HEADER STRUCTURAL PROTEIN 23-MAR-99 1YVN TITLE THE YEAST ACTIN VAL 159 ASN MUTANT COMPLEX WITH HUMAN GELSOLIN SEGMENT TITLE 2 1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ACTIN); COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 OTHER_DETAILS: MG-ATP BOUND ACTIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (GELSOLIN); COMPND 8 CHAIN: G; COMPND 9 FRAGMENT: FRAGMENT 1; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CA(2+)-BOUND PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: ACT1-159; SOURCE 6 OTHER_DETAILS: THE GENE NAME IS ACT.; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMW172; SOURCE 15 OTHER_DETAILS: SYNTHETIC GENE KEYWDS YEAST, ACTIN, MUTANT V159N, GELSOLIN, ACTIN-BINDING, MG-ATP, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.VOROBIEV,L.D.BELMONT,D.G.DRUBIN,S.C.ALMO REVDAT 5 23-AUG-23 1YVN 1 REMARK LINK REVDAT 4 13-NOV-19 1YVN 1 JRNL SEQADV REVDAT 3 24-FEB-09 1YVN 1 VERSN REVDAT 2 09-MAY-01 1YVN 1 JRNL SOURCE REMARK REVDAT 1 23-MAR-00 1YVN 0 JRNL AUTH S.M.VOROBIEV,L.D.BELMONT,D.D.DRUBIN,C.ALMOS JRNL TITL CRYSTAL STRUCTURE OF YEAST ACTIN V159N MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.D.BELMONT,A.ORLOVA,D.G.DRUBIN,E.H.EGELMAN REMARK 1 TITL A CHANGE IN ACTIN CONFORMATION ASSOCIATED WITH FILAMENT REMARK 1 TITL 2 INSTABILITY AFTER PI RELEASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 29 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9874766 REMARK 1 DOI 10.1073/PNAS.96.1.29 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.J.MCLAUGHLIN,J.T.GOOCH,H.G.MANNHERZ,A.G.WEEDS REMARK 1 TITL STRUCTURE OF GELSOLIN SEGMENT 1-ACTIN COMPLEX AND THE REMARK 1 TITL 2 MECHANISM OF FILAMENT SEVERING. REMARK 1 REF NATURE V. 364 685 1993 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 8395021 REMARK 1 DOI 10.1038/364685A0 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.KABSCH,H.G.MANNHERZ,D.SUCK,E.F.PAI,K.C.HOLMES REMARK 1 TITL ATOMIC STRUCTURE OF THE ACTIN:DNASE I COMPLEX. REMARK 1 REF NATURE V. 347 37 1990 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 2395459 REMARK 1 DOI 10.1038/347037A0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 32577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.82 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.404 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.35 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.736 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : PARAMETER.ELEMENTS REMARK 3 PARAMETER FILE 4 : PARAM.ATP REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : TOPOLOGY.ELEMENTS REMARK 3 TOPOLOGY FILE 4 : TOPOLOGY.ATP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0702 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : 2.950 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1YAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.60 M (NH4)2SO4, 2 MM MG REMARK 280 -ATP, PH=8.0., PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.04900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.04900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.03850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 377 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 VAL A 45 CG1 CG2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 MET A 110 CG SD CE REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 LYS G 111 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 43 -45.31 -139.38 REMARK 500 SER A 52 144.54 -174.42 REMARK 500 LYS A 191 -70.42 -71.64 REMARK 500 SER A 201 -24.58 -141.01 REMARK 500 GLN A 232 -86.91 -97.45 REMARK 500 SER A 234 44.61 -103.53 REMARK 500 ASN A 296 55.90 -140.86 REMARK 500 GLU A 334 30.20 -95.13 REMARK 500 LYS G 24 70.32 45.