data_1YZ4 # _entry.id 1YZ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YZ4 pdb_00001yz4 10.2210/pdb1yz4/pdb RCSB RCSB032093 ? ? WWPDB D_1000032093 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YZ4 _pdbx_database_status.recvd_initial_deposition_date 2005-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, S.J.' 1 'Ryu, S.E.' 2 'Jeong, D.G.' 3 'Yoon, T.S.' 4 'Kim, J.H.' 5 'Cho, Y.H.' 6 'Jeong, S.K.' 7 'Lee, J.W.' 8 'Son, J.H.' 9 # _citation.id primary _citation.title 'Crystal structure of the catalytic domain of human VHY, a dual-specificity protein phosphatase' _citation.journal_abbrev Proteins _citation.journal_volume 61 _citation.page_first 694 _citation.page_last 697 _citation.year 2005 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16170801 _citation.pdbx_database_id_DOI 10.1002/prot.20642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoon, T.S.' 1 ? primary 'Jeong, D.G.' 2 ? primary 'Kim, J.H.' 3 ? primary 'Cho, Y.H.' 4 ? primary 'Son, J.H.' 5 ? primary 'Lee, J.W.' 6 ? primary 'Ryu, S.E.' 7 ? primary 'Kim, S.J.' 8 ? # _cell.entry_id 1YZ4 _cell.length_a 43.233 _cell.length_b 76.395 _cell.length_c 101.429 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZ4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dual specificity phosphatase-like 15 isoform a' 17923.617 2 3.1.3.48 S88C 'catalytic domain' ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DUSP15 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGNGMTKVLPGLYLGNFIDAKDLDQLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKKHFKECINFIHCC RLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEFGWASSQKLRRQLEERFGES ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGNGMTKVLPGLYLGNFIDAKDLDQLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKKHFKECINFIHCC RLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEFGWASSQKLRRQLEERFGES ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 ASN n 1 7 GLY n 1 8 MET n 1 9 THR n 1 10 LYS n 1 11 VAL n 1 12 LEU n 1 13 PRO n 1 14 GLY n 1 15 LEU n 1 16 TYR n 1 17 LEU n 1 18 GLY n 1 19 ASN n 1 20 PHE n 1 21 ILE n 1 22 ASP n 1 23 ALA n 1 24 LYS n 1 25 ASP n 1 26 LEU n 1 27 ASP n 1 28 GLN n 1 29 LEU n 1 30 GLY n 1 31 ARG n 1 32 ASN n 1 33 LYS n 1 34 ILE n 1 35 THR n 1 36 HIS n 1 37 ILE n 1 38 ILE n 1 39 SER n 1 40 ILE n 1 41 HIS n 1 42 GLU n 1 43 SER n 1 44 PRO n 1 45 GLN n 1 46 PRO n 1 47 LEU n 1 48 LEU n 1 49 GLN n 1 50 ASP n 1 51 ILE n 1 52 THR n 1 53 TYR n 1 54 LEU n 1 55 ARG n 1 56 ILE n 1 57 PRO n 1 58 VAL n 1 59 ALA n 1 60 ASP n 1 61 THR n 1 62 PRO n 1 63 GLU n 1 64 VAL n 1 65 PRO n 1 66 ILE n 1 67 LYS n 1 68 LYS n 1 69 HIS n 1 70 PHE n 1 71 LYS n 1 72 GLU n 1 73 CYS n 1 74 ILE n 1 75 ASN n 1 76 PHE n 1 77 ILE n 1 78 HIS n 1 79 CYS n 1 80 CYS n 1 81 ARG n 1 82 LEU n 1 83 ASN n 1 84 GLY n 1 85 GLY n 1 86 ASN n 1 87 CYS n 1 88 LEU n 1 89 VAL n 1 90 HIS n 1 91 SER