data_1YZK # _entry.id 1YZK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YZK pdb_00001yzk 10.2210/pdb1yzk/pdb RCSB RCSB032109 ? ? WWPDB D_1000032109 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 5 'Structure model' '_struct_ref_seq_dif.details' 31 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YZK _pdbx_database_status.recvd_initial_deposition_date 2005-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eathiraj, S.' 1 'Pan, X.' 2 'Ritacco, C.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural basis of family-wide Rab GTPase recognition by rabenosyn-5.' _citation.journal_abbrev Nature _citation.journal_volume 436 _citation.page_first 415 _citation.page_last 419 _citation.year 2005 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16034420 _citation.pdbx_database_id_DOI 10.1038/nature03798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eathiraj, S.' 1 ? primary 'Pan, X.' 2 ? primary 'Ritacco, C.' 3 ? primary 'Lambright, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein Rab-11A' 20752.410 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 4 water nat water 18.015 219 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rab-11, YL8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHGSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI ETSALDSTNVEAAFQTILTEIYRI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHGSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI ETSALDSTNVEAAFQTILTEIYRI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLY n 1 10 SER n 1 11 LEU n 1 12 VAL n 1 13 PRO n 1 14 ARG n 1 15 GLY n 1 16 SER n 1 17 TYR n 1 18 ASP n 1 19 TYR n 1 20 LEU n 1 21 PHE n 1 22 LYS n 1 23 VAL n 1 24 VAL n 1 25 LEU n 1 26 ILE n 1 27 GLY n 1 28 ASP n 1 29 SER n 1 30 GLY n 1 31 VAL n 1 32 GLY n 1 33 LYS n 1 34 SER n 1 35 ASN n 1 36 LEU n 1 37 LEU n 1 38 SER n 1 39 ARG n 1 40 PHE n 1 41 THR n 1 42 ARG n 1 43 ASN n 1 44 GLU n 1 45 PHE n 1 46 ASN n 1 47 LEU n 1 48 GLU n 1 49 SER n 1 50 LYS n 1 51 SER n 1 52 THR n 1 53 ILE n 1 54 GLY n 1 55 VAL n 1 56 GLU n 1 57 PHE n 1 58 ALA n 1 59 THR n 1 60 ARG n 1 61 SER n 1 62 ILE n 1 63 GLN n 1 64 VAL n 1 65 ASP n 1 66 GLY n 1 67 LYS n 1 68 THR n 1 69 ILE n 1 70 LYS n 1 71 ALA n 1 72 GLN n 1 73 ILE n 1 74 TRP n 1 75 ASP n 1 76 THR n 1 77 ALA n 1 78 GLY n 1 79 GLN n 1 80 GLU n 1 81 ARG n 1 82 TYR n 1 83 ARG n 1 84 ALA n 1 85 ILE n 1 86 THR n 1 87 SER n 1 88 ALA n 1 89 TYR n 1 90 TYR n 1 91 ARG n 1 92 GLY n 1 93 ALA n 1 94 VAL n 1 95 GLY n 1 96 ALA n 1 97 LEU n 1 98 LEU n 1 99 VAL n 1 100 TYR n 1 101 ASP n 1 102 ILE n 1 103 ALA n 1 104 LYS n 1 105 HIS n 1 106 LEU n 1 107 THR n 1 108 TYR n 1 109 GLU n 1 110 ASN n 1 111 VAL n 1 112 GLU