HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-05 1YWU TITLE SOLUTION NMR STRUCTURE OF PSEUDOMONAS AERUGINOSA PROTEIN PA4608. TITLE 2 NORTHEAST STRUCTURAL GENOMICS TARGET PAT7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PA4608; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA4608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (LAMDA DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS PA4608, PAT7, BETA BARREL, PILZ DOMAIN, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,A.A.YEE,J.R.CORT,A.SEMESI,C.H.ARROWSMITH,M.A.KENNEDY, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 9 01-MAY-24 1YWU 1 SEQADV REVDAT 8 13-JUL-11 1YWU 1 VERSN REVDAT 7 24-FEB-09 1YWU 1 VERSN REVDAT 6 01-MAY-07 1YWU 1 AUTHOR REVDAT 5 16-JAN-07 1YWU 1 JRNL REVDAT 4 16-JAN-07 1YWU 1 JRNL REVDAT 3 20-SEP-06 1YWU 1 JRNL KEYWDS REVDAT 2 28-JUN-05 1YWU 1 AUTHOR REVDAT 1 29-MAR-05 1YWU 0 JRNL AUTH T.A.RAMELOT,A.YEE,J.R.CORT,A.SEMESI,C.H.ARROWSMITH, JRNL AUTH 2 M.A.KENNEDY JRNL TITL NMR STRUCTURE AND BINDING STUDIES CONFIRM THAT PA4608 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA IS A PILZ DOMAIN AND A C-DI-GMP JRNL TITL 3 BINDING PROTEIN. JRNL REF PROTEINS V. 66 266 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17096419 JRNL DOI 10.1002/PROT.21199 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE NMRPIPE.LINUX, CNS 1.1 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), A. BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE 22 N-TERMINAL RESIDUES REMARK 3 (MGSSHHHHHHSSGRENLYFQGH) AND 2 C-TERMINAL RESIDUES (GS) WERE NOT REMARK 3 INCLUDED IN THE STRUCTURE CALCULATION REMARK 4 REMARK 4 1YWU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032012. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 250 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN, U-15N, 13C; 10 MM REMARK 210 TRIS, 250 MM NACL, 10 MM DTT, 1 REMARK 210 MM BENZAMIDINE, 0.01% NAN3; 1 MM REMARK 210 PROTEIN, U-15N, 13C; 10 MM TRIS, REMARK 210 250 MM NACL, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 0.01%; 1 MM PROTEIN, REMARK 210 U-15N, 10%-13C; 10 MM TRIS, 250 REMARK 210 MM NACL, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 0.01% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 13C_HSQC; HNHA; REMARK 210 H/D EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.1.0, X-PLOR REMARK 210 XPLOR-NIH-2.9.9, SPARKY 3.1 REMARK 210 METHOD USED : AUTOSTRUCTURE, SIMULATED REMARK 210 ANNEALING, WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 35 HH12 ARG A 114 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 -29.52 -145.21 REMARK 500 1 PHE A 11 108.87 -51.38 REMARK 500 1 ALA A 15 103.94 -160.70 REMARK 500 1 TRP A 49 -111.99 -89.73 REMARK 500 1 ASN A 50 -65.71 -95.06 REMARK 500 1 ASP A 108 120.47 72.12 REMARK 500 1 ARG A 114 -162.67 -76.23 REMARK 500 2 ARG A 8 123.80 68.00 REMARK 500 2 ASP A 17 46.71 -80.19 REMARK 500 2 GLN A 24 77.28 -116.76 REMARK 500 2 PRO A 46 47.42 -77.59 REMARK 500 2 TRP A 49 145.55 70.48 REMARK 500 2 PRO A 53 41.19 -85.54 REMARK 500 2 ALA A 78 103.88 -162.48 REMARK 500 2 ASP A 80 -84.89 65.95 REMARK 500 2 HIS A 89 119.33 -160.66 REMARK 500 2 ASP A 108 117.59 -36.05 REMARK 500 3 ARG A 8 88.66 50.52 REMARK 500 3 ARG A 10 164.98 67.31 REMARK 500 3 HIS A 12 -94.16 -78.21 REMARK 500 3 ARG A 13 -155.28 -149.15 REMARK 500 3 ILE A 14 94.86 -65.85 REMARK 500 3 HIS A 34 -37.27 -131.00 REMARK 500 3 ASP A 35 111.20 -170.15 REMARK 500 3 PRO A 56 107.36 -58.98 REMARK 500 3 ASP A 80 -86.44 61.54 REMARK 500 3 ASP A 108 115.19 68.16 REMARK 500 4 GLU A 7 -142.65 -97.34 REMARK 500 4 ARG A 13 100.70 68.26 REMARK 500 4 ALA A 78 