASE GENOTYPE 2A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.K.BISWAL,M.M.CHERNEY,M.WANG,L.CHAN,C.G.YANNOPOULOS,D.BILIMORIA, AUTHOR 2 O.NICOLAS,J.BEDARD,M.N.G.JAMES REVDAT 5 13-NOV-24 1YV2 1 REMARK REVDAT 4 13-JUL-11 1YV2 1 VERSN REVDAT 3 24-FEB-09 1YV2 1 VERSN REVDAT 2 10-MAY-05 1YV2 1 JRNL REVDAT 1 22-MAR-05 1YV2 0 JRNL AUTH B.K.BISWAL,M.M.CHERNEY,M.WANG,L.CHAN,C.G.YANNOPOULOS, JRNL AUTH 2 D.BILIMORIA,O.NICOLAS,J.BEDARD,M.N.G.JAMES JRNL TITL CRYSTAL STRUCTURES OF THE RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 GENOTYPE 2A OF HEPATITIS C VIRUS REVEAL TWO CONFORMATIONS JRNL TITL 3 AND SUGGEST MECHANISMS OF INHIBITION BY NON-NUCLEOSIDE JRNL TITL 4 INHIBITORS JRNL REF J.BIOL.CHEM. V. 280 18202 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15746101 JRNL DOI 10.1074/JBC.M413410200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3164793.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 27506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1347 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4144 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -2.12000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 44.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GOL_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000031951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 0.2M AMMONIUM SULPHATE, REMARK 280 80MM SODIUM CITRATE PH 6.0, 7% GLYCEROL, 4% 1,6 HEXANEDIOL AND 1% REMARK 280 BENZAMIDINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.06950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.06950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.38250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 107.51850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.38250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 107.51850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.06950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.38250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 107.51850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.06950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.38250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 107.51850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 879 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 549 REMARK 465 TRP A 550 REMARK 465 PHE A 551 REMARK 465 THR A 552 REMARK 465 VAL A 553 REMARK 465 GLY A 554 REMARK 465 ALA A 555 REMARK 465 GLY A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 ASP A 559 REMARK 465 ILE A 560 REMARK 465 TYR A 561 REMARK 465 HIS A 562 REMARK 465 SER A 563 REMARK 465 VAL A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 757 O HOH A 757 3655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 447 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 TYR A 448 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 25 42.00 -80.45 REMARK 500 LEU A 26 -32.22 -141.81 REMARK 500 LEU A 30 -68.19 -1.75 REMARK 500 ASN A 35 85.07 -160.96 REMARK 500 ALA A 97 124.55 -38.06 REMARK 500 THR A 132 108.01 -52.51 REMARK 500 PHE A 193 24.90 -74.56 REMARK 500 LEU A 260 -62.61 -135.90 REMARK 500 SER A 347 51.39 70.80 REMARK 500 SER A 367 -5.27 77.67 REMARK 500 VAL A 400 -70.03 -78.56 REMARK 500 VAL A 424 -72.67 -104.07 REMARK 500 LYS A 535 -76.16 -62.50 REMARK 500 LEU A 536 100.46 81.49 REMARK 500 PRO A 540 44.14 -74.96 REMARK 500 ARG A 543 10.56 -160.