n 1 113 ARG n 1 114 TRP n 1 115 LEU n 1 116 LYS n 1 117 GLU n 1 118 LEU n 1 119 ARG n 1 120 ASP n 1 121 HIS n 1 122 ALA n 1 123 ASP n 1 124 SER n 1 125 ASN n 1 126 ILE n 1 127 VAL n 1 128 ILE n 1 129 MET n 1 130 LEU n 1 131 VAL n 1 132 GLY n 1 133 ASN n 1 134 LYS n 1 135 SER n 1 136 ASP n 1 137 LEU n 1 138 ARG n 1 139 HIS n 1 140 LEU n 1 141 ARG n 1 142 ALA n 1 143 VAL n 1 144 PRO n 1 145 THR n 1 146 ASP n 1 147 GLU n 1 148 ALA n 1 149 ARG n 1 150 ALA n 1 151 PHE n 1 152 ALA n 1 153 GLU n 1 154 LYS n 1 155 ASN n 1 156 GLY n 1 157 LEU n 1 158 SER n 1 159 PHE n 1 160 ILE n 1 161 GLU n 1 162 THR n 1 163 SER n 1 164 ALA n 1 165 LEU n 1 166 ASP n 1 167 SER n 1 168 THR n 1 169 ASN n 1 170 VAL n 1 171 GLU n 1 172 ALA n 1 173 ALA n 1 174 PHE n 1 175 GLN n 1 176 THR n 1 177 ILE n 1 178 LEU n 1 179 THR n 1 180 GLU n 1 181 ILE n 1 182 TYR n 1 183 ARG n 1 184 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'RAB11A, RAB11' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon Plus-RIL Cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET15b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -8 ? ? ? A . n A 1 2 GLY 2 -7 ? ? ? A . n A 1 3 HIS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 HIS 8 -1 ? ? ? A . n A 1 9 GLY 9 0 ? ? ? A . n A 1 10 SER 10 1 ? ? ? A . n A 1 11 LEU 11 2 ? ? ? A . n A 1 12 VAL 12 3 ? ? ? A . n A 1 13 PRO 13 4 ? ? ? A . n A 1 14 ARG 14 5 ? ? ? A . n A 1 15 GLY 15 6 ? ? ? A . n A 1 16 SER 16 7 ? ? ? A . n A 1 17 TYR 17 8 8 TYR TYR A . n A 1 18 ASP 18 9 9 ASP ASP A . n A 1 19 TYR 19 10 10 TYR TYR A . n A 1 20 LEU 20 11 11 LEU LEU A . n A 1 21 PHE 21 12 12 PHE PHE A . n A 1 22 LYS 22 13 13 LYS LYS A . n A 1 23 VAL 23 14 14 VAL VAL A . n A 1 24 VAL 24 15 15 VAL VAL A . n A 1 25 LEU 25 16 16 LEU LEU A . n A 1 26 ILE 26 17 17 ILE ILE A . n A 1 27 GLY 27 18 18 GLY GLY A . n A 1 28 ASP 28 19 19 ASP ASP A . n A 1 29 SER 29 20 20 SER SER A . n A 1 30 GLY 30 21 21 GLY GLY A . n A 1 31 VAL 31 22 22 VAL VAL A . n A 1 32 GLY 32 23 23 GLY GLY A . n A 1 33 LYS 33 24 24 LYS LYS A . n A 1 34 SER 34 25 25 SER SER A . n A 1 35 ASN 35 26 26 ASN ASN A . n A 1 36 LEU 36 27 27 LEU LEU A . n A 1 37 LEU 37 28 28 LEU LEU A . n A 1 38 SER 38 29 29 SER SER A . n A 1 39 ARG 39 30 30 ARG ARG A . n A 1 40 PHE 40 31 31 PHE PHE A . n A 1 41 THR 41 32 32 THR THR A . n A 1 42 ARG 42 33 33 ARG ARG A . n A 1 43 ASN 43 34 34 ASN ASN A . n A 1 44 GLU 44 35 35 GLU ALA A . n A 1 45 PHE 45 36 36 PHE PHE A . n A 1 46 ASN 46 37 37 ASN ASN A . n A 1 47 LEU 47 38 38 LEU LEU A . n A 1 48 GLU 48 39 39 GLU GLU A . n A 1 49 SER 49 40 40 SER SER A . n A 1 50 LYS 50 41 41 LYS ALA A . n A 1 51 SER 51 42 42 SER SER A . n A 1 52 THR 52 43 43 THR