107.35 -162.27 REMARK 500 4 ASP A 80 -81.34 62.51 REMARK 500 5 GLN A 4 -57.65 -148.95 REMARK 500 5 HIS A 5 -122.33 53.24 REMARK 500 5 HIS A 34 -70.84 -127.49 REMARK 500 5 GLN A 45 -30.58 109.79 REMARK 500 5 TRP A 49 -79.71 -134.75 REMARK 500 5 ASN A 50 -67.67 -170.96 REMARK 500 5 ALA A 78 118.72 -162.03 REMARK 500 5 ASP A 80 -90.58 56.46 REMARK 500 5 ASP A 108 146.12 72.08 REMARK 500 5 ARG A 114 -92.92 -93.14 REMARK 500 6 GLN A 4 -45.92 72.19 REMARK 500 6 ARG A 9 -112.98 54.20 REMARK 500 6 HIS A 12 100.06 -164.09 REMARK 500 6 ARG A 13 -162.81 -76.25 REMARK 500 6 ALA A 15 98.77 178.71 REMARK 500 6 HIS A 34 -87.32 -133.73 REMARK 500 6 ASP A 80 -77.91 62.17 REMARK 500 6 ASP A 108 131.13 70.16 REMARK 500 6 ARG A 114 -97.13 -77.64 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PAT7 RELATED DB: TARGETDB DBREF 1YWU A 1 125 UNP Q9HVI1 Q9HVI1_PSEAE 1 125 SEQADV 1YWU MET A -21 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLY A -20 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU SER A -19 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU SER A -18 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -17 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -16 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -15 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -14 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -13 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A -12 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU SER A -11 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU SER A -10 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLY A -9 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU ARG A -8 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLU A -7 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU ASN A -6 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU LEU A -5 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU TYR A -4 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU PHE A -3 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLN A -2 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLY A -1 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU HIS A 0 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU GLY A 126 UNP Q9HVI1 CLONING ARTIFACT SEQADV 1YWU SER A 127 UNP Q9HVI1 CLONING ARTIFACT SEQRES 1 A 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 149 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET SER ASP GLN SEQRES 3 A 149 HIS ASP GLU ARG ARG ARG PHE HIS ARG ILE ALA PHE ASP SEQRES 4 A 149 ALA ASP SER GLU ILE LEU GLN GLY GLU ARG ARG TRP GLU SEQRES 5 A 149 VAL LEU LEU HIS ASP VAL SER LEU HIS GLY ILE LEU VAL SEQRES 6 A 149 GLY GLN PRO GLN ASP TRP ASN GLY ASP PRO GLN ARG PRO SEQRES 7 A 149 PHE GLU ALA ARG LEU TYR LEU GLY LEU ASP VAL LEU ILE SEQRES 8 A 149 ARG MET GLU ILE SER LEU ALA TRP ALA ARG ASP GLY LEU SEQRES 9 A 149 LEU GLY PHE GLU CYS GLN HIS ILE ASP LEU ASP SER ILE SEQRES 10 A 149 SER HIS LEU ARG ARG LEU VAL GLU LEU ASN LEU GLY ASP SEQRES 11 A 149 GLU GLU LEU LEU GLU ARG GLU LEU ALA LEU LEU VAL SER SEQRES 12 A 149 ALA HIS ASP ASP GLY SER HELIX 1 1 ASP A 91 LEU A 106 1 16 HELIX 2 2 ASP A 108 ARG A 114 5 7 HELIX 3 3 GLU A 115 LEU A 119 5 5 SHEET 1 A 7 ASP A 19 GLN A 24 0 SHEET 2 A 7 ARG A 27 VAL A 36 -1 O VAL A 31 N SER A 20 SHEET 3 A 7 GLY A 40 GLY A 44 -1 O LEU A 42 N ASP A 35 SHEET 4 A 7 LEU A 82 ILE A 90 -1 O PHE A 85 N ILE A 41 SHEET 5 A 7 LEU A 68 ARG A 79 -1 N ARG A 79 O LEU A 82 SHEET 6 A 7 PRO A 56 TYR A 62 -1 N LEU A 61 O ILE A 69 SHEET 7 A 7 ASP A 19 GLN A 24 -1 N LEU A 23 O GLU A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1