HEADER TRANSCRIPTION/DNA 28-FEB-05 1YZ8 OBSLTE 02-MAY-12 1YZ8 2LKX TITLE SOLUTION STRUCTURE OF THE K50 CLASS HOMEODOMAIN PITX2 BOUND TO DNA AND TITLE 2 IMPLICATIONS FOR MUTATIONS THAT CAUSE RIEGER SYNDROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PITUITARY HOMEOBOX 2; COMPND 3 CHAIN: P; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: RIEG BICOID-RELATED HOMEOBOX TRANSCRIPTION FACTOR, COMPND 6 SOLURSHIN, ALL1 RESPONSIVE PROTEIN ARP1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*TP*CP*TP*AP*AP*TP*CP*CP*CP*CP*G)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*GP*GP*GP*GP*AP*TP*TP*AP*GP*AP*GP*C)-3'; COMPND 14 CHAIN: A; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PITX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS DNA BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.A.CHANEY,K.CLARK-BALDWIN,V.DAVE,J.MA,M.RANCE REVDAT 4 02-MAY-12 1YZ8 1 OBSLTE VERSN REVDAT 3 24-FEB-09 1YZ8 1 VERSN REVDAT 2 02-AUG-05 1YZ8 1 JRNL REVDAT 1 03-MAY-05 1YZ8 0 JRNL AUTH B.A.CHANEY,K.CLARK-BALDWIN,V.DAVE,J.MA,M.RANCE JRNL TITL SOLUTION STRUCTURE OF THE K50 CLASS HOMEODOMAIN PITX2 BOUND JRNL TITL 2 TO DNA AND IMPLICATIONS FOR MUTATIONS THAT CAUSE RIEGER JRNL TITL 3 SYNDROME. JRNL REF BIOCHEMISTRY V. 44 7497 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15895993 JRNL DOI 10.1021/BI0473253 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.OTTING,Y.Q.QIAN,M.BILLETER,M.MUELLER,M.AFFOLTER, REMARK 1 AUTH 2 W.J.GEHRING,K.WUTHRICH REMARK 1 TITL PROTEIN-DNA CONTACTS IN THE STRUCTURE OF A HOMEODOMAIN-DNA REMARK 1 TITL 2 COMPLEX DETERMINED BY NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 3 SPECTROSCOPY IN SOLUTION REMARK 1 REF EMBO J. V. 9 3085 1990 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 1976507 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INPUT DATA CONSISTS OF 1259 UPPER REMARK 3 DISTANCE LIMIT CONSTRAINTS FROM NOE DATA, 292 INTRA-DNA REMARK 3 CONSTRAINTS AND 27 PROTEIN-DNA CONSTRAINTS. REMARK 4 REMARK 4 1YZ8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032097. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D NOESY; 3D TOCSY; 2D 13C- REMARK 210 EDITED [13C,15N]-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0.6, AMBER 7.0 REMARK 210 METHOD USED : DYANA TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : A COMBINATION OF LEAST REMARK 210 CONSTRAINT VIOLATIONS AND DYANA REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD2 ASP P 27 HG1 THR P 30 0.94 REMARK 500 HH12 ARG P 22 HD2 ASP P 66 1.05 REMARK 500 HE2 GLU P 42 HH21 ARG P 46 1.26 REMARK 500 OD2 ASP P 27 HG1 THR P 30 1.58 REMARK 500 HG1 THR P 65 OD1 ASP P 66 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG B 79 O3' DG B 79 C3' -0.326 REMARK 500 1 DC A 92 O3' DC A 92 C3' -0.325 REMARK 500 4 DG A 83 C5' DG A 83 C4' 0.047 REMARK 500 4 DG A 84 C5' DG A 84 C4' 0.044 REMARK 500 6 DG A 81 C5' DG A 81 C4' 0.047 REMARK 500 6 DG A 82 C5' DG A 82 C4' 0.044 REMARK 500 7 DG B 79 O3' DG B 79 C3' -0.327 REMARK 500 7 DG A 84 