THR A . n A 1 53 ILE 53 44 44 ILE ILE A . n A 1 54 GLY 54 45 45 GLY GLY A . n A 1 55 VAL 55 46 46 VAL VAL A . n A 1 56 GLU 56 47 47 GLU GLU A . n A 1 57 PHE 57 48 48 PHE PHE A . n A 1 58 ALA 58 49 49 ALA ALA A . n A 1 59 THR 59 50 50 THR THR A . n A 1 60 ARG 60 51 51 ARG ARG A . n A 1 61 SER 61 52 52 SER SER A . n A 1 62 ILE 62 53 53 ILE ILE A . n A 1 63 GLN 63 54 54 GLN GLN A . n A 1 64 VAL 64 55 55 VAL VAL A . n A 1 65 ASP 65 56 56 ASP ASP A . n A 1 66 GLY 66 57 57 GLY GLY A . n A 1 67 LYS 67 58 58 LYS LYS A . n A 1 68 THR 68 59 59 THR THR A . n A 1 69 ILE 69 60 60 ILE ILE A . n A 1 70 LYS 70 61 61 LYS LYS A . n A 1 71 ALA 71 62 62 ALA ALA A . n A 1 72 GLN 72 63 63 GLN GLN A . n A 1 73 ILE 73 64 64 ILE ILE A . n A 1 74 TRP 74 65 65 TRP TRP A . n A 1 75 ASP 75 66 66 ASP ASP A . n A 1 76 THR 76 67 67 THR THR A . n A 1 77 ALA 77 68 68 ALA ALA A . n A 1 78 GLY 78 69 69 GLY GLY A . n A 1 79 GLN 79 70 70 GLN GLN A . n A 1 80 GLU 80 71 71 GLU GLU A . n A 1 81 ARG 81 72 72 ARG ARG A . n A 1 82 TYR 82 73 73 TYR TYR A . n A 1 83 ARG 83 74 74 ARG ARG A . n A 1 84 ALA 84 75 75 ALA ALA A . n A 1 85 ILE 85 76 76 ILE ILE A . n A 1 86 THR 86 77 77 THR THR A . n A 1 87 SER 87 78 78 SER SER A . n A 1 88 ALA 88 79 79 ALA ALA A . n A 1 89 TYR 89 80 80 TYR TYR A . n A 1 90 TYR 90 81 81 TYR TYR A . n A 1 91 ARG 91 82 82 ARG ARG A . n A 1 92 GLY 92 83 83 GLY GLY A . n A 1 93 ALA 93 84 84 ALA ALA A . n A 1 94 VAL 94 85 85 VAL VAL A . n A 1 95 GLY 95 86 86 GLY GLY A . n A 1 96 ALA 96 87 87 ALA ALA A . n A 1 97 LEU 97 88 88 LEU LEU A . n A 1 98 LEU 98 89 89 LEU LEU A . n A 1 99 VAL 99 90 90 VAL VAL A . n A 1 100 TYR 100 91 91 TYR TYR A . n A 1 101 ASP 101 92 92 ASP ASP A . n A 1 102 ILE 102 93 93 ILE ILE A . n A 1 103 ALA 103 94 94 ALA ALA A . n A 1 104 LYS 104 95 95 LYS LYS A . n A 1 105 HIS 105 96 96 HIS HIS A . n A 1 106 LEU 106 97 97 LEU LEU A . n A 1 107 THR 107 98 98 THR THR A . n A 1 108 TYR 108 99 99 TYR TYR A . n A 1 109 GLU 109 100 100 GLU GLU A . n A 1 110 ASN 110 101 101 ASN ASN A . n A 1 111 VAL 111 102 102 VAL VAL A . n A 1 112 GLU 112 103 103 GLU ALA A . n A 1 113 ARG 113 104 104 ARG ARG A . n A 1 114 TRP 114 105 105 TRP TRP A . n A 1 115 LEU 115 106 106 LEU LEU A . n A 1 116 LYS 116 107 107 LYS LYS A . n A 1 117 GLU 117 108 108 GLU GLU A . n A 1 118 LEU 118 109 109 LEU LEU A . n A 1 119 ARG 119 110 110 ARG ARG A . n A 1 120 ASP 120 111 111 ASP ASP A . n A 1 121 HIS 121 112 112 HIS HIS A . n A 1 122 ALA 122 113 113 ALA ALA A . n A 1 123 ASP 123 114 114 ASP ASP A . n A 1 124 SER 124 115 115 SER SER A . n A 1 125 ASN 125 116 116 ASN ASN A . n A 1 126 ILE 126 117 117 ILE ILE A . n A 1 127 VAL 127 118 118 VAL VAL A . n A 1 128 ILE 