n 1 92 PHE n 1 93 ALA n 1 94 GLY n 1 95 ILE n 1 96 SER n 1 97 ARG n 1 98 SER n 1 99 THR n 1 100 THR n 1 101 ILE n 1 102 VAL n 1 103 THR n 1 104 ALA n 1 105 TYR n 1 106 VAL n 1 107 MET n 1 108 THR n 1 109 VAL n 1 110 THR n 1 111 GLY n 1 112 LEU n 1 113 GLY n 1 114 TRP n 1 115 ARG n 1 116 ASP n 1 117 VAL n 1 118 LEU n 1 119 GLU n 1 120 ALA n 1 121 ILE n 1 122 LYS n 1 123 ALA n 1 124 THR n 1 125 ARG n 1 126 PRO n 1 127 ILE n 1 128 ALA n 1 129 ASN n 1 130 PRO n 1 131 ASN n 1 132 PRO n 1 133 GLY n 1 134 PHE n 1 135 ARG n 1 136 GLN n 1 137 GLN n 1 138 LEU n 1 139 GLU n 1 140 GLU n 1 141 PHE n 1 142 GLY n 1 143 TRP n 1 144 ALA n 1 145 SER n 1 146 SER n 1 147 GLN n 1 148 LYS n 1 149 LEU n 1 150 ARG n 1 151 ARG n 1 152 GLN n 1 153 LEU n 1 154 GLU n 1 155 GLU n 1 156 ARG n 1 157 PHE n 1 158 GLY n 1 159 GLU n 1 160 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5QP65_HUMAN _struct_ref.pdbx_db_accession Q5QP65 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGNGMTKVLPGLYLGNFIDAKDLDQLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLN GGNCLVHCFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEFGWASSQKLRRQLEERFGES ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YZ4 A 4 ? 160 ? Q5QP65 1 ? 157 ? 1 157 2 1 1YZ4 B 4 ? 160 ? Q5QP65 1 ? 157 ? 1 157 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YZ4 GLY A 1 ? UNP Q5QP65 ? ? 'cloning artifact' -2 1 1 1YZ4 SER A 2 ? UNP Q5QP65 ? ? 'cloning artifact' -1 2 1 1YZ4 HIS A 3 ? UNP Q5QP65 ? ? 'cloning artifact' 0 3 1 1YZ4 SER A 91 ? UNP Q5QP65 CYS 88 'engineered mutation' 88 4 2 1YZ4 GLY B 1 ? UNP Q5QP65 ? ? 'cloning artifact' -2 5 2 1YZ4 SER B 2 ? UNP Q5QP65 ? ? 'cloning artifact' -1 6 2 1YZ4 HIS B 3 ? UNP Q5QP65 ? ? 'cloning artifact' 0 7 2 1YZ4 SER B 91 ? UNP Q5QP65 CYS 88 'engineered mutation' 88 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YZ4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, PEG 8000, beta-octyl glucopyranoside, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-04-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1YZ4 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 40 _reflns.number_all 13717 _reflns.number_obs 13673 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YZ4 _refine.ls_d_res_high 2.4 _refine.ls_d_res_low 40 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13717 _refine.ls_number_reflns_obs 13673 _refine.ls_number_reflns_R_free 701 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.224 _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.269 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2483 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 2617 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.29 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1YZ4 _struct.title 'Crystal structure of DUSP15' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YZ4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text hydrolase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'The biological assembly is a monomer' ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 21 ? LYS A 24 ? ILE A 18 LYS A 21 5 ? 