C5' DG A 84 C4' 0.043 REMARK 500 7 DG A 89 C5' DG A 89 C4' 0.045 REMARK 500 7 DC A 92 O3' DC A 92 C3' -0.327 REMARK 500 8 DG B 79 O3' DG B 79 C3' -0.327 REMARK 500 8 DG A 89 C5' DG A 89 C4' 0.043 REMARK 500 8 DC A 92 O3' DC A 92 C3' -0.327 REMARK 500 9 DA B 72 C5' DA B 72 C4' 0.050 REMARK 500 9 DG B 79 O3' DG B 79 C3' -0.326 REMARK 500 9 DA A 90 C5' DA A 90 C4' 0.047 REMARK 500 9 DC A 92 O3' DC A 92 C3' -0.327 REMARK 500 10 DG A 89 C5' DG A 89 C4' 0.049 REMARK 500 11 DA A 90 C5' DA A 90 C4' 0.044 REMARK 500 12 DG A 83 C5' DG A 83 C4' 0.042 REMARK 500 12 DG A 89 C5' DG A 89 C4' 0.049 REMARK 500 13 DG B 79 O3' DG B 79 C3' -0.326 REMARK 500 13 DC A 92 O3' DC A 92 C3' -0.326 REMARK 500 14 DG B 79 O3' DG B 79 C3' -0.328 REMARK 500 14 DA A 85 C5' DA A 85 C4' 0.043 REMARK 500 14 DC A 92 O3' DC A 92 C3' -0.328 REMARK 500 15 DG B 79 O3' DG B 79 C3' -0.326 REMARK 500 15 DG A 89 C5' DG A 89 C4' 0.052 REMARK 500 15 DC A 92 O3' DC A 92 C3' -0.330 REMARK 500 17 DG B 79 O3' DG B 79 C3' -0.327 REMARK 500 17 DC A 92 O3' DC A 92 C3' -0.328 REMARK 500 18 DA B 72 C5' DA B 72 C4' 0.043 REMARK 500 19 DG B 79 O3' DG B 79 C3' -0.330 REMARK 500 19 DC A 92 O3' DC A 92 C3' -0.325 REMARK 500 20 DG B 79 O3' DG B 79 C3' -0.327 REMARK 500 20 DG A 83 C5' DG A 83 C4' 0.042 REMARK 500 20 DC A 92 O3' DC A 92 C3' -0.327 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG B 67 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DC B 68 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DT B 69 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DT B 69 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DC B 68 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 1 DC B 70 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DC B 70 N3 - C4 - C5 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DC B 70 N1 - C2 - O2 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DC B 70 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DT B 71 C6 - C5 - C7 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DA B 72 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DA B 72 C4 - C5 - C6 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 DA B 72 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 72 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DA B 73 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DA B 73 C4 - C5 - C6 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 DA B 73 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA B 73 N1 - C6 - N6 ANGL. DEV. = -6.8 DEGREES REMARK 500 1 DA B 72 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 1 DC B 75 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DC B 75 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DC B 76 N1 - C2 - O2 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DC B 76 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DC B 77 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC B 77 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DC B 78 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 