128 119 119 ILE ILE A . n A 1 129 MET 129 120 120 MET MET A . n A 1 130 LEU 130 121 121 LEU LEU A . n A 1 131 VAL 131 122 122 VAL VAL A . n A 1 132 GLY 132 123 123 GLY GLY A . n A 1 133 ASN 133 124 124 ASN ASN A . n A 1 134 LYS 134 125 125 LYS LYS A . n A 1 135 SER 135 126 126 SER SER A . n A 1 136 ASP 136 127 127 ASP ASP A . n A 1 137 LEU 137 128 128 LEU LEU A . n A 1 138 ARG 138 129 129 ARG ALA A . n A 1 139 HIS 139 130 130 HIS HIS A . n A 1 140 LEU 140 131 131 LEU LEU A . n A 1 141 ARG 141 132 132 ARG ARG A . n A 1 142 ALA 142 133 133 ALA ALA A . n A 1 143 VAL 143 134 134 VAL VAL A . n A 1 144 PRO 144 135 135 PRO PRO A . n A 1 145 THR 145 136 136 THR THR A . n A 1 146 ASP 146 137 137 ASP ASP A . n A 1 147 GLU 147 138 138 GLU GLU A . n A 1 148 ALA 148 139 139 ALA ALA A . n A 1 149 ARG 149 140 140 ARG ARG A . n A 1 150 ALA 150 141 141 ALA ALA A . n A 1 151 PHE 151 142 142 PHE PHE A . n A 1 152 ALA 152 143 143 ALA ALA A . n A 1 153 GLU 153 144 144 GLU ALA A . n A 1 154 LYS 154 145 145 LYS ALA A . n A 1 155 ASN 155 146 146 ASN ASN A . n A 1 156 GLY 156 147 147 GLY GLY A . n A 1 157 LEU 157 148 148 LEU LEU A . n A 1 158 SER 158 149 149 SER SER A . n A 1 159 PHE 159 150 150 PHE PHE A . n A 1 160 ILE 160 151 151 ILE ILE A . n A 1 161 GLU 161 152 152 GLU GLU A . n A 1 162 THR 162 153 153 THR THR A . n A 1 163 SER 163 154 154 SER SER A . n A 1 164 ALA 164 155 155 ALA ALA A . n A 1 165 LEU 165 156 156 LEU LEU A . n A 1 166 ASP 166 157 157 ASP ASP A . n A 1 167 SER 167 158 158 SER SER A . n A 1 168 THR 168 159 159 THR THR A . n A 1 169 ASN 169 160 160 ASN ASN A . n A 1 170 VAL 170 161 161 VAL VAL A . n A 1 171 GLU 171 162 162 GLU ALA A . n A 1 172 ALA 172 163 163 ALA ALA A . n A 1 173 ALA 173 164 164 ALA ALA A . n A 1 174 PHE 174 165 165 PHE PHE A . n A 1 175 GLN 175 166 166 GLN GLN A . n A 1 176 THR 176 167 167 THR THR A . n A 1 177 ILE 177 168 168 ILE ILE A . n A 1 178 LEU 178 169 169 LEU LEU A . n A 1 179 THR 179 170 170 THR THR A . n A 1 180 GLU 180 171 171 GLU GLU A . n A 1 181 ILE 181 172 172 ILE ILE A . n A 1 182 TYR 182 173 173 TYR TYR A . n A 1 183 ARG 183 174 174 ARG ARG A . n A 1 184 ILE 184 175 175 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 GNP 1 200 200 GNP GNP A . D 4 HOH 1 202 1 HOH HOH A . D 4 HOH 2 203 3 HOH HOH A . D 4 HOH 3 204 4 HOH HOH A . D 4 HOH 4 205 5 HOH HOH A . D 4 HOH 5 206 6 HOH HOH A . D 4 HOH 6 207 7 HOH HOH A . D 4 HOH 7 208 8 HOH HOH A . D 4 HOH 8 209 10 HOH HOH A . D 4 HOH 9 210 11 HOH HOH A . D 4 HOH 10 211 12 HOH HOH A . D 4 HOH 11 212 13 HOH HOH A . D 4 HOH 12 213 14 HOH HOH A . D 4 HOH 13 214 15 HOH HOH A . D 4 HOH 14 215 16 HOH HOH A . D 4 HOH 15 216 17 HOH HOH A . D 4 HOH 