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 448 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 572 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 574 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 578 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YUY RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE GENOTYPE 2A REMARK 999 REMARK 999 SEQUENCE AUTHOR STATES THAT A PCR FUSION APPROACH WAS USED, AS REMARK 999 IT IS WIDELY USED TO CONSTRUCT GENES WHEN NO ACTUAL TEMPLATE IS REMARK 999 AVAILABLE (EG BLIGHT JK ET AL. SCIENCE. 2000 DEC 8;290(5498): REMARK 999 1972-4) TO BUILT A CONSENSUS CDNA OF THE HCV POLYMERASE GENOTYPE REMARK 999 2A. THE CONSENSUS SEQUENCE WAS BASED ON THE ALIGNMENT OF AT REMARK 999 LEAST TEN COMPLETE SEQUENCES AVAILABLE IN THE NCBI DATABANK. THE REMARK 999 GENE WAS PRODUCED COULD BE CONSIDERED SYNTHETIC AS IT WAS BASED REMARK 999 ON THESE APPROXIMATELY 10 POLYMERASE SEQUENCES (AND WILL REMARK 999 THEREFORE NOT CORRESPOND TO ANY SPECIFIC POLYMERASE SEQUENCE REMARK 999 FOUND IN NATURE) AND THE CODON USAGE WAS ALSO MODIFIED TO REMARK 999 MAXIMIZE THE EXPRESSION IN BACTERIA. DBREF 1YV2 A 1 570 UNP P26660 POLG_HCVJ6 2443 3012 SEQADV 1YV2 PRO A 25 UNP P26660 SER 2467 SEE REMARK 999 SEQADV 1YV2 THR A 150 UNP P26660 ALA 2592 SEE REMARK 999 SEQADV 1YV2 ALA A 156 UNP P26660 PRO 2598 SEE REMARK 999 SEQADV 1YV2 LYS A 212 UNP P26660 ARG 2654 SEE REMARK 999 SEQADV 1YV2 VAL A 309 UNP P26660 ILE 2751 SEE REMARK 999 SEQADV 1YV2 PRO A 391 UNP P26660 SER 2833 SEE REMARK 999 SEQRES 1 A 570 SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 570 CYS SER PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO LEU SEQRES 3 A 570 SER ASN SER LEU LEU ARG TYR HIS ASN LYS VAL TYR CYS SEQRES 4 A 570 THR THR SER LYS SER ALA SER LEU ARG ALA LYS LYS VAL SEQRES 5 A 570 THR PHE ASP ARG MET GLN VAL LEU ASP ALA TYR TYR ASP SEQRES 6 A 570 SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS VAL SEQRES 7 A 570 SER ALA ARG LEU LEU THR LEU GLU GLU ALA CYS GLN LEU SEQRES 8 A 570 THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE GLY SEQRES 9 A 570 ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL ASN SEQRES 10 A 570 HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SER SEQRES 11 A 570 GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN GLU SEQRES 12 A 570 VAL PHE CYS VAL ASP PRO THR LYS GLY GLY LYS LYS ALA SEQRES 13 A 570 ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 570 CYS GLU LYS MET ALA LEU TYR ASP VAL THR GLN LYS LEU SEQRES 15 A 570 PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN TYR SEQRES 16 A 570 SER PRO ALA GLN ARG VAL GLU PHE LEU LEU LYS ALA TRP SEQRES 17 A 570 ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 570 ARG CYS PHE ASP SER THR VAL THR GLU ARG ASP ILE ARG SEQRES 19 A 570 THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO GLU SEQRES 20 A 570 GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG LEU SEQRES 21 A 570 TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SER SEQRES 22 A 570 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 570 THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS ALA SEQRES 24 A 570 LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO THR SEQRES 25 A 570 MET LEU VAL CYS GLY ASP ASP LEU VAL VAL ILE SER GLU SEQRES 26 A 570 SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG ALA SEQRES 27 A 570 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 570 ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 570 SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO GLN SEQRES 30 A 570 GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 