DC B 78 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DC B 78 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DC A 80 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DC A 80 O4' - C1' - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 1 DC A 80 N3 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC A 80 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DC A 80 N3 - C2 - O2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 DC A 80 N3 - C4 - N4 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DG A 81 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG A 82 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG A 82 N1 - C6 - O6 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DG A 83 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DG A 84 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DG A 84 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA A 85 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DA A 85 C4 - C5 - C6 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 DA A 85 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA A 85 N1 - C6 - N6 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 DT A 86 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DT A 86 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 DT A 87 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DT A 87 O4' - C1' - N1 ANGL. DEV. = 7.6 DEGREES REMARK 500 1 DT A 87 N3 - C2 - O2 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 DT A 87 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1144 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG P 2 95.15 120.35 REMARK 500 1 ARG P 3 -160.50 -77.49 REMARK 500 1 ARG P 5 16.57 -140.48 REMARK 500 1 PHE P 8 -91.11 -96.85 REMARK 500 1 ARG P 22 -61.73 -99.09 REMARK 500 1 ALA P 54 -71.41 -70.79 REMARK 500 1 GLU P 60 -14.18 -141.17 REMARK 500 1 VAL P 64 -65.04 66.33 REMARK 500 1 THR P 65 -52.22 -156.95 REMARK 500 2 SER P -1 102.94 -54.27 REMARK 500 2 ARG P 3 -167.69 -167.64 REMARK 500 2 GLN P 4 -38.32 123.26 REMARK 500 2 THR P 38 -75.26 -88.17 REMARK 500 2 ASN P 39 -8.30 139.13 REMARK 500 2 ASN P 51 -78.75 -74.96 REMARK 500 2 ALA P 54 -73.64 -52.43 REMARK 500 2 ARG P 59 15.78 123.80 REMARK 500 2 GLU P 61 -8.12 -48.96 REMARK 500 2 PHE P 62 21.15 -141.46 REMARK 500 2 THR P 65 -33.86 -171.29 REMARK 500 3 GLN P 4 -26.00 121.35 REMARK 500 3 ARG P 5 28.06 -75.61 REMARK 500 3 THR P 6 60.81 -69.22 REMARK 500 3 HIS P 7 43.38 -77.30 REMARK 500 3 THR P 9 26.84 -75.96 REMARK 500 3 SER P 10 -65.83 63.70 REMARK 500 3 THR P 19 -82.79 -66.39 REMARK 500 3 ARG P 22 -61.05 -132.55 REMARK 500 3 MET P 28 -67.13 58.67 REMARK 500 3 TRP P 37 2.25 -69.12 REMARK 500 3 GLU P 42 -107.50 27.27 REMARK 500 3 ASN P 51 -93.35 -55.25 REMARK 500 3 ARG P 59 -65.11 -153.34 REMARK 500 3 GLU P 61 -69.16 -27.10 REMARK 500 3 VAL P 64 -80.77 -72.41 REMARK 500 3 THR P 65 -33.06 -150.47 REMARK 500 4 SER P -1 -93.00 -46.89 REMARK 500 4 ARG P 3 -95.73 -145.40 REMARK 500 4 GLN P 