16 217 18 HOH HOH A . D 4 HOH 17 218 19 HOH HOH A . D 4 HOH 18 219 20 HOH HOH A . D 4 HOH 19 220 21 HOH HOH A . D 4 HOH 20 221 22 HOH HOH A . D 4 HOH 21 222 23 HOH HOH A . D 4 HOH 22 223 25 HOH HOH A . D 4 HOH 23 224 28 HOH HOH A . D 4 HOH 24 225 29 HOH HOH A . D 4 HOH 25 226 30 HOH HOH A . D 4 HOH 26 227 32 HOH HOH A . D 4 HOH 27 228 34 HOH HOH A . D 4 HOH 28 229 35 HOH HOH A . D 4 HOH 29 230 36 HOH HOH A . D 4 HOH 30 231 37 HOH HOH A . D 4 HOH 31 232 38 HOH HOH A . D 4 HOH 32 233 39 HOH HOH A . D 4 HOH 33 234 41 HOH HOH A . D 4 HOH 34 235 42 HOH HOH A . D 4 HOH 35 236 43 HOH HOH A . D 4 HOH 36 237 44 HOH HOH A . D 4 HOH 37 238 45 HOH HOH A . D 4 HOH 38 239 46 HOH HOH A . D 4 HOH 39 240 47 HOH HOH A . D 4 HOH 40 241 48 HOH HOH A . D 4 HOH 41 242 49 HOH HOH A . D 4 HOH 42 243 50 HOH HOH A . D 4 HOH 43 244 51 HOH HOH A . D 4 HOH 44 245 52 HOH HOH A . D 4 HOH 45 246 53 HOH HOH A . D 4 HOH 46 247 54 HOH HOH A . D 4 HOH 47 248 55 HOH HOH A . D 4 HOH 48 249 56 HOH HOH A . D 4 HOH 49 250 57 HOH HOH A . D 4 HOH 50 251 58 HOH HOH A . D 4 HOH 51 252 59 HOH HOH A . D 4 HOH 52 253 60 HOH HOH A . D 4 HOH 53 254 61 HOH HOH A . D 4 HOH 54 255 62 HOH HOH A . D 4 HOH 55 256 63 HOH HOH A . D 4 HOH 56 257 64 HOH HOH A . D 4 HOH 57 258 65 HOH HOH A . D 4 HOH 58 259 66 HOH HOH A . D 4 HOH 59 260 67 HOH HOH A . D 4 HOH 60 261 68 HOH HOH A . D 4 HOH 61 262 69 HOH HOH A . D 4 HOH 62 263 70 HOH HOH A . D 4 HOH 63 264 71 HOH HOH A . D 4 HOH 64 265 72 HOH HOH A . D 4 HOH 65 266 73 HOH HOH A . D 4 HOH 66 267 74 HOH HOH A . D 4 HOH 67 268 75 HOH HOH A . D 4 HOH 68 269 77 HOH HOH A . D 4 HOH 69 270 79 HOH HOH A . D 4 HOH 70 271 80 HOH HOH A . D 4 HOH 71 272 81 HOH HOH A . D 4 HOH 72 273 82 HOH HOH A . D 4 HOH 73 274 83 HOH HOH A . D 4 HOH 74 275 84 HOH HOH A . D 4 HOH 75 276 85 HOH HOH A . D 4 HOH 76 277 86 HOH HOH A . D 4 HOH 77 278 87 HOH HOH A . D 4 HOH 78 279 88 HOH HOH A . D 4 HOH 79 280 90 HOH HOH A . D 4 HOH 80 281 92 HOH HOH A . D 4 HOH 81 282 93 HOH HOH A . D 4 HOH 82 283 94 HOH HOH A . D 4 HOH 83 284 95 HOH HOH A . D 4 HOH 84 285 96 HOH HOH A . D 4 HOH 85 286 97 HOH HOH A . D 4 HOH 86 287 98 HOH HOH A . D 4 HOH 87 288 99 HOH HOH A . D 4 HOH 88 289 100 HOH HOH A . D 4 HOH 89 290 101 HOH HOH A . D 4 HOH 90 291 102 HOH HOH A . D 4 HOH 91 292 103 HOH HOH A . D 4 HOH 92 293 104 HOH HOH A . D 4 HOH 93 294 105 HOH HOH A . D 4 HOH 94 295 106 HOH HOH A . D 4 HOH 95 296 108 HOH HOH A . D 4 HOH 96 297 109 HOH HOH A . D 4 HOH 97 298 111 HOH HOH A . D 4 HOH 98 299 112 HOH HOH A . D 4 HOH 99 300 113 HOH HOH A . D 4 HOH 100 301 114 HOH HOH A . D 4 HOH 101 302 115 HOH HOH A . D 4 HOH 102 303 116 HOH HOH A . D 4 HOH 103 304 117 HOH HOH A . D 4 HOH 104 