data_1YWL # _entry.id 1YWL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YWL pdb_00001ywl 10.2210/pdb1ywl/pdb RCSB RCSB032003 ? ? WWPDB D_1000032003 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id EfR36 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YWL _pdbx_database_status.recvd_initial_deposition_date 2005-02-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Northeast Structural Genomics Consortium (NESG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Solution NMR structure of the protein EF2693 from E. faecalis: Northeast Structural Genomics Consortium target EFR36 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Swapna, G.V.T.' 1 ? primary 'Bhattacharya, A.' 2 ? primary 'Aramini, J.M.' 3 ? primary 'Acton, T.B.' 4 ? primary 'Ma, L.' 5 ? primary 'Xiao, R.' 6 ? primary 'Shastry, R.' 7 ? primary 'Shih, L.' 8 ? primary 'Cunningham, K.E.' 9 ? primary 'Montelione, G.T.' 10 ? # _cell.entry_id 1YWL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YWL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Hypothetical UPF0213 protein EF2693' _entity.formula_weight 11502.066 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAFKKLTRKQK EQYLKTFHLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAFKKLTRKQK EQYLKTFHLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier EfR36 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ASN n 1 4 LYS n 1 5 LYS n 1 6 SER n 1 7 HIS n 1 8 TYR n 1 9 PHE n 1 10 TYR n 1 11 VAL n 1 12 LEU n 1 13 LEU n 1 14 CYS n 1 15 GLN n 1 16 ASP n 1 17 GLY n 1 18 SER n 1 19 PHE n 1 20 TYR n 1 21 GLY n 1 22 GLY n 1 23 TYR n 1 24 THR n 1 25 THR n 1 26 GLU n 1 27 PRO n 1 28 GLU n 1 29 ARG n 1 30 ARG n 1 31 LEU n 1 32 THR n 1 33 GLU n 1 34 HIS n 1 35 ASN n 1 36 SER n 1 37 GLY n 1 38 THR n 1 39 GLY n 1 40 ALA n 1 41 LYS n 1 42 TYR n 1 43 THR n 1 44 ARG n 1 45 LEU n 1 46 ALA n 1 47 LYS n 1 48 ARG n 1 49 ARG n 1 50 PRO n 1 51 VAL n 1 52 ILE n 1 53 MET n 1 54 ILE n 1 55 HIS n 1 56 THR n 1 57 GLU n 1 58 LYS n 1 59 PHE n 1 60 GLU n 1 61 THR n 1 62 ARG n 1 63 SER n 1 64 GLU n 1 65 ALA n 1 66 THR n 1 67 LYS n 1 68 ALA n 1 69 GLU n 1 70 ALA n 1 71 ALA n 1 72 PHE n 1 73 LYS n 1 74 LYS n 1 75 LEU n 1 76 THR n 1 77 ARG n 1 78 LYS n 1 79 GLN n 1 80 LYS n 1 81 GLU n 1 82 GLN n 1 83 TYR n 1 84 LEU n 1 85 LYS n 1 86 THR n 1 87 PHE n 1 88 HIS n 1 89 LEU n 1 90 GLU n 1 91 HIS n 1 92 HIS n 1 93 HIS n 1 94 HIS n 1 95 HIS n 1 96 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Enterococcus _entity_src_gen.pdbx_gene_src_gene EF2693 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1351 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pMgK' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y2693_ENTFA _struct_ref.pdbx_db_accession Q830S9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAFKKLTRKQK EQYLKTFH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YWL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q830S9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 88 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YWL LEU A 89 ? UNP Q830S9 ? ? 