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 376 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 378 O1B REMARK 620 2 ATP A 378 O1G 89.2 REMARK 620 3 HOH A 380 O 98.7 88.7 REMARK 620 4 HOH A 413 O 87.4 102.6 167.3 REMARK 620 5 HOH A 428 O 93.5 175.8 87.7 80.8 REMARK 620 6 HOH A 478 O 175.1 89.2 85.9 88.4 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD1 79.3 REMARK 620 3 GLU G 73 OE2 115.7 95.7 REMARK 620 4 GLU G 73 OE1 69.9 106.2 49.9 REMARK 620 5 VAL G 121 O 158.4 87.8 82.5 130.9 REMARK 620 6 HOH G 343 O 102.7 173.5 77.8 69.1 92.1 REMARK 620 7 HOH G 349 O 86.3 92.4 157.6 145.8 77.0 93.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 378 DBREF 1YVN A 1 375 UNP P60010 ACT_YEAST 1 375 DBREF 1YVN G 1 125 UNP P06396 GELS_HUMAN 52 176 SEQADV 1YVN ASN A 159 UNP P60010 VAL 159 ENGINEERED MUTATION SEQRES 1 A 375 MET ASP SER GLU VAL ALA ALA LEU VAL ILE ASP ASN GLY SEQRES 2 A 375 SER GLY MET CYS LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY ILE MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU ARG TYR PRO ILE GLU HIS GLY ILE VAL THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO VAL LEU SEQRES 9 A 375 LEU THR GLU ALA PRO MET ASN PRO LYS SER ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA PHE TYR VAL SER ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 SER SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY ASN THR HIS VAL VAL PRO ILE TYR ALA GLY PHE SEQRES 14 A 375 SER LEU PRO HIS ALA ILE LEU ARG ILE ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SER GLU SEQRES 16 A 375 ARG GLY TYR SER PHE SER THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU GLN GLU MET GLN THR ALA ALA GLN SER SER SEQRES 19 A 375 SER ILE GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG ALA PRO GLU ALA SEQRES 21 A 375 LEU PHE HIS PRO SER VAL LEU GLY LEU GLU SER ALA GLY SEQRES 22 A 375 ILE ASP GLN THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 VAL ASP VAL ARG LYS GLU LEU TYR GLY ASN ILE VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET PHE PRO GLY ILE ALA GLU ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SER MET SEQRES 26 A 375 LYS VAL LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU THR THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE SER LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 SER GLY PRO SER ILE VAL HIS HIS LYS CYS PHE SEQRES 1 G 125 MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA GLY LYS SEQRES 2 G 125 GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS PHE ASP SEQRES 3 G 125 LEU VAL PRO VAL PRO THR ASN LEU TYR GLY ASP PHE PHE SEQRES 4 G 125 THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL GLN LEU SEQRES 5 G 125 ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR TRP LEU SEQRES 6 G 125 GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA ALA ALA SEQRES 7 G 125 ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN GLY ARG SEQRES 8 G 125 ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SER ALA SEQRES 9 G 125 THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS TYR LYS SEQRES 10 G 125 LYS GLY GLY VAL