HEADER SIGNALING PROTEIN 28-FEB-05 1YZ5 TITLE THE CRYSTAL STRUCTURE OF 14-3-3-SIGMA AT 2.8 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STRATIFIN, EPITHELIAL CELL MARKER PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30XALIC KEYWDS HELIX BUNDLE, HOMODIMER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BENZINGER,G.M.POPOWICZ,T.A.HOLAK,H.HERMEKING REVDAT 5 25-OCT-23 1YZ5 1 REMARK REVDAT 4 11-OCT-17 1YZ5 1 REMARK REVDAT 3 24-FEB-09 1YZ5 1 VERSN REVDAT 2 24-MAY-05 1YZ5 1 JRNL REVDAT 1 08-MAR-05 1YZ5 0 JRNL AUTH A.BENZINGER,G.M.POPOWICZ,J.K.JOY,S.MAJUMDAR,T.A.HOLAK, JRNL AUTH 2 H.HERMEKING JRNL TITL THE CRYSTAL STRUCTURE OF THE NON-LIGANDED 14-3-3SIGMA JRNL TITL 2 PROTEIN: INSIGHTS INTO DETERMINANTS OF ISOFORM SPECIFIC JRNL TITL 3 LIGAND BINDING AND DIMERIZATION. JRNL REF CELL RES. V. 15 219 2005 JRNL REFN ISSN 1001-0602 JRNL PMID 15857576 JRNL DOI 10.1038/SJ.CR.7290290 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 748 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : 0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3473 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3099 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4663 ; 1.232 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7170 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 6.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.116 ;25.192 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;19.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;24.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3912 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 991 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3214 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1729 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1961 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2285 ; 0.480 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 919 ; 0.049 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3521 ; 0.855 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1350 ; 0.731 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1142 ; 1.225 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YZ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 63.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 1QJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 4000, 0.6M AMMONIUM SULFATE, REMARK 280 0.1M TRIS/HCL, PH 9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 GLU A 210 REMARK 465 ASP A 211 REMARK 465 SER A 212 REMARK 465 ASN A 234 REMARK 465 ALA A 235 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 ALA A 242 REMARK 465 PRO A 243 REMARK 465 GLN A 244 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 GLN A 247 REMARK 465 SER A 248 REMARK 465 MET B 1 REMARK 465 GLU B 72 REMARK 465 GLY B 73 REMARK 465 ASP B 233 REMARK 465 ASN B 234 REMARK 465 ALA B 235 REMARK 465 GLY B 236 REMARK 465 GLU B 237 REMARK 465 GLU B 238 REMARK 465 GLY B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 ALA B 242 REMARK 465 PRO B 243 REMARK 465 GLN B 244 REMARK 465 GLU B 245 REMARK 465 PRO B 246 REMARK 465 GLN B 247 REMARK 465 SER