HEADER PLANT PROTEIN 15-FEB-05 1YVA TITLE NMR SOLUTION STRUCTURE OF CRAMBIN IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAMBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; SOURCE 3 ORGANISM_TAXID: 3721; SOURCE 4 STRAIN: SUBSP. ABYSSINICA; SOURCE 5 GENE: THI2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A/SN_CRAMBIN KEYWDS CRAMBIN, DPC, MICELLES, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.-C.AHN,J.L.MARKLEY REVDAT 4 02-MAR-22 1YVA 1 REMARK REVDAT 3 24-FEB-09 1YVA 1 VERSN REVDAT 2 11-APR-06 1YVA 1 JRNL REVDAT 1 07-MAR-06 1YVA 0 JRNL AUTH H.-C.AHN,N.JURANIC,S.MACURA,J.L.MARKLEY JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE WATER-INSOLUBLE PROTEIN JRNL TITL 2 CRAMBIN IN DODECYLPHOSPHOCHOLINE MICELLES AND ITS MINIMAL JRNL TITL 3 SOLVENT-EXPOSED SURFACE JRNL REF J.AM.CHEM.SOC. V. 128 4398 2006 JRNL REFN ISSN 0002-7863 JRNL PMID 16569017 JRNL DOI 10.1021/JA057773D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3, XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS (XPLOR-NIH), SCHWIETERS (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YVA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031959. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM CRAMBIN U-15N,13C, PH REMARK 210 6.0, 20 MM PHOSPHATE BUFFER, REMARK 210 300MM DPC, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 THR A 1 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 12 H VAL A 15 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -169.35 172.57 REMARK 500 1 PRO A 19 -76.48 -73.65 REMARK 500 1 GLU A 23 -28.07 -34.74 REMARK 500 1 CYS A 32 166.45 -43.79 REMARK 500 1 ALA A 38 12.13 -148.21 REMARK 500 1 PRO A 41 -165.44 -74.06 REMARK 500 2 PRO A 5 30.86 -78.63 REMARK 500 2 GLU A 23 -28.23 -35.54 REMARK 500 2 ALA A 38 7.35 -152.94 REMARK 500 2 CYS A 40 -163.25 37.64 REMARK 500 2 ALA A 45 30.37 -84.99 REMARK 500 3 PRO A 5 47.57 -76.18 REMARK 500 3 SER A 6 121.22 179.47 REMARK 500 3 GLU A 23 -29.20 -32.74 REMARK 500 3 ALA A 38 17.81 -174.20 REMARK 500 3 CYS A 40 142.61 56.14 REMARK 500 3 ALA A 45 30.35 -85.80 REMARK 500 4 GLU A 23 -28.32 -35.13 REMARK 500 4 CYS A 32 174.31 -46.15 REMARK 500 4 CYS A 40 163.53 -40.57 REMARK 500 4 ALA A 45 32.55 -89.40 REMARK 500 5 PRO A 5 25.26 -77.74 REMARK 500 5 SER A 6 164.95 174.25 REMARK 500 5 PRO A 19 -71.90 -74.80 REMARK 500 5 GLU A 23 -23.37 -39.98 REMARK 500 5 CYS A 32 169.97 -44.17 REMARK 500 5 ALA A 38 -48.65 -154.90 REMARK 500 5 CYS A 40 177.73 47.48 REMARK 500 5 PRO A 41 -157.56 -73.16 REMARK 500 5 ALA A 45 31.38 -89.11 REMARK 500 6 SER A 6 175.09 172.43 REMARK 500 6 ASN A 12 -71.05 -59.85 REMARK 500 6 GLU A 23 -31.77 -33.03 REMARK 500 6 CYS A 32 175.80 -46.77 REMARK 500 6 