4 -167.75 47.00 REMARK 500 4 ARG P 5 21.02 110.59 REMARK 500 4 THR P 6 41.23 -71.39 REMARK 500 4 HIS P 7 13.66 -63.76 REMARK 500 4 GLU P 17 2.99 -68.59 REMARK 500 4 GLN P 21 -62.01 -120.49 REMARK 500 4 THR P 38 -66.20 -129.33 REMARK 500 4 ASN P 39 -10.95 143.12 REMARK 500 4 ASN P 51 -79.08 -83.02 REMARK 500 4 ARG P 59 -26.22 175.83 REMARK 500 4 PHE P 62 -26.79 115.63 REMARK 500 4 ILE P 63 -71.94 38.99 REMARK 500 REMARK 500 THIS ENTRY HAS 223 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG P 24 TYR P 25 1 130.16 REMARK 500 PRO P 26 ASP P 27 1 144.41 REMARK 500 ARG P 59 GLU P 60 1 -140.90 REMARK 500 ARG P 2 ARG P 3 2 -149.08 REMARK 500 ARG P 24 TYR P 25 2 139.23 REMARK 500 THR P 65 ASP P 66 2 136.65 REMARK 500 ARG P 2 ARG P 3 3 -131.38 REMARK 500 ASP P 27 MET P 28 3 -146.72 REMARK 500 ARG P 2 ARG P 3 4 -133.18 REMARK 500 GLN P 4 ARG P 5 4 145.87 REMARK 500 PRO P 26 ASP P 27 4 139.72 REMARK 500 TRP P 48 PHE P 49 4 149.79 REMARK 500 ARG P 2 ARG P 3 5 -134.53 REMARK 500 GLN P 4 ARG P 5 5 -147.49 REMARK 500 ARG P 59 GLU P 60 6 -139.86 REMARK 500 ARG P 2 ARG P 3 7 -135.52 REMARK 500 ARG P 2 ARG P 3 8 -144.33 REMARK 500 ARG P 24 TYR P 25 8 146.46 REMARK 500 ARG P 59 GLU P 60 8 -135.26 REMARK 500 ARG P 2 ARG P 3 9 -140.74 REMARK 500 ARG P 2 ARG P 3 10 -133.30 REMARK 500 GLN P 4 ARG P 5 10 -147.57 REMARK 500 ARG P 2 ARG P 3 11 -148.41 REMARK 500 GLN P 4 ARG P 5 11 -147.27 REMARK 500 THR P 6 HIS P 7 11 -143.30 REMARK 500 GLN P 21 ARG P 22 11 -143.98 REMARK 500 ARG P 24 TYR P 25 11 -139.35 REMARK 500 TYR P 25 PRO P 26 11 31.51 REMARK 500 PRO P 26 ASP P 27 11 -112.63 REMARK 500 THR P 65 ASP P 66 11 134.96 REMARK 500 ARG P 2 ARG P 3 12 -133.54 REMARK 500 ARG P 24 TYR P 25 12 146.06 REMARK 500 ARG P 3 GLN P 4 13 -95.87 REMARK 500 TYR P 25 PRO P 26 13 -40.42 REMARK 500 LYS P 58 ARG P 59 13 143.57 REMARK 500 ARG P 24 TYR P 25 14 147.62 REMARK 500 PRO P 26 ASP P 27 14 142.45 REMARK 500 ARG P 2 ARG P 3 15 -143.54 REMARK 500 GLN P 12 LEU P 13 15 -148.85 REMARK 500 ARG P 24 TYR P 25 15 129.05 REMARK 500 ARG P 59 GLU P 60 15 -140.04 REMARK 500 ARG P 2 ARG P 3 16 -118.21 REMARK 500 ARG P 24 TYR P 25 16 131.55 REMARK 500 ARG P 2 ARG P 3 17 -141.19 REMARK 500 GLN P 4 ARG P 5 17 -145.62 REMARK 500 ARG P 5 THR P 6 17 147.00 REMARK 500 GLU P 61 PHE P 62 17 145.16 REMARK 500 ARG P 2 ARG P 3 18 -142.77 REMARK 500 ARG P 3 GLN P 4 18 -110.95 REMARK 500 ARG P 24 TYR P 25 18 143.54 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC B 68 0.10 SIDE CHAIN REMARK 500 1 DA B 72 0.17 SIDE CHAIN REMARK 500 1 DC B 76 0.07 SIDE CHAIN REMARK 500 1 DG B 79 0.06 SIDE CHAIN REMARK 500 1 DC A 80 0.09 SIDE CHAIN REMARK 500 1 DG A 81 0.09 SIDE CHAIN REMARK 500 1 DG A 84 0.10 SIDE CHAIN REMARK 500 1 DA A 88 0.07 SIDE CHAIN REMARK 500 1 DG A 89 0.12 SIDE CHAIN REMARK 500 1 DC A 92 0.12 SIDE CHAIN REMARK 500 1 ARG P 5 0.11 SIDE CHAIN REMARK 500 1 TYR P 25 0.08 SIDE CHAIN REMARK 500 2 DC B 70 0.11 SIDE CHAIN REMARK 500 2 DT B 71 0.13 SIDE CHAIN REMARK 500 2 DA B 72 0.14 SIDE CHAIN REMARK 