'cloning artifact' 89 1 1 1YWL GLU A 90 ? UNP Q830S9 ? ? 'cloning artifact' 90 2 1 1YWL HIS A 91 ? UNP Q830S9 ? ? 'cloning artifact' 91 3 1 1YWL HIS A 92 ? UNP Q830S9 ? ? 'cloning artifact' 92 4 1 1YWL HIS A 93 ? UNP Q830S9 ? ? 'cloning artifact' 93 5 1 1YWL HIS A 94 ? UNP Q830S9 ? ? 'cloning artifact' 94 6 1 1YWL HIS A 95 ? UNP Q830S9 ? ? 'cloning artifact' 95 7 1 1YWL HIS A 96 ? UNP Q830S9 ? ? 'cloning artifact' 96 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 mM NaCl, 5 mM CaCl2' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, 5 % D20, 95 % H20' _pdbx_nmr_sample_details.solvent_system '5 % D20, 95 % H20' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 500 ? 2 INOVA Varian 600 ? # _pdbx_nmr_refine.entry_id 1YWL _pdbx_nmr_refine.method ;torsion angle dynamics simulated annealing ; _pdbx_nmr_refine.details ;The structures are based on a total of 912 conformationally-restricting noe-derived distance restraints, 216 dihedral restraints and 54 hydrogen bond restraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1YWL _pdbx_nmr_details.text ;The structure was determined using triple-resonance NMR spectroscopy. Automatic backbone resonance assignments were made using AutoAssign. Side-chain assignments were made manually. Automatic NOE assignments were made using AutoStructure. Dihedral angle restraints were made using Hyper and Talos. The SPINS database software was used as an integrating agent. PSVS was used to validate structure quality. ; # _pdbx_nmr_ensemble.entry_id 1YWL _pdbx_nmr_ensemble.conformers_calculated_total_number 56 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'Structures with lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1YWL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DYANA 1.5 'Guentert, et al' 1 'structure solution' AutoStructure 2.0.0 Huang 2 'data analysis' AutoAssign 1.14 'Moseley, et al' 3 processing NMRPipe 2.1 'Delaglio, et al' 4 collection VNMR 6.1B Varian 5 collection XwinNMR 3.5 Bruker 6 'structure solution' PdbStat 4.01 'Tejero and Montelione' 7 'structure solution' HYPER 3.2 'Tejero and Montelione' 8 'structure solution' TALOS 2.1 'Cornilescu, et al' 9 'data analysis' SPINS 5.0 Baran 10 refinement PSVS 1.0 Bhattacharya 11 # _exptl.entry_id 1YWL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1YWL _struct.title 'Solution NMR structure of the protein EF2693 from E. faecalis: Northeast Structural Genomics Consortium target EFR36' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YWL _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Alpha and beta, Structural Genomics, Northeast Structural Genomics Consortium (NESG), Protein Structure Initiative (PSI), UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 26 ? GLY A 39 ? GLU A 26 GLY A 39 1 ? 14 HELX_P HELX_P2 2 THR A 61 ? LEU A 75 ? THR A 61 LEU A 75 1 ? 