4 HELX_P HELX_P2 2 ASP A 25 ? ASN A 32 ? ASP A 22 ASN A 29 1 ? 8 HELX_P HELX_P3 3 PRO A 65 ? LYS A 68 ? PRO A 62 LYS A 65 5 ? 4 HELX_P HELX_P4 4 HIS A 69 ? ASN A 83 ? HIS A 66 ASN A 80 1 ? 15 HELX_P HELX_P5 5 SER A 96 ? GLY A 111 ? SER A 93 GLY A 108 1 ? 16 HELX_P HELX_P6 6 GLY A 113 ? THR A 124 ? GLY A 110 THR A 121 1 ? 12 HELX_P HELX_P7 7 ASN A 131 ? ALA A 144 ? ASN A 128 ALA A 141 1 ? 14 HELX_P HELX_P8 8 ALA A 144 ? GLY A 158 ? ALA A 141 GLY A 155 1 ? 15 HELX_P HELX_P9 9 ASN B 19 ? ASP B 25 ? ASN B 16 ASP B 22 1 ? 7 HELX_P HELX_P10 10 ASP B 25 ? ASN B 32 ? ASP B 22 ASN B 29 1 ? 8 HELX_P HELX_P11 11 PRO B 65 ? LYS B 68 ? PRO B 62 LYS B 65 5 ? 4 HELX_P HELX_P12 12 HIS B 69 ? ASN B 83 ? HIS B 66 ASN B 80 1 ? 15 HELX_P HELX_P13 13 SER B 96 ? GLY B 111 ? SER B 93 GLY B 108 1 ? 16 HELX_P HELX_P14 14 GLY B 113 ? ARG B 125 ? GLY B 110 ARG B 122 1 ? 13 HELX_P HELX_P15 15 ASN B 131 ? GLY B 142 ? ASN B 128 GLY B 139 1 ? 12 HELX_P HELX_P16 16 ALA B 144 ? PHE B 157 ? ALA B 141 PHE B 154 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 9 ? LEU A 12 ? THR A 6 LEU A 9 A 2 LEU A 15 ? GLY A 18 ? LEU A 12 GLY A 15 A 3 CYS A 87 ? SER A 91 ? CYS A 84 SER A 88 A 4 HIS A 36 ? ILE A 40 ? HIS A 33 ILE A 37 A 5 THR A 52 ? ILE A 56 ? THR A 49 ILE A 53 B 1 THR B 9 ? LEU B 12 ? THR B 6 LEU B 9 B 2 LEU B 15 ? GLY B 18 ? LEU B 12 GLY B 15 B 3 CYS B 87 ? HIS B 90 ? CYS B 84 HIS B 87 B 4 HIS B 36 ? SER B 39 ? HIS B 33 SER B 36 B 5 THR B 52 ? ARG B 55 ? THR B 49 ARG B 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 12 ? N LEU A 9 O LEU A 15 ? O LEU A 12 A 2 3 N TYR A 16 ? N TYR A 13 O VAL A 89 ? O VAL A 86 A 3 4 O LEU A 88 ? O LEU A 85 N HIS A 36 ? N HIS A 33 A 4 5 N SER A 39 ? N SER A 36 O ILE A 56 ? O ILE A 53 B 1 2 N VAL B 11 ? N VAL B 8 O LEU B 15 ? O LEU B 12 B 2 3 N TYR B 16 ? N TYR B 13 O VAL B 89 ? O VAL B 86 B 3 4 O LEU B 88 ? O LEU B 85 N HIS B 36 ? N HIS B 33 B 4 5 N ILE B 37 ? N ILE B 34 O THR B 52 ? O THR B 49 # _database_PDB_matrix.entry_id 1YZ4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YZ4 _atom_sites.fract_transf_matrix[1][1] 0.023130 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013090 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009859 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 GLY 5 2 2 GLY GLY A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 GLY 7 4 4 GLY GLY A . n A 1 8 MET 8 5 5 MET MET A . n A 1 9 THR 9 6 6 THR THR A . n A 1 10 LYS 10 7 7 LYS LYS A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 PRO 13 10 10 PRO PRO A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 TYR 16 13 13 TYR TYR