B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 GLU A 2 CG OE2 REMARK 470 ILE A 7 CD1 REMARK 470 GLN A 8 CG NE2 REMARK 470 ARG A 18 NH2 REMARK 470 ARG A 60 NH1 NH2 REMARK 470 ARG A 82 NH1 NH2 REMARK 470 LYS A 87 CE NZ REMARK 470 LEU A 107 CD1 REMARK 470 ILE A 108 O REMARK 470 LYS A 109 CD CE NZ REMARK 470 GLU A 110 O REMARK 470 ALA A 114 CB REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 124 NZ REMARK 470 VAL A 134 CG1 REMARK 470 ILE A 143 CD1 REMARK 470 LYS A 160 CD CE NZ REMARK 470 ASN A 185 OD1 ND2 REMARK 470 SER A 186 CB REMARK 470 LYS A 195 CD CE NZ REMARK 470 THR A 207 CG2 REMARK 470 LEU A 208 CG CD1 REMARK 470 SER A 209 CB REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LEU A 218 CD1 REMARK 470 GLN A 221 CD REMARK 470 LEU A 229 CD1 CD2 REMARK 470 THR A 231 CG2 REMARK 470 LYS B 9 CE REMARK 470 ARG B 18 NH2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LEU B 36 CD2 REMARK 470 ARG B 56 NH2 REMARK 470 ARG B 60 NH1 REMARK 470 SER B 63 OG REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CB CG CD CE NZ REMARK 470 VAL B 81 CG2 REMARK 470 THR B 90 CG2 REMARK 470 LYS B 109 O CD REMARK 470 GLU B 110 O CD OE1 OE2 REMARK 470 ALA B 111 N CB REMARK 470 ARG B 117 CG NH1 REMARK 470 ARG B 129 CD NE NH1 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 143 CD1 REMARK 470 LYS B 160 CD CE NZ REMARK 470 ASN B 185 OD1 REMARK 470 SER B 186 CB REMARK 470 GLU B 189 CB CG REMARK 470 LYS B 195 CE NZ REMARK 470 THR B 207 CG2 REMARK 470 LEU B 208 CG CD1 REMARK 470 SER B 209 CB REMARK 470 TYR B 213 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LEU B 218 CD1 REMARK 470 LEU B 227 CD2 REMARK 470 THR B 228 CG2 REMARK 470 LEU B 229 CG CD1 REMARK 470 THR B 231 CG2 REMARK 470 ALA B 232 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TYR A 213 O HOH A 283 1.91 REMARK 500 O THR B 165 OG SER B 216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 71.66 -100.09 REMARK 500 GLU A 66 -55.12 -173.13 REMARK 500 SER A 69 91.97 10.79 REMARK 500 GLU A 110 57.42 -98.93 REMARK 500 THR A 136 -66.86 -93.77 REMARK 500 ASP A 138 -50.59 -151.42 REMARK 500 ASP A 139 14.30 -68.05 REMARK 500 ASN A 185 51.09 38.12 REMARK 500 LEU A 208 139.03 -177.20 REMARK 500 GLU B 35 170.48 -54.16 REMARK 500 SER B 37 171.24 -58.00 REMARK 500 LYS B 68 89.08 -178.16 REMARK 500 HIS B 106 -56.68 -139.41 REMARK 500 ASP B 139 91.41 -63.41 REMARK 500 LYS B 140 -52.48 -169.26 REMARK 500 PRO B 164 -18.90 -49.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 109 GLU A 110 140.07 REMARK 500 SER B 74 GLU B 75 -148.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YZ5 A 1 248 UNP P31947 1433S_HUMAN 1 248 DBREF 1YZ5 B 1 248 UNP P31947 1433S_HUMAN 1 248 SEQRES 1 A 248 MET GLU ARG ALA SER LEU ILE GLN LYS ALA LYS LEU ALA SEQRES 2 A 248 GLU GLN ALA GLU ARG TYR GLU ASP MET ALA ALA PHE MET SEQRES 3 A 248 LYS GLY ALA VAL GLU LYS GLY GLU GLU LEU SER CYS GLU SEQRES 4 A 248 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 A 248 GLY GLY GLN ARG ALA ALA TRP ARG VAL LEU SER SER ILE SEQRES 6 A 248 GLU GLN LYS SER ASN GLU GLU GLY SER GLU GLU LYS GLY SEQRES 7 A 248 PRO GLU VAL ARG GLU TYR ARG GLU LYS VAL GLU THR