15 HELX_P HELX_P3 3 THR A 76 ? GLU A 90 ? THR A 76 GLU A 90 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 20 ? THR A 24 ? TYR A 20 THR A 24 A 2 HIS A 7 ? LEU A 13 ? HIS A 7 LEU A 13 A 3 ILE A 52 ? PHE A 59 ? ILE A 52 PHE A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 22 ? O GLY A 22 N TYR A 10 ? N TYR A 10 A 2 3 N PHE A 9 ? N PHE A 9 O GLU A 57 ? O GLU A 57 # _database_PDB_matrix.entry_id 1YWL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YWL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 HIS 96 96 96 HIS HIS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLN 82 ? ? H A THR 86 ? ? 1.51 2 1 O A GLN 79 ? ? H A TYR 83 ? ? 1.56 3 2 O A PRO 27 ? ? H A LEU 31 ? ? 1.53 4 2 O A GLU 69 ? ? H A LYS 73 ? ? 1.54 5 2 O A GLU 64 ? ? H A ALA 68 ? ? 1.55 6 3 O A GLN 82 ? ? H A THR 86 ? ? 1.49 7 3 O A PRO 27 ? ? H A LEU 31 ? ? 1.52 8 3 O A LEU 84 ? ? H A HIS 88 ? ? 1.53 9 3 O A GLN 79 ? ? H A TYR 83 ? ? 1.54 10 4 O A ARG 30 ? ? H A HIS 34 ? ? 1.53 11 4 O A GLU 33 ? ? H A GLY 37 ? ? 1.54 12 4 O A ALA 71 ? ? H A LEU 75 ? ? 1.55 13 4 O A GLN 79 ? ? H A TYR 83 ? ? 1.55 14 4 O A LEU 84 ? ? H A HIS 88 ? ? 1.55 15 4 O A PRO 27 ? ? H A LEU 31 ? ? 1.57 16 6 O A GLN 79 ? ? H A TYR 83 ? ? 1.53 17 6 O A ARG 62 ? ? H A THR 66 ? ? 1.54 18 6 O A GLU 33 ? ? H A GLY 37 ? ? 1.57 19 7 O A PRO 27 ? ? H A LEU 31 ? ? 1.52 20 7 O A LYS 85 ? ? H A LEU 89 ? ? 1.54 21 7 O A LEU 84 ? ? H A HIS 88 ? ? 1.54 22 8 O A GLN 79 ? ? H A TYR 83 ? ? 1.55 23 9 O A PRO 27 ? ? H A LEU 31 ? ? 1.56 24 9 O A ARG 62 ? ? H A THR 66 ? ? 1.56 25 9 O A THR 32 ? ? H A SER 36 ? ? 1.58 26 9 O A LEU 84 ? ? H A HIS 88 ? ? 1.60 27 10 O A PRO 27 ? ? H A LEU 31 ? ? 1.51 28 10 O A GLN 82 ? ? H A THR 86 ? ? 1.51 29 10 O A LYS 85 ? ? H A LEU 89 ? ? 1.54 30 10 O A GLN 79 ? ? H A TYR 83 ? ? 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 2 ? ? -54.59 -175.21 2 1 ASN A 3 ? ? 59.81 76.21 3 1 LYS A 4 ? ? 163.19 83.57 4 1 LYS A 5 ? ? 45.19 -168.38 5 1 SER A 6 ? ? 61.73 131.18 6 1 GLU A 26 ? ? 67.59 63.73 7 1 LEU A 31 ? ? -72.01 -71.84 8 1 SER A 36 ? ? -90.94 41.82 9 1 LYS A 41 ? ? -120.60 -73.77 10 1 ALA A 46 ? ? 63.65 100.84 11 1 ARG A 49 ? ? 53.93 84.27 12 1 LYS A 78 ? ? -91.85 -75.02 13 1 TYR A 83 ? ? -37.32 -39.99 14 1 HIS A 91 ? ? -155.62 88.05 15 1 HIS A 93 ? ? -176.23 139.42 16 1 HIS A 94 ? ? 62.51 126.61 17 1 HIS A 95 ? ? 57.84 175.05 18 2 LYS A 5 ? ? 56.48 167.79 19 2 SER A 6 ? ? 80.17 -150.75 20 2 GLU A 26 ? ? 73.97 68.05 21 2 GLU A 33 ? ? -51.87 -73.00 22 2 THR A 38 ? ? -157.88 -56.79 23 2 TYR A 42 ? ? 66.39 -68.72 24 2 ARG A 48 ? ? -45.81 169.32 25 2 ARG A 49 ? ? 67.50 95.82 26 2 ILE A 54 ? ? -152.65 41.86 27 2 HIS A 55 ? ? 174.16 101.89 28 2 THR A 76 ? ? -116.69 -165.53 29 2 LYS A 78 ? ? -90.94 -74.31 30 2 THR A 86 ? ? -38.86 -33.64 31 3 GLU A 2 ? ? -58.50 -169.29 32 3 ASN A 3 ? ? 67.28 152.48 33 3 LYS A 4 ? ? 85.51 178.58 34 3 LYS A 5 ? ? -52.10 -176.88 35 3 SER A 6 ? ? 66.51 138.34 36 3 THR A 38 ? ? 60.57 98.98 37 3 ALA A 40 ? ? -132.46 -59.68 38 3 THR A 43 ? ? -169.00 119.41 39 3 ALA A 46 ? ? 56.87 86.17 40 3 ARG A 49 ? ? 70.87 85.46 41 3 ARG A 77 ? ? -49.93 -19.52 42 3 LYS A 78 ? ? -98.47 -74.09 43 4 GLU A 2 ? ? -159.31 77.21 44 4 LYS A 5 ? ? 