A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ASN 19 16 16 ASN ASN A . n A 1 20 PHE 20 17 17 PHE PHE A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ASP 22 19 19 ASP ASP A . n A 1 23 ALA 23 20 20 ALA ALA A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 GLN 28 25 25 GLN GLN A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 LYS 33 30 30 LYS LYS A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 HIS 36 33 33 HIS HIS A . n A 1 37 ILE 37 34 34 ILE ILE A . n A 1 38 ILE 38 35 35 ILE ILE A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 ILE 40 37 37 ILE ILE A . n A 1 41 HIS 41 38 38 HIS HIS A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 PRO 44 41 41 PRO PRO A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 GLN 49 46 46 GLN GLN A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 ILE 51 48 48 ILE ILE A . n A 1 52 THR 52 49 49 THR THR A . n A 1 53 TYR 53 50 50 TYR TYR A . n A 1 54 LEU 54 51 51 LEU LEU A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 ILE 56 53 53 ILE ILE A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 VAL 58 55 55 VAL VAL A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 THR 61 58 58 THR THR A . n A 1 62 PRO 62 59 59 PRO PRO A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 PRO 65 62 62 PRO PRO A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 LYS 67 64 64 LYS LYS A . n A 1 68 LYS 68 65 65 LYS LYS A . n A 1 69 HIS 69 66 66 HIS HIS A . n A 1 70 PHE 70 67 67 PHE PHE A . n A 1 71 LYS 71 68 68 LYS LYS A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 CYS 73 70 70 CYS CYS A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 ASN 75 72 72 ASN ASN A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 HIS 78 75 75 HIS HIS A . n A 1 79 CYS 79 76 76 CYS CYS A . n A 1 80 CYS 80 77 77 CYS CYS A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 LEU 82 79 79 LEU LEU A . n A 1 83 ASN 83 80 80 ASN ASN A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 ASN 86 83 83 ASN ASN A . n A 1 87 CYS 87 84 84 CYS CYS A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 HIS 90 87 87 HIS HIS A . n A 1 91 SER 91 88 88 SER SER A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 ILE 95 92 92 ILE ILE A . n A 1 96 SER 96 93 93 SER SER A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 THR 99 96 96 THR THR A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 THR 103 100 100 THR THR A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 TYR 105 102 102 TYR TYR A . n A 1 106 VAL 106 103 103 VAL VAL A . n A 1 107 MET 107 104 104 MET MET A . n A 1 108 THR 108 105 105 THR THR A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 THR 110 107 107 THR THR A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 GLY 113 110 110 GLY GLY A . n A 1 114 TRP 114 111 111 TRP TRP A . n A 1 115 ARG 115 112 112 ARG ARG A . n A 1 116 ASP 116 113 113 ASP ASP A . n A 1 