500 2 DG B 79 0.07 SIDE CHAIN REMARK 500 2 DC A 80 0.08 SIDE CHAIN REMARK 500 2 DG A 81 0.10 SIDE CHAIN REMARK 500 2 DA A 85 0.07 SIDE CHAIN REMARK 500 2 DT A 86 0.07 SIDE CHAIN REMARK 500 2 DA A 88 0.07 SIDE CHAIN REMARK 500 2 DG A 89 0.09 SIDE CHAIN REMARK 500 2 DA A 90 0.08 SIDE CHAIN REMARK 500 2 DG A 91 0.07 SIDE CHAIN REMARK 500 2 DC A 92 0.10 SIDE CHAIN REMARK 500 3 DC B 68 0.10 SIDE CHAIN REMARK 500 3 DC B 70 0.10 SIDE CHAIN REMARK 500 3 DT B 71 0.10 SIDE CHAIN REMARK 500 3 DA B 72 0.17 SIDE CHAIN REMARK 500 3 DT B 74 0.07 SIDE CHAIN REMARK 500 3 DC B 78 0.09 SIDE CHAIN REMARK 500 3 DG A 82 0.06 SIDE CHAIN REMARK 500 3 DG A 84 0.07 SIDE CHAIN REMARK 500 3 DG A 89 0.13 SIDE CHAIN REMARK 500 3 DG A 91 0.07 SIDE CHAIN REMARK 500 3 DC A 92 0.10 SIDE CHAIN REMARK 500 3 ARG P 2 0.08 SIDE CHAIN REMARK 500 3 ARG P 22 0.13 SIDE CHAIN REMARK 500 3 ARG P 52 0.08 SIDE CHAIN REMARK 500 4 DC B 68 0.10 SIDE CHAIN REMARK 500 4 DC B 70 0.11 SIDE CHAIN REMARK 500 4 DT B 71 0.14 SIDE CHAIN REMARK 500 4 DA B 72 0.07 SIDE CHAIN REMARK 500 4 DT B 74 0.08 SIDE CHAIN REMARK 500 4 DG B 79 0.07 SIDE CHAIN REMARK 500 4 DC A 80 0.08 SIDE CHAIN REMARK 500 4 DG A 81 0.08 SIDE CHAIN REMARK 500 4 DG A 82 0.07 SIDE CHAIN REMARK 500 4 DG A 83 0.07 SIDE CHAIN REMARK 500 4 DT A 87 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 271 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 GLN P 4 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 1YZ8 P 1 60 UNP Q99697 PITX2_HUMAN 39 98 DBREF 1YZ8 B 67 79 PDB 1YZ8 1YZ8 67 79 DBREF 1YZ8 A 80 92 PDB 1YZ8 1YZ8 80 92 SEQADV 1YZ8 GLY P -2 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 SER P -1 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 GLU P 61 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 PHE P 62 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 ILE P 63 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 VAL P 64 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 THR P 65 UNP Q99697 CLONING ARTIFACT SEQADV 1YZ8 ASP P 66 UNP Q99697 CLONING ARTIFACT SEQRES 1 P 68 GLY SER GLN ARG ARG GLN ARG THR HIS PHE THR SER GLN SEQRES 2 P 68 GLN LEU GLN GLN LEU GLU ALA THR PHE GLN ARG ASN ARG SEQRES 3 P 68 TYR PRO ASP MET SER THR ARG GLU GLU ILE ALA VAL TRP SEQRES 4 P 68 THR ASN LEU THR GLU ALA ARG VAL ARG VAL TRP PHE LYS SEQRES 5 P 68 ASN ARG ARG ALA LYS TRP ARG LYS ARG GLU GLU PHE ILE SEQRES 6 P 68 VAL THR ASP SEQRES 1 B 13 DG DC DT DC DT DA DA DT DC DC DC DC DG SEQRES 1 A 13 DC DG DG DG DG DA DT DT DA DG DA DG DC HELIX 1 1 THR P 9 GLN P 21 1 13 HELIX 2 2 GLU P 32 THR P 38 1 7 HELIX 3 3 THR P 41 ARG P 53 1 13 HELIX 4 4 LYS P 55 GLU P 60 1 6 CISPEP 1 HIS P 7 PHE P 8 1 -25.15 CISPEP 2 THR P 6 HIS P 7 2 -0.94 CISPEP 3 THR P 6 HIS P 7 7 6.11 CISPEP 4 HIS P 7 PHE P 8 7 -14.74 CISPEP 5 THR P 6 HIS P 7 12 -19.77 CISPEP 6 GLY P -2 SER P -1 16 -9.78 CISPEP 7 SER P -1 GLN P 1 19 -9.94 CISPEP 8 THR P 6 HIS P 7 19 -15.26 CISPEP 9 GLY P -2 SER P -1 20 -2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1