ALA SER GLY PHE HET MG A 376 1 HET SO4 A 377 5 HET ATP A 378 31 HET CA G 303 1 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 MG MG 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 CA CA 2+ FORMUL 7 HOH *283(H2 O) HELIX 1 1 ASP A 56 SER A 60 1 5 HELIX 2 2 TRP A 79 TYR A 91 1 13 HELIX 3 3 PRO A 98 GLU A 100 5 3 HELIX 4 4 LYS A 113 GLU A 125 1 13 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ALA A 174 5 3 HELIX 7 7 GLY A 182 GLU A 195 1 14 HELIX 8 8 THR A 203 LEU A 216 1 14 HELIX 9 9 PHE A 223 ALA A 231 1 9 HELIX 10 10 ASN A 252 LEU A 261 5 10 HELIX 11 11 PRO A 264 LEU A 267 5 4 HELIX 12 12 ILE A 274 LYS A 284 1 11 HELIX 13 13 VAL A 287 GLY A 295 1 9 HELIX 14 14 GLY A 302 THR A 304 5 3 HELIX 15 15 ILE A 309 LEU A 320 1 12 HELIX 16 16 SER A 338 SER A 348 1 11 HELIX 17 17 THR A 350 GLN A 354 5 5 HELIX 18 18 LYS A 359 SER A 365 1 7 HELIX 19 19 PRO A 367 LYS A 373 5 7 HELIX 20 20 PRO G 6 LYS G 10 1 5 HELIX 21 21 THR G 32 LEU G 34 5 3 HELIX 22 22 GLN G 71 TYR G 87 1 17 HELIX 23 23 ALA G 104 TYR G 109 1 6 SHEET 1 A 5 PHE A 132 ILE A 136 0 SHEET 2 A 5 VAL A 103 GLU A 107 1 N VAL A 103 O TYR A 133 SHEET 3 A 5 LEU A 8 ASN A 12 1 N LEU A 8 O LEU A 104 SHEET 4 A 5 MET A 16 PHE A 21 -1 N GLY A 20 O VAL A 9 SHEET 5 A 5 ALA A 29 PRO A 32 -1 N PHE A 31 O CYS A 17 SHEET 1 B 2 VAL A 35 PRO A 38 0 SHEET 2 B 2 LEU A 65 ARG A 68 -1 N ARG A 68 O VAL A 35 SHEET 1 C 4 ILE A 297 SER A 300 0 SHEET 2 C 4 GLY A 150 SER A 155 1 N ILE A 151 O VAL A 298 SHEET 3 C 4 THR A 160 ILE A 165 -1 N ILE A 165 O GLY A 150 SHEET 4 C 4 LEU A 176 ILE A 178 -1 N ILE A 178 O THR A 160 SHEET 1 D 2 LYS A 238 GLU A 241 0 SHEET 2 D 2 VAL A 247 ILE A 250 -1 N ILE A 250 O LYS A 238 SHEET 1 E 5 ASP G 26 PRO G 29 0 SHEET 2 E 5 GLY G 16 GLU G 23 -1 N GLU G 23 O ASP G 26 SHEET 3 E 5 ALA G 43 GLN G 51 -1 N THR G 49 O GLY G 16 SHEET 4 E 5 LEU G 57 LEU G 65 -1 N TRP G 64 O TYR G 44 SHEET 5 E 5 ALA G 92 VAL G 98 1 N VAL G 93 O TYR G 59 SHEET 1 F 2 ASP G 37 PHE G 39 0 SHEET 2 F 2 LYS G 115 LYS G 117 1 N LYS G 115 O PHE G 38 LINK MG MG A 376 O1B ATP A 378 1555 1555 2.33 LINK MG MG A 376 O1G ATP A 378 1555 1555 2.32 LINK MG MG A 376 O HOH A 380 1555 1555 2.27 LINK MG MG A 376 O HOH A 413 1555 1555 2.24 LINK MG MG A 376 O HOH A 428 1555 1555 2.18 LINK MG MG A 376 O HOH A 478 1555 1555 2.32 LINK O GLY G 41 CA CA G 303 1555 1555 2.44 LINK OD1 ASP G 42 CA CA G 303 1555 1555 2.48 LINK OE2 GLU G 73 CA CA G 303 1555 1555 2.46 LINK OE1 GLU G 73 CA CA G 303 1555 1555 2.74 LINK O VAL G 121 CA CA G 303 1555 1555 2.37 LINK CA CA G 303 O HOH G 343 1555 1555 2.53 LINK CA CA G 303 O HOH G 349 1555 1555 2.62 SITE 1 AC1 5 ATP A 378 HOH A 380 HOH A 413 HOH A 428 SITE 2 AC1 5 HOH A 478 SITE 1 AC2 6 GLY G 41 ASP G 42 GLU G 73 VAL G 121 SITE 2 AC2 6 HOH G 343 HOH G 349 SITE 1 AC3 4 ARG A 62 THR A 202 THR A 203 ALA A 204 SITE 1 AC4 27 GLY A 13 SER A 14 GLY A 15 MET A 16 SITE 2 AC4 27 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC4 27 ASN A 159 GLY A 182 ARG A 210 LYS A 213 SITE 4 AC4 27 GLU A 214 GLY A 301 GLY A 302 THR A 303 SITE 5 AC4 27 MET A 305 PHE A 306 LYS A 336 MG A 376 SITE 6 AC4 27 HOH A 380 HOH A 390 HOH A 391 HOH A 398 SITE 7 AC4 27 HOH A 436 HOH A 438 HOH A 535 CRYST1 176.098 68.077 54.691 90.00 102.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005679 0.000000 0.001232 0.00000 SCALE2 0.000000 0.014689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018710 0.00000