117 VAL 117 114 114 VAL VAL A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 ILE 121 118 118 ILE ILE A . n A 1 122 LYS 122 119 119 LYS LYS A . n A 1 123 ALA 123 120 120 ALA ALA A . n A 1 124 THR 124 121 121 THR THR A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 PRO 126 123 123 PRO PRO A . n A 1 127 ILE 127 124 124 ILE ILE A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 ASN 129 126 126 ASN ASN A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 ASN 131 128 128 ASN ASN A . n A 1 132 PRO 132 129 129 PRO PRO A . n A 1 133 GLY 133 130 130 GLY GLY A . n A 1 134 PHE 134 131 131 PHE PHE A . n A 1 135 ARG 135 132 132 ARG ARG A . n A 1 136 GLN 136 133 133 GLN GLN A . n A 1 137 GLN 137 134 134 GLN GLN A . n A 1 138 LEU 138 135 135 LEU LEU A . n A 1 139 GLU 139 136 136 GLU GLU A . n A 1 140 GLU 140 137 137 GLU GLU A . n A 1 141 PHE 141 138 138 PHE PHE A . n A 1 142 GLY 142 139 139 GLY GLY A . n A 1 143 TRP 143 140 140 TRP TRP A . n A 1 144 ALA 144 141 141 ALA ALA A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 SER 146 143 143 SER SER A . n A 1 147 GLN 147 144 144 GLN GLN A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 LEU 149 146 146 LEU LEU A . n A 1 150 ARG 150 147 147 ARG ARG A . n A 1 151 ARG 151 148 148 ARG ARG A . n A 1 152 GLN 152 149 149 GLN GLN A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 GLU 154 151 151 GLU GLU A . n A 1 155 GLU 155 152 152 GLU GLU A . n A 1 156 ARG 156 153 153 ARG ARG A . n A 1 157 PHE 157 154 154 PHE PHE A . n A 1 158 GLY 158 155 155 GLY GLY A . n A 1 159 GLU 159 156 156 GLU GLU A . n A 1 160 SER 160 157 ? ? ? A . n B 1 1 GLY 1 -2 ? ? ? B . n B 1 2 SER 2 -1 ? ? ? B . n B 1 3 HIS 3 0 ? ? ? B . n B 1 4 MET 4 1 ? ? ? B . n B 1 5 GLY 5 2 2 GLY GLY B . n B 1 6 ASN 6 3 3 ASN ASN B . n B 1 7 GLY 7 4 4 GLY GLY B . n B 1 8 MET 8 5 5 MET MET B . n B 1 9 THR 9 6 6 THR THR B . n B 1 10 LYS 10 7 7 LYS LYS B . n B 1 11 VAL 11 8 8 VAL VAL B . n B 1 12 LEU 12 9 9 LEU LEU B . n B 1 13 PRO 13 10 10 PRO PRO B . n B 1 14 GLY 14 11 11 GLY GLY B . n B 1 15 LEU 15 12 12 LEU LEU B . n B 1 16 TYR 16 13 13 TYR TYR B . n B 1 17 LEU 17 14 14 LEU LEU B . n B 1 18 GLY 18 15 15 GLY GLY B . n B 1 19 ASN 19 16 16 ASN ASN B . n B 1 20 PHE 20 17 17 PHE PHE B . n B 1 21 ILE 21 18 18 ILE ILE B . n B 1 22 ASP 22 19 19 ASP ASP B . n B 1 23 ALA 23 20 20 ALA ALA B . n B 1 24 LYS 24 21 21 LYS LYS B . n B 1 25 ASP 25 22 22 ASP ASP B . n B 1 26 LEU 26 23 23 LEU LEU B . n B 1 27 ASP 27 24 24 ASP ASP B . n B 1 28 GLN 28 25 25 GLN GLN B . n B 1 29 LEU 29 26 26 LEU LEU B . n B 1 30 GLY 30 27 27 GLY GLY B . n B 1 31 ARG 31 28 28 ARG ARG B . n B 1 32 ASN 32 29 29 ASN ASN B . n B 1 33 LYS 33 30 30 LYS LYS B . n B 1 34 ILE 34 31 31 ILE ILE B . n B 1 35 THR 35 32 32 THR THR B . n B 1 36 HIS 36 33 33 HIS HIS B . n B 1 37 ILE 37 34 34 ILE ILE B . n B 1 38 ILE 38 35 35 ILE ILE B . n B 1 39 