HEADER    DE NOVO PROTEIN                         25-FEB-05   1YYJ              
TITLE     THE NMR SOLUTION STRUCTURE OF A REDESIGNED APOCYTOCHROME B562:RD-     
TITLE    2 APOCYT B562                                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: REDESIGNED APOCYTOCHROME B562;                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   4 ORGANISM_COMMON: HUMAN;                                              
SOURCE   5 ORGANISM_TAXID: 9606                                                 
KEYWDS    FOUR HELIX PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE       
KEYWDS   2 INITIATIVE, BERKELEY STRUCTURAL GENOMICS CENTER, BSGC, DE NOVO       
KEYWDS   3 PROTEIN                                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    H.FENG,J.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI,BERKELEY STRUCTURAL GENOMICS 
AUTHOR   2 CENTER (BSGC)                                                        
REVDAT   4   27-SEP-23 1YYJ    1       SOURCE                                   
REVDAT   3   02-MAR-22 1YYJ    1       REMARK                                   
REVDAT   2   24-FEB-09 1YYJ    1       VERSN                                    
REVDAT   1   25-AUG-05 1YYJ    0                                                
JRNL        AUTH   H.FENG,J.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI                     
JRNL        TITL   SPECIFIC NON-NATIVE HYDROPHOBIC INTERACTIONS IN A HIDDEN     
JRNL        TITL 2 FOLDING INTERMEDIATE: IMPLICATIONS FOR PROTEIN FOLDING       
JRNL        REF    BIOCHEMISTRY                  V.  42 12461 2003              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   14580191                                                     
JRNL        DOI    10.1021/BI035561S                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR NIH-2.9, X-PLOR NIH-2.9                       
REMARK   3   AUTHORS     : BRUNGER (X-PLOR), BRUNGER (X-PLOR)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1YYJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000032073.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 4.84                               
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.5MM RD APOCYTOCHROME B562, 15N   
REMARK 210                                   AND/OR 13C UNIFORMLY LABELED       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D HSQC; 3D_13C-SEPARATED_NOESY;   
REMARK 210                                   3D_15N-SEPARATED_NOESY; HNHA; 3D   
REMARK 210                                   HNCACB, 3D CBCA(CO)NH; 3D          
REMARK 210                                   HBHA(CO)NH                         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 750 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE                            
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY, SIMULATED       
REMARK 210                                   ANNEALING, MOLECULAR DYNAMICS,     
REMARK 210                                   MATRIX RELAXATION, TORSION ANGLE   
REMARK 210                                   DYNAMICS                           
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: RESIDUAL DIPOLAR COUPLING, 2D NOESY, 3D HNCA, ETC.           
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME;         
REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 470   MODELS 1-10                                                        
REMARK 470     RES CSSEQI  ATOMS                                                
REMARK 470     GLU A   4    CG                                                  
REMARK 470     ASN A  80    C    O                                              
REMARK 470     GLU A  81    N    CA   CB                                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    SER A    55     H    GLU A    57              1.39            
REMARK 500   O    LYS A    27     HG1  THR A    31              1.44            
REMARK 500   O    VAL A    84     H    GLN A    88              1.46            
REMARK 500   O    GLU A     8     H    ASP A    12              1.47            
REMARK 500   O    HIS A    63     H    ILE A    67              1.47            
REMARK 500   O    ILE A    17     H    ALA A    20              1.48            
REMARK 500   O    ARG A    62     H    ASP A    66              1.50            
REMARK 500   O    MET A    58     H    PHE A    61              1.57            
REMARK 500   O    ALA A    36     H    ALA A    40              1.59            
REMARK 500   O    LYS A    27     H    THR A    31              1.59            
REMARK 500   O    ASN A     6     H    LEU A    10              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ILE A  17      -72.19    -70.94                                   
REMARK 500  1 ASP A  21      -13.51     67.13                                   
REMARK 500  1 MET A  33      -73.15    -66.23                                   
REMARK 500  1 LYS A  42       32.20    -74.32                                   
REMARK 500  1 THR A  44       40.05   -156.91                                   
REMARK 500  1 LYS A  47      105.93     82.89                                   
REMARK 500  1 ASP A  50       42.59   -147.00                                   
REMARK 500  1 LYS A  51     -143.07   -171.30                                   
REMARK 500  1 ASP A  54     -126.73     65.89                                   
REMARK 500  1 SER A  55      -37.44   -170.43                                   
REMARK 500  1 PRO A  56       48.56    -54.02                                   
REMARK 500  1 GLU A  57       29.71     45.58                                   
REMARK 500  1 MET A  58       -6.59     63.73                                   
REMARK 500  1 TYR A 105       30.86    -86.20                                   
REMARK 500  2 ILE A  17      -72.99    -71.31                                   
REMARK 500  2 ASP A  21      -11.00     59.13                                   
REMARK 500  2 LYS A  42        4.00    -68.89                                   
REMARK 500  2 THR A  44       69.61   -151.34                                   
REMARK 500  2 PRO A  46      -94.33    -98.68                                   
REMARK 500  2 LYS A  47      117.26   -171.57                                   
REMARK 500  2 GLU A  49       30.59    -99.07                                   
REMARK 500  2 ASP A  50      -53.72   -147.65                                   
REMARK 500  2 LYS A  51     -161.03    -65.23                                   
REMARK 500  2 ASP A  54     -137.72     64.63                                   
REMARK 500  2 SER A  55      -38.92   -161.83                                   
REMARK 500  2 PRO A  56       70.32    -49.21                                   
REMARK 500  2 GLU A  57       32.22     39.47                                   
REMARK 500  2 MET A  58       -8.70     64.73                                   
REMARK 500  3 ILE A  17      -73.51    -70.16                                   
REMARK 500  3 ASP A  21      -15.02     67.76                                   
REMARK 500  3 THR A  44       69.18   -152.31                                   
REMARK 500  3 LYS A  47      101.69     71.83                                   
REMARK 500  3 ASP A  50      -59.50   -144.26                                   
REMARK 500  3 LYS A  51     -162.96    -65.99                                   
REMARK 500  3 ASP A  54     -143.99     76.27                                   
REMARK 500  3 SER A  55      -26.62   -162.36                                   
REMARK 500  3 PRO A  56       40.91    -56.43                                   
REMARK 500  3 GLU A  57       25.56     49.87                                   
REMARK 500  3 MET A  58       -5.08     63.95                                   
REMARK 500  4 ILE A  17      -71.25    -71.23                                   
REMARK 500  4 ASP A  21       -7.62     69.55                                   
REMARK 500  4 LYS A  42        1.05    -57.62                                   
REMARK 500  4 PRO A  46      -90.60    -84.96                                   
REMARK 500  4 LYS A  47      122.23   -176.60                                   
REMARK 500  4 GLU A  49       18.83     50.74                                   
REMARK 500  4 ASP A  50      -55.00   -148.61                                   
REMARK 500  4 LYS A  51     -162.59    -65.69                                   
REMARK 500  4 ASP A  54      164.22     75.40                                   
REMARK 500  4 PRO A  56       62.58    -39.98                                   
REMARK 500  4 GLU A  57       29.08     36.63                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     128 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1RAC   RELATED DB: PDB                                   
REMARK 900 REDESIGNED APOCYTOCHROME B562                                        
REMARK 900 RELATED ID: 1YYX   RELATED DB: PDB                                   
REMARK 900 REDESIGNED APOCYTOCHROME B562                                        
DBREF  1YYJ A    1   106  PDB    1YYJ     1YYJ             1    106             
SEQRES   1 A  106  ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN          
SEQRES   2 A  106  LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL          
SEQRES   3 A  106  LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP          
SEQRES   4 A  106  ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER          
SEQRES   5 A  106  PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE          
SEQRES   6 A  106  ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU          
SEQRES   7 A  106  ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA          
SEQRES   8 A  106  GLU GLN LEU LYS THR THR ILE ARG ALA TYR ASN GLN LYS          
SEQRES   9 A  106  TYR GLY                                                      
HELIX    1   1 ALA A    1  LYS A   19  1                                  19    
HELIX    2   2 ASN A   22  GLN A   41  1                                  20    
HELIX    3   3 MET A   58  ASN A   80  1                                  23    
HELIX    4   4 LYS A   83  TYR A  105  1                                  23    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1