72.86 152.54 45 4 SER A 6 ? ? 85.75 -168.89 46 4 GLU A 26 ? ? 77.95 74.09 47 4 THR A 38 ? ? 58.89 -87.25 48 4 ALA A 40 ? ? 177.77 153.93 49 4 TYR A 42 ? ? -138.20 -50.21 50 4 ALA A 46 ? ? -63.50 88.75 51 4 ARG A 48 ? ? -56.13 87.29 52 4 ILE A 54 ? ? -148.97 -46.24 53 4 LEU A 75 ? ? -52.06 171.17 54 4 LYS A 78 ? ? -95.18 -75.05 55 4 PHE A 87 ? ? -98.44 -62.06 56 4 HIS A 92 ? ? 66.07 112.29 57 4 HIS A 93 ? ? -46.95 167.84 58 4 HIS A 94 ? ? 51.11 96.28 59 5 ASN A 3 ? ? 59.25 108.03 60 5 LYS A 4 ? ? -172.29 130.01 61 5 SER A 6 ? ? 79.51 -165.87 62 5 GLU A 26 ? ? 76.99 72.38 63 5 ALA A 46 ? ? 42.55 84.06 64 5 ARG A 48 ? ? 54.24 98.42 65 5 LYS A 78 ? ? -84.37 -75.27 66 5 HIS A 92 ? ? 63.89 78.34 67 6 ASN A 3 ? ? 66.09 -169.22 68 6 LYS A 4 ? ? -45.76 95.00 69 6 LYS A 5 ? ? -179.87 97.44 70 6 SER A 6 ? ? 66.73 171.48 71 6 GLU A 26 ? ? 74.94 69.86 72 6 TYR A 42 ? ? 54.82 173.62 73 6 ARG A 48 ? ? 60.48 155.73 74 6 ARG A 49 ? ? 60.12 82.82 75 6 ILE A 54 ? ? -140.44 -47.14 76 6 ARG A 77 ? ? -48.51 -19.12 77 6 LYS A 78 ? ? -95.92 -73.01 78 6 GLN A 79 ? ? -37.99 -38.46 79 6 HIS A 92 ? ? 58.73 170.04 80 6 HIS A 93 ? ? -149.92 -60.72 81 7 ASN A 3 ? ? 71.02 176.34 82 7 LYS A 4 ? ? 67.19 142.05 83 7 LYS A 5 ? ? -39.25 115.48 84 7 SER A 6 ? ? 160.78 126.45 85 7 CYS A 14 ? ? -97.68 -159.86 86 7 GLU A 26 ? ? 52.79 72.06 87 7 THR A 38 ? ? -149.05 -59.94 88 7 ALA A 40 ? ? 66.25 107.50 89 7 LYS A 41 ? ? -45.27 152.64 90 7 THR A 43 ? ? 56.34 86.06 91 7 ARG A 77 ? ? -38.98 -27.57 92 7 LYS A 78 ? ? -96.62 -74.64 93 7 GLN A 79 ? ? -33.58 -37.60 94 7 GLU A 81 ? ? -37.35 -34.88 95 7 GLU A 90 ? ? -45.97 153.13 96 7 HIS A 91 ? ? -174.32 149.15 97 7 HIS A 92 ? ? 69.50 104.35 98 7 HIS A 93 ? ? -178.68 -62.55 99 8 GLU A 2 ? ? 65.51 175.99 100 8 ASN A 3 ? ? -58.86 -153.91 101 8 LYS A 4 ? ? 67.53 66.09 102 8 LYS A 5 ? ? 67.92 149.81 103 8 SER A 6 ? ? 77.64 96.21 104 8 GLU A 26 ? ? 71.33 68.08 105 8 SER A 36 ? ? -91.89 42.30 106 8 ALA A 40 ? ? -137.27 -50.54 107 8 LYS A 41 ? ? -55.78 -174.55 108 8 TYR A 42 ? ? -54.91 -170.18 109 8 THR A 43 ? ? 175.12 -34.51 110 8 ALA A 46 ? ? 46.31 93.46 111 8 ARG A 48 ? ? 61.45 119.46 112 8 THR A 76 ? ? -114.13 -169.06 113 8 LYS A 78 ? ? -100.11 -75.03 114 8 HIS A 94 ? ? -177.24 125.71 115 8 HIS A 95 ? ? -98.00 -61.14 116 9 GLU A 2 ? ? 179.37 105.51 117 9 LYS A 5 ? ? -176.88 145.34 118 9 SER A 6 ? ? 64.94 -157.51 119 9 GLU A 26 ? ? 77.75 71.61 120 9 LYS A 41 ? ? -45.17 167.85 121 9 TYR A 42 ? ? 68.97 -59.12 122 9 ARG A 48 ? ? 70.08 147.20 123 9 LYS A 78 ? ? -84.55 -75.27 124 9 THR A 86 ? ? -39.65 -33.60 125 9 HIS A 92 ? ? -172.43 80.21 126 9 HIS A 93 ? ? -118.71 72.41 127 10 GLU A 2 ? ? -45.67 164.29 128 10 LYS A 4 ? ? -140.99 33.95 129 10 SER A 6 ? ? 54.81 -167.68 130 10 GLU A 26 ? ? 77.75 70.97 131 10 ALA A 40 ? ? -170.25 147.68 132 10 TYR A 42 ? ? 174.35 72.37 133 10 THR A 43 ? ? -161.10 -57.63 134 10 LYS A 47 ? ? -60.83 -70.80 135 10 LYS A 78 ? ? -97.23 -73.00 136 10 GLN A 79 ? ? -37.53 -33.05 137 10 TYR A 83 ? ? -37.20 -37.07 138 10 HIS A 95 ? ? -159.71 87.04 #