SER 39 36 36 SER SER B . n B 1 40 ILE 40 37 37 ILE ILE B . n B 1 41 HIS 41 38 38 HIS HIS B . n B 1 42 GLU 42 39 39 GLU GLU B . n B 1 43 SER 43 40 40 SER SER B . n B 1 44 PRO 44 41 41 PRO PRO B . n B 1 45 GLN 45 42 42 GLN GLN B . n B 1 46 PRO 46 43 43 PRO PRO B . n B 1 47 LEU 47 44 44 LEU LEU B . n B 1 48 LEU 48 45 45 LEU LEU B . n B 1 49 GLN 49 46 46 GLN GLN B . n B 1 50 ASP 50 47 47 ASP ASP B . n B 1 51 ILE 51 48 48 ILE ILE B . n B 1 52 THR 52 49 49 THR THR B . n B 1 53 TYR 53 50 50 TYR TYR B . n B 1 54 LEU 54 51 51 LEU LEU B . n B 1 55 ARG 55 52 52 ARG ARG B . n B 1 56 ILE 56 53 53 ILE ILE B . n B 1 57 PRO 57 54 54 PRO PRO B . n B 1 58 VAL 58 55 55 VAL VAL B . n B 1 59 ALA 59 56 56 ALA ALA B . n B 1 60 ASP 60 57 57 ASP ASP B . n B 1 61 THR 61 58 58 THR THR B . n B 1 62 PRO 62 59 59 PRO PRO B . n B 1 63 GLU 63 60 60 GLU GLU B . n B 1 64 VAL 64 61 61 VAL VAL B . n B 1 65 PRO 65 62 62 PRO PRO B . n B 1 66 ILE 66 63 63 ILE ILE B . n B 1 67 LYS 67 64 64 LYS LYS B . n B 1 68 LYS 68 65 65 LYS LYS B . n B 1 69 HIS 69 66 66 HIS HIS B . n B 1 70 PHE 70 67 67 PHE PHE B . n B 1 71 LYS 71 68 68 LYS LYS B . n B 1 72 GLU 72 69 69 GLU GLU B . n B 1 73 CYS 73 70 70 CYS CYS B . n B 1 74 ILE 74 71 71 ILE ILE B . n B 1 75 ASN 75 72 72 ASN ASN B . n B 1 76 PHE 76 73 73 PHE PHE B . n B 1 77 ILE 77 74 74 ILE ILE B . n B 1 78 HIS 78 75 75 HIS HIS B . n B 1 79 CYS 79 76 76 CYS CYS B . n B 1 80 CYS 80 77 77 CYS CYS B . n B 1 81 ARG 81 78 78 ARG ARG B . n B 1 82 LEU 82 79 79 LEU LEU B . n B 1 83 ASN 83 80 80 ASN ASN B . n B 1 84 GLY 84 81 81 GLY GLY B . n B 1 85 GLY 85 82 82 GLY GLY B . n B 1 86 ASN 86 83 83 ASN ASN B . n B 1 87 CYS 87 84 84 CYS CYS B . n B 1 88 LEU 88 85 85 LEU LEU B . n B 1 89 VAL 89 86 86 VAL VAL B . n B 1 90 HIS 90 87 87 HIS HIS B . n B 1 91 SER 91 88 88 SER SER B . n B 1 92 PHE 92 89 89 PHE PHE B . n B 1 93 ALA 93 90 90 ALA ALA B . n B 1 94 GLY 94 91 91 GLY GLY B . n B 1 95 ILE 95 92 92 ILE ILE B . n B 1 96 SER 96 93 93 SER SER B . n B 1 97 ARG 97 94 94 ARG ARG B . n B 1 98 SER 98 95 95 SER SER B . n B 1 99 THR 99 96 96 THR THR B . n B 1 100 THR 100 97 97 THR THR B . n B 1 101 ILE 101 98 98 ILE ILE B . n B 1 102 VAL 102 99 99 VAL VAL B . n B 1 103 THR 103 100 100 THR THR B . n B 1 104 ALA 104 101 101 ALA ALA B . n B 1 105 TYR 105 102 102 TYR TYR B . n B 1 106 VAL 106 103 103 VAL VAL B . n B 1 107 MET 107 104 104 MET MET B . n B 1 108 THR 108 105 105 THR THR B . n B 1 109 VAL 109 106 106 VAL VAL B . n B 1 110 THR 110 107 107 THR THR B . n B 1 111 GLY 111 108 108 GLY GLY B . n B 1 112 LEU 112 109 109 LEU LEU B . n B 1 113 GLY 113 110 110 GLY GLY B . n B 1 114 TRP 114 111 111 TRP TRP B . n B 1 115 ARG 115 112 112 ARG ARG B . n B 1 116 ASP 116 113 113 ASP ASP B . n B 1 117 VAL 117 114 114 VAL VAL B . n B 1 118 LEU 118 115 115 LEU LEU B . n B 1 119 GLU 119 116 116 GLU GLU B . n B 1 120 ALA 120 117 117 