GLU SEQRES 8 A 248 LEU GLN GLY VAL CYS ASP THR VAL LEU GLY LEU LEU ASP SEQRES 9 A 248 SER HIS LEU ILE LYS GLU ALA GLY ASP ALA GLU SER ARG SEQRES 10 A 248 VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR SEQRES 11 A 248 LEU ALA GLU VAL ALA THR GLY ASP ASP LYS LYS ARG ILE SEQRES 12 A 248 ILE ASP SER ALA ARG SER ALA TYR GLN GLU ALA MET ASP SEQRES 13 A 248 ILE SER LYS LYS GLU MET PRO PRO THR ASN PRO ILE ARG SEQRES 14 A 248 LEU GLY LEU ALA LEU ASN PHE SER VAL PHE HIS TYR GLU SEQRES 15 A 248 ILE ALA ASN SER PRO GLU GLU ALA ILE SER LEU ALA LYS SEQRES 16 A 248 THR THR PHE ASP GLU ALA MET ALA ASP LEU HIS THR LEU SEQRES 17 A 248 SER GLU ASP SER TYR LYS ASP SER THR LEU ILE MET GLN SEQRES 18 A 248 LEU LEU ARG ASP ASN LEU THR LEU TRP THR ALA ASP ASN SEQRES 19 A 248 ALA GLY GLU GLU GLY GLY GLU ALA PRO GLN GLU PRO GLN SEQRES 20 A 248 SER SEQRES 1 B 248 MET GLU ARG ALA SER LEU ILE GLN LYS ALA LYS LEU ALA SEQRES 2 B 248 GLU GLN ALA GLU ARG TYR GLU ASP MET ALA ALA PHE MET SEQRES 3 B 248 LYS GLY ALA VAL GLU LYS GLY GLU GLU LEU SER CYS GLU SEQRES 4 B 248 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 B 248 GLY GLY GLN ARG ALA ALA TRP ARG VAL LEU SER SER ILE SEQRES 6 B 248 GLU GLN LYS SER ASN GLU GLU GLY SER GLU GLU LYS GLY SEQRES 7 B 248 PRO GLU VAL ARG GLU TYR ARG GLU LYS VAL GLU THR GLU SEQRES 8 B 248 LEU GLN GLY VAL CYS ASP THR VAL LEU GLY LEU LEU ASP SEQRES 9 B 248 SER HIS LEU ILE LYS GLU ALA GLY ASP ALA GLU SER ARG SEQRES 10 B 248 VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR SEQRES 11 B 248 LEU ALA GLU VAL ALA THR GLY ASP ASP LYS LYS ARG ILE SEQRES 12 B 248 ILE ASP SER ALA ARG SER ALA TYR GLN GLU ALA MET ASP SEQRES 13 B 248 ILE SER LYS LYS GLU MET PRO PRO THR ASN PRO ILE ARG SEQRES 14 B 248 LEU GLY LEU ALA LEU ASN PHE SER VAL PHE HIS TYR GLU SEQRES 15 B 248 ILE ALA ASN SER PRO GLU GLU ALA ILE SER LEU ALA LYS SEQRES 16 B 248 THR THR PHE ASP GLU ALA MET ALA ASP LEU HIS THR LEU SEQRES 17 B 248 SER GLU ASP SER TYR LYS ASP SER THR LEU ILE MET GLN SEQRES 18 B 248 LEU LEU ARG ASP ASN LEU THR LEU TRP THR ALA ASP ASN SEQRES 19 B 248 ALA GLY GLU GLU GLY GLY GLU ALA PRO GLN GLU PRO GLN SEQRES 20 B 248 SER FORMUL 3 HOH *72(H2 O) HELIX 1 1 GLU A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 GLU A 31 1 14 HELIX 3 3 SER A 37 LYS A 68 1 32 HELIX 4 4 PRO A 79 LEU A 107 1 29 HELIX 5 5 ASP A 113 ALA A 135 1 23 HELIX 6 6 LYS A 140 MET A 162 1 23 HELIX 7 7 ASN A 166 ILE A 183 1 18 HELIX 8 8 SER A 186 ASP A 204 1 19 HELIX 9 9 TYR A 213 THR A 231 1 19 HELIX 10 10 GLU B 2 ALA B 16 1 15 HELIX 11 11 ARG B 18 LYS B 32 1 15 HELIX 12 12 SER B 37 GLN B 67 1 31 HELIX 13 13 LYS B 77 HIS B 106 1 30 HELIX 14 14 ASP B 113 GLU B 133 1 21 HELIX 15 15 LYS B 140 MET B 162 1 23 HELIX 16 16 ASN B 166 ILE B 183 1 18 HELIX 17 17 SER B 186 ALA B 203 1 18 HELIX 18 18 SER B 212 TRP B 230 1 19 CISPEP 1 LYS A 68 SER A 69 0 -21.15 CISPEP 2 LYS B 68 SER B 69 0 -15.86 CISPEP 3 GLU B 75 GLU B 76 0 -1.39 CISPEP 4 ALA B 111 GLY B 112 0 16.80 CISPEP 5 GLY B 137 ASP B 138 0 -0.95 CISPEP 6 ASP B 138 ASP B 139 0 9.86 CRYST1 71.650 80.850 99.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010088 0.00000