570 PRO ILE ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SER SEQRES 32 A 570 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE GLN TYR ALA SEQRES 33 A 570 PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS PHE SEQRES 34 A 570 PHE SER ILE LEU MET ALA GLN ASP THR LEU ASP GLN ASN SEQRES 35 A 570 LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER VAL SER SEQRES 36 A 570 PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 570 LEU ASP ALA PHE SER LEU HIS THR TYR THR PRO HIS GLU SEQRES 38 A 570 LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU GLY ALA SEQRES 39 A 570 PRO PRO LEU ARG ALA TRP LYS SER ARG ALA ARG ALA VAL SEQRES 40 A 570 ARG ALA SER LEU ILE SER ARG GLY GLY ARG ALA ALA VAL SEQRES 41 A 570 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 A 570 LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU LEU ASP SEQRES 43 A 570 LEU SER SER TRP PHE THR VAL GLY ALA GLY GLY GLY ASP SEQRES 44 A 570 ILE TYR HIS SER VAL SER ARG ALA ARG PRO ARG HET SO4 A 571 5 HET SO4 A 572 5 HET SO4 A 573 5 HET SO4 A 574 5 HET SO4 A 575 5 HET SO4 A 576 5 HET SO4 A 577 5 HET GOL A 578 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *339(H2 O) HELIX 1 1 THR A 41 LYS A 43 5 3 HELIX 2 2 SER A 44 THR A 53 1 10 HELIX 3 3 ASP A 61 SER A 76 1 16 HELIX 4 4 THR A 84 LEU A 91 1 8 HELIX 5 5 GLY A 104 SER A 110 1 7 HELIX 6 6 SER A 112 ASP A 129 1 18 HELIX 7 7 ASP A 164 GLY A 188 1 25 HELIX 8 8 ALA A 189 TYR A 195 5 7 HELIX 9 9 SER A 196 GLU A 210 1 15 HELIX 10 10 CYS A 223 VAL A 228 1 6 HELIX 11 11 THR A 229 GLN A 241 1 13 HELIX 12 12 PRO A 246 LEU A 260 1 15 HELIX 13 13 THR A 286 GLY A 307 1 22 HELIX 14 14 GLY A 328 TYR A 346 1 19 HELIX 15 15 ASP A 359 ILE A 363 5 5 HELIX 16 16 PRO A 388 ARG A 401 1 14 HELIX 17 17 ASN A 406 TYR A 415 1 10 HELIX 18 18 THR A 418 VAL A 424 1 7 HELIX 19 19 VAL A 424 ASP A 437 1 14 HELIX 20 20 SER A 455 LEU A 457 5 3 HELIX 21 21 ASP A 458 GLY A 468 1 11 HELIX 22 22 LEU A 469 SER A 473 5 5 HELIX 23 23 THR A 478 GLY A 493 1 16 HELIX 24 24 PRO A 496 ARG A 514 1 19 HELIX 25 25 GLY A 515 PHE A 526 1 12 HELIX 26 26 ASN A 527 VAL A 530 5 4 SHEET 1 A 5 TYR A 4 TRP A 6 0 SHEET 2 A 5 SER A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 A 5 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 4 A 5 THR A 136 ALA A 140 1 N ILE A 138 O PHE A 267 SHEET 5 A 5 LEU A 159 TYR A 162 -1 O TYR A 162 N THR A 137 SHEET 1 B 2 ASN A 28 SER A 29 0 SHEET 2 B 2 ARG A 32 TYR A 33 -1 O ARG A 32 N SER A 29 SHEET 1 C 2 VAL A 37 CYS A 39 0 SHEET 2 C 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 D 3 PRO A 214 ASP A 220 0 SHEET 2 D 3 ASP A 319 GLU A 325 -1 O LEU A 320 N TYR A 219 SHEET 3 D 3 THR A 312 CYS A 316 -1 N CYS A 316 O ASP A 319 SHEET 1 E 2 ASN A 369 LEU A 374 0 SHEET 2 E 2 ARG A 380 THR A 385 -1 O THR A 385 N ASN A 369 SHEET 1 F 2 LEU A 443 MET A 447 0 SHEET 2 F 2 SER A 450 VAL A 454 -1 O VAL A 454 N LEU A 443 SSBOND 1 CYS A 316 CYS A 366 1555 1555 2.03 SITE 1 AC1 6 PRO A 93 SER A 96 ARG A 168 LYS A 172 SITE 2 AC1 6 HOH A 710 HOH A 711 SITE 1 AC2 7 PRO A 94 HIS A 95 GLY A 104 ALA A 105 SITE 2 AC2 7 LYS A 106 HOH A 719 HOH A 788 SITE 1 AC3 3 HIS A 34 ASN A 35 LYS A 36 SITE 1 AC4 5 TRP A 6 ALA A 9 SER A 46 ALA A 49 SITE 2 AC4 5 LYS A 50 SITE 1 AC5 2 GLY A 516 ARG A 517 SITE 1 AC6 4 GLN A 131 TYR A 276 ARG A 278 HOH A 873 SITE 1 AC7 4 ARG A 505 VAL A 530 LYS A 531 THR A 532 SITE 1 AC8 4 THR A 7 ALA A 9 GLU A 128 GLN A 272 CRYST1 60.765 215.037 124.139 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008055 0.00000