ALA A 38 32.53 -85.37 REMARK 500 6 CYS A 40 154.75 -36.19 REMARK 500 7 SER A 6 -176.17 -179.90 REMARK 500 7 ALA A 9 -70.22 -62.74 REMARK 500 7 GLU A 23 -27.41 -36.34 REMARK 500 7 CYS A 32 -177.62 -50.01 REMARK 500 7 ALA A 38 -6.84 74.60 REMARK 500 7 PRO A 41 -165.03 -70.38 REMARK 500 8 SER A 6 -171.50 175.14 REMARK 500 8 PRO A 19 -85.93 -70.26 REMARK 500 8 GLU A 23 -28.18 -34.03 REMARK 500 8 CYS A 32 172.92 -45.93 REMARK 500 8 CYS A 40 165.87 -43.45 REMARK 500 8 ALA A 45 30.80 -87.89 REMARK 500 9 SER A 6 161.95 176.41 REMARK 500 9 PRO A 19 -81.93 -71.75 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 10 0.23 SIDE CHAIN REMARK 500 1 ARG A 17 0.28 SIDE CHAIN REMARK 500 2 ARG A 10 0.28 SIDE CHAIN REMARK 500 2 ARG A 17 0.13 SIDE CHAIN REMARK 500 3 ARG A 10 0.28 SIDE CHAIN REMARK 500 3 ARG A 17 0.13 SIDE CHAIN REMARK 500 4 ARG A 10 0.21 SIDE CHAIN REMARK 500 4 ARG A 17 0.31 SIDE CHAIN REMARK 500 5 ARG A 10 0.32 SIDE CHAIN REMARK 500 5 ARG A 17 0.23 SIDE CHAIN REMARK 500 6 ARG A 10 0.26 SIDE CHAIN REMARK 500 6 ARG A 17 0.28 SIDE CHAIN REMARK 500 7 ARG A 10 0.23 SIDE CHAIN REMARK 500 7 ARG A 17 0.18 SIDE CHAIN REMARK 500 8 ARG A 10 0.29 SIDE CHAIN REMARK 500 8 ARG A 17 0.22 SIDE CHAIN REMARK 500 9 ARG A 10 0.18 SIDE CHAIN REMARK 500 9 ARG A 17 0.24 SIDE CHAIN REMARK 500 10 ARG A 10 0.27 SIDE CHAIN REMARK 500 10 ARG A 17 0.26 SIDE CHAIN REMARK 500 11 ARG A 17 0.31 SIDE CHAIN REMARK 500 12 ARG A 10 0.12 SIDE CHAIN REMARK 500 12 ARG A 17 0.25 SIDE CHAIN REMARK 500 13 ARG A 10 0.29 SIDE CHAIN REMARK 500 13 ARG A 17 0.31 SIDE CHAIN REMARK 500 14 ARG A 10 0.23 SIDE CHAIN REMARK 500 14 ARG A 17 0.26 SIDE CHAIN REMARK 500 15 ARG A 10 0.23 SIDE CHAIN REMARK 500 15 ARG A 17 0.28 SIDE CHAIN REMARK 500 16 ARG A 10 0.31 SIDE CHAIN REMARK 500 16 ARG A 17 0.23 SIDE CHAIN REMARK 500 17 ARG A 10 0.14 SIDE CHAIN REMARK 500 17 ARG A 17 0.32 SIDE CHAIN REMARK 500 18 ARG A 10 0.31 SIDE CHAIN REMARK 500 18 ARG A 17 0.32 SIDE CHAIN REMARK 500 19 ARG A 10 0.27 SIDE CHAIN REMARK 500 19 ARG A 17 0.27 SIDE CHAIN REMARK 500 20 ARG A 10 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YV8 RELATED DB: PDB REMARK 900 CRAMBIN IN ORGANIC/AQUEOUS SOLVENT REMARK 900 RELATED ID: 6504 RELATED DB: BMRB DBREF 1YVA A 1 46 UNP P01542 CRAM_CRAAB 1 46 SEQRES 1 A 46 THR THR CYS CYS PRO SER ILE VAL ALA ARG SER ASN PHE SEQRES 2 A 46 ASN VAL CYS ARG LEU PRO GLY THR PRO GLU ALA LEU CYS SEQRES 3 A 46 ALA THR TYR THR GLY CYS ILE ILE ILE PRO GLY ALA THR SEQRES 4 A 46 CYS PRO GLY ASP TYR ALA ASN HELIX 1 1 SER A 6 ARG A 17 1 12 HELIX 2 2 PRO A 22 THR A 30 1 9 SSBOND 1 CYS A 3 CYS A 40 1555 1555 2.02 SSBOND 2 CYS A 4 CYS A 32 1555 1555 2.02 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1