ALA ALA B . n B 1 121 ILE 121 118 118 ILE ILE B . n B 1 122 LYS 122 119 119 LYS LYS B . n B 1 123 ALA 123 120 120 ALA ALA B . n B 1 124 THR 124 121 121 THR THR B . n B 1 125 ARG 125 122 122 ARG ARG B . n B 1 126 PRO 126 123 123 PRO PRO B . n B 1 127 ILE 127 124 124 ILE ILE B . n B 1 128 ALA 128 125 125 ALA ALA B . n B 1 129 ASN 129 126 126 ASN ASN B . n B 1 130 PRO 130 127 127 PRO PRO B . n B 1 131 ASN 131 128 128 ASN ASN B . n B 1 132 PRO 132 129 129 PRO PRO B . n B 1 133 GLY 133 130 130 GLY GLY B . n B 1 134 PHE 134 131 131 PHE PHE B . n B 1 135 ARG 135 132 132 ARG ARG B . n B 1 136 GLN 136 133 133 GLN GLN B . n B 1 137 GLN 137 134 134 GLN GLN B . n B 1 138 LEU 138 135 135 LEU LEU B . n B 1 139 GLU 139 136 136 GLU GLU B . n B 1 140 GLU 140 137 137 GLU GLU B . n B 1 141 PHE 141 138 138 PHE PHE B . n B 1 142 GLY 142 139 139 GLY GLY B . n B 1 143 TRP 143 140 140 TRP TRP B . n B 1 144 ALA 144 141 141 ALA ALA B . n B 1 145 SER 145 142 142 SER SER B . n B 1 146 SER 146 143 143 SER SER B . n B 1 147 GLN 147 144 144 GLN GLN B . n B 1 148 LYS 148 145 145 LYS LYS B . n B 1 149 LEU 149 146 146 LEU LEU B . n B 1 150 ARG 150 147 147 ARG ARG B . n B 1 151 ARG 151 148 148 ARG ARG B . n B 1 152 GLN 152 149 149 GLN GLN B . n B 1 153 LEU 153 150 150 LEU LEU B . n B 1 154 GLU 154 151 151 GLU GLU B . n B 1 155 GLU 155 152 152 GLU GLU B . n B 1 156 ARG 156 153 153 ARG ARG B . n B 1 157 PHE 157 154 154 PHE PHE B . n B 1 158 GLY 158 155 155 GLY GLY B . n B 1 159 GLU 159 156 156 GLU GLU B . n B 1 160 SER 160 157 157 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG 1 210 210 BOG BOG A . D 3 SO4 1 211 101 SO4 SUL A . E 3 SO4 1 158 102 SO4 SUL B . F 3 SO4 1 159 103 SO4 SUL B . G 3 SO4 1 160 104 SO4 SUL B . H 4 HOH 1 212 3 HOH HOH A . H 4 HOH 2 213 6 HOH HOH A . H 4 HOH 3 214 7 HOH HOH A . H 4 HOH 4 215 8 HOH HOH A . H 4 HOH 5 216 9 HOH HOH A . H 4 HOH 6 217 11 HOH HOH A . H 4 HOH 7 218 15 HOH HOH A . H 4 HOH 8 219 16 HOH HOH A . H 4 HOH 9 220 17 HOH HOH A . H 4 HOH 10 221 20 HOH HOH A . H 4 HOH 11 222 21 HOH HOH A . H 4 HOH 12 223 22 HOH HOH A . H 4 HOH 13 224 26 HOH HOH A . H 4 HOH 14 225 27 HOH HOH A . H 4 HOH 15 226 30 HOH HOH A . H 4 HOH 16 227 32 HOH HOH A . H 4 HOH 17 228 35 HOH HOH A . H 4 HOH 18 229 36 HOH HOH A . H 4 HOH 19 230 38 HOH HOH A . H 4 HOH 20 231 41 HOH HOH A . H 4 HOH 21 232 42 HOH HOH A . H 4 HOH 22 233 44 HOH HOH A . H 4 HOH 23 234 45 HOH HOH A . H 4 HOH 24 235 46 HOH HOH A . H 4 HOH 25 236 47 HOH HOH A . H 4 HOH 26 237 48 HOH HOH A . H 4 HOH 27 238 49 HOH HOH A . H 4 HOH 28 239 54 HOH HOH A . H 4 HOH 29 240 55 HOH HOH A . H 4 HOH 30 241 56 HOH HOH A . H 4 HOH 31 242 59 HOH HOH A . H 4 HOH 32 243 65 HOH HOH A . H 4 HOH 33 244 66 HOH HOH A . H 4 HOH 34 245 68 HOH HOH A . H 4 HOH 35 246 69 HOH HOH A . H 4 HOH 36 247 70 HOH HOH A . H 4 HOH 37 248 71 HOH HOH A . H 4 HOH 38 249 73 HOH HOH A . H 4 HOH 39 250 75 HOH HOH A . H 4 HOH 40 251 76 HOH HOH A . H 4 HOH 41 252 77 HOH HOH A . H 4 HOH 42 253 78 HOH HOH A . H 4 HOH 43 254 79 HOH HOH A . H 4 HOH 44 255 80 HOH HOH A . H 4 HOH 45 256 81 HOH HOH A . H 4 HOH 46 257 83 HOH HOH A . H 4 HOH 47 258 85 HOH HOH A . H 4 HOH 48 259 89 HOH HOH A . H 4 HOH 49 260 90 HOH HOH A . H 4 HOH 50 261 91 HOH HOH A . H 4 HOH 51 262 92 HOH HOH A . H 4 HOH 52 263 93 HOH HOH A . H 4 HOH 53 264 94 HOH HOH A . H 4 HOH 54 265 95 HOH HOH A . I 4 HOH 1 161 1 HOH HOH B . I 4 HOH 2 162 2 HOH HOH B . I 4 HOH 3 163 4 HOH HOH B . I 4 HOH 4 164 5 HOH HOH B . I 4 HOH 5 165 10 HOH HOH B . I 4 HOH 6 166 12 HOH HOH B . I 4 HOH 7 167 13 HOH HOH B . I 4 HOH 8 168 14 HOH HOH B . I 4 HOH 9 169 18 HOH HOH B . I 4 HOH 10 170 19 HOH HOH B . I 4 HOH 11 171 23 HOH HOH B . I 4 HOH 12 172 24 HOH HOH B . I 4 HOH 13 173 25 HOH HOH B . I 4 HOH 14 174 28 HOH HOH B . I 4 HOH 15 175 29 HOH HOH B . I 4 HOH 16 176 31 HOH HOH B . I 4 HOH 17 177 33 HOH HOH B . I 4 HOH 18 178 34 HOH HOH B . I 4 HOH 19 179 37 HOH HOH B . I 4 HOH 20 180 39 HOH HOH B . I 4 HOH 21 181 40 HOH HOH B . I 4 HOH 22 182 43 HOH HOH B . I 4 HOH 23 183 50 HOH HOH B . I 4 HOH 24 184 52 HOH HOH B . I 4 HOH 25 185 53 HOH HOH B . I 4 HOH 26 186 57 HOH HOH B . I 4 HOH 27 187 58 HOH HOH B . I 4 HOH 28 188 60 HOH HOH B . I 4 HOH 29 189 61 HOH HOH B . I 4 HOH 30 190 62 HOH HOH B . I 4 HOH 31 191 63 HOH HOH B . I 4 HOH 32 192 64 HOH HOH B . I 4 HOH 33 193 67 HOH HOH B . I 4 HOH 34 194 72 HOH HOH B . I 4 HOH 35 195 74 HOH HOH B . I 4 HOH 36 196 82 HOH HOH B . I 4 HOH 37 197 84 HOH HOH B . I 4 HOH 38 198 86 HOH HOH B . I 4 HOH 39 199 87 HOH HOH B . I 4 HOH 40 200 88 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,H 2 1 B,E,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-11-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen 8 5 'Structure model' chem_comp 9 5 'Structure model' database_2 10 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.mon_nstd_flag' 2 4 'Structure model' '_chem_comp.name' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_chem_comp.pdbx_synonyms' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 EPMR phasing . ? 3 CNS refinement 0.9 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 1 ? ? -64.42 78.89 2 1 ARG A 122 ? ? -178.35 78.37 3 1 ASN A 126 ? ? -167.75 92.41 4 1 ALA A 141 ? ? -83.26 -76.34 5 1 ASN B 3 ? ? -68.72 52.47 6 1 PRO B 43 ? ? -69.05 98.27 7 1 PRO B 54 ? ? -69.33 85.37 8 1 ASP B 57 ? ? -113.83 78.61 9 1 PRO B 59 ? ? -59.10 -1.19 10 1 SER B 93 ? ? -104.45 -69.03 11 1 ASN B 126 ? ? -173.26 94.45 12 1 ALA B 141 ? ? -134.24 -46.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 157 ? A SER 160 2 1 Y 1 B GLY -2 ? B GLY 1 3 1 Y 1 B SER -1 ? B SER 2 4 1 Y 1 B HIS 0 ? B HIS 3 5 1 Y 1 B MET 1 ? B MET 4 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 'SULFATE ION' SO4 4 water HOH #