HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-05 1YYC TITLE SOLUTION STRUCTURE OF A PUTATIVE LATE EMBRYOGENESIS ABUNDANT (LEA) TITLE 2 PROTEIN AT2G46140.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LATE EMBRYOGENESIS ABUNDANT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEA PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G46140; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 OTHER_DETAILS: WHEAT GERM CELL-FREE, IN VITRO EXPRESSION KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CESG, PSI, CENTER KEYWDS 2 FOR EUKARYOTIC STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG),J.SONG,R.C.TYLER, AUTHOR 2 M.S.LEE,J.L.MARKLEY REVDAT 5 02-MAR-22 1YYC 1 REMARK SEQADV REVDAT 4 24-FEB-09 1YYC 1 VERSN REVDAT 3 29-APR-08 1YYC 1 SOURCE REVDAT 2 12-FEB-08 1YYC 1 REMARK REVDAT 1 05-APR-05 1YYC 0 JRNL AUTH J.SONG,R.C.TYLER,M.S.LEE,J.L.MARKLEY JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE LATE EMBRYOGENESIS ABUNDANT JRNL TITL 2 (LEA) PROTEIN AT2G46140.1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : BRUKER (XWINNMR), SCHWIETERS, C.D. ET AL (XPLOR REMARK 3 -NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YYC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032066. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 MM BIS-TRIS, 100 MM NACL,10 REMARK 210 MM DTT, PH 7.0, 90% H2O,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNCACB; HN(CO) REMARK 210 CACB; HCCHTOCSY; CCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 97.027.12.56, SPARKY REMARK 210 3.72, CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 63 HZ3 LYS A 118 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 THR A 133 N THR A 133 CA -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 10 -67.55 74.40 REMARK 500 1 PHE A 54 109.19 -58.61 REMARK 500 1 LYS A 55 -53.29 -127.51 REMARK 500 1 ASP A 60 -48.08 171.74 REMARK 500 1 TYR A 74 127.55 -176.33 REMARK 500 1 GLN A 82 109.66 76.30 REMARK 500 1 ALA A 90 -90.13 52.71 REMARK 500 1 THR A 93 135.89 71.87 REMARK 500 1 ASP A 101 87.60 53.23 REMARK 500 1 SER A 108 83.87 53.46 REMARK 500 1 ALA A 120 -16.84 72.19 REMARK 500 1 SER A 126 -73.43 -70.69 REMARK 500 1 MET A 128 100.03 64.15 REMARK 500 1 ASP A 130 107.93 151.85 REMARK 500 1 CYS A 132 -158.74 -99.32 REMARK 500 1 ASP A 134 89.90 70.43 REMARK 500 1 VAL A 152 -78.04 -130.15 REMARK 500 1 SER A 169 25.32 -48.41 REMARK 500 1 ARG A 171 -27.12 72.31 REMARK 500 1 ASP A 172 61.20 -113.74 REMARK 500 2 LEU A 8 -70.10 -94.17 REMARK 500 2 ALA A 10 93.38 -65.76 REMARK 500 2 PRO A 43 106.67 -53.63 REMARK 500 2 ASP A 50 -63.08 -130.22 REMARK 500 2 LYS A 55 -64.57 -130.00 REMARK 500 2 TYR A 74 108.13 178.40 REMARK 500 2 SER A 75 16.66 -50.88 REMARK 500 2 ARG A 92 163.01 81.21 REMARK 500 2 THR A 93 137.84 72.24 REMARK 500 2 ASP A 101 78.66 53.85 REMARK 500 2 SER A 126 -75.81 -82.42 REMARK 500 2 MET A 128 133.56 74.51 REMARK 500 2 ASP A 130 -0.84 67.74 REMARK 500 2 ASP A 134 82.33 65.22 REMARK 500 2 VAL A 152 -53.25 -131.94 REMARK 500 2 SER A 169 -76.48 70.81 REMARK 500 2 LEU A 170 -65.70 63.89 REMARK 500 2 ARG A 171 91.62 63.90 REMARK 500 2 ASP A 172 90.76 74.37 REMARK 500 2 PHE A 173 -35.10 -164.58 REMARK 500 3 HIS A 5 81.53 62.93 REMARK 500 3 HIS A 7 -167.00 69.81 REMARK 500 3 LEU A 8 -60.08 -91.22 REMARK 500 3 GLU A 9 -29.27 -144.12 REMARK 500 3 ASP A 50 -23.04 -157.04 REMARK 500 3 TYR A 74 130.14 170.54 REMARK 500 3 ARG A 92 -41.63 70.86 REMARK 500 3 ASP A 101 81.42 57.29 REMARK 500 3 ALA A 120 -3.90 69.90 REMARK 500 3 SER A 126 -78.84 -75.04 REMARK 500 REMARK 500 THIS ENTRY HAS 396 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6515 RELATED DB: BMRB REMARK 900 RELATED ID: GO.9943 RELATED DB: TARGETDB DBREF 1YYC A 9 174 UNP O82355 O82355_ARATH 1 166 SEQADV 1YYC GLY A 1 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 2 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 3 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 4 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 5 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 6 UNP O82355 CLONING ARTIFACT SEQADV 1YYC HIS A 7 UNP O82355 CLONING ARTIFACT SEQADV 1YYC LEU A 8 UNP O82355 CLONING ARTIFACT SEQADV 1YYC GLU A 9 UNP O82355 MET 1 CLONING ARTIFACT SEQRES 1 A 174 GLY HIS HIS HIS HIS HIS HIS LEU GLU ALA SER ALA ASP SEQRES 2 A 174 GLU LYS VAL VAL GLU GLU LYS ALA SER VAL ILE SER SER SEQRES 3 A 174 LEU LEU ASP LYS ALA LYS GLY PHE PHE ALA GLU LYS LEU SEQRES 4 A 174 ALA ASN ILE PRO THR PRO GLU ALA THR VAL ASP ASP VAL SEQRES 5 A 174 ASP PHE LYS GLY VAL THR ARG ASP GLY VAL ASP TYR HIS SEQRES 6 A 174 ALA LYS VAL SER VAL LYS ASN PRO TYR SER GLN SER ILE SEQRES 7 A 174 PRO ILE CYS GLN ILE SER TYR ILE LEU LYS SER ALA THR SEQRES 8 A 174 ARG THR ILE ALA SER GLY THR ILE PRO ASP PRO GLY SER SEQRES 9 A 174 LEU VAL GLY SER GLY THR THR VAL LEU ASP VAL PRO VAL SEQRES 10 A 174 LYS VAL ALA TYR SER ILE ALA VAL SER LEU MET LYS ASP SEQRES 11 A 174 MET CYS THR ASP TRP ASP ILE ASP TYR GLN LEU ASP ILE SEQRES 12 A 174 GLY LEU THR PHE ASP ILE PRO VAL VAL GLY ASP ILE THR SEQRES 13 A 174 ILE PRO VAL SER THR GLN GLY GLU ILE LYS LEU PRO SER SEQRES 14 A 174 LEU ARG ASP PHE PHE HELIX 1 1 SER A 11 LYS A 38 1 28 HELIX 2 2 ALA A 120 LEU A 127 1 8 SHEET 1 A 3 GLU A 46 VAL A 57 0 SHEET 2 A 3 VAL A 62 ASN A 72 -1 O LYS A 67 N ASP A 51 SHEET 3 A 3 GLY A 109 VAL A 119 -1 O LEU A 113 N VAL A 68 SHEET 1 B 4 ILE A 94 ILE A 99 0 SHEET 2 B 4 ILE A 83 SER A 89 -1 N LEU A 87 O ALA A 95 SHEET 3 B 4 TYR A 139 ASP A 148 -1 O ASP A 142 N ILE A 86 SHEET 4 B 4 ASP A 154 GLN A 162 -1 O VAL A 159 N ILE A 143 SHEET 1 C 2 TRP A 135 ILE A 137 0 SHEET 2 C 2 ILE A 165 LEU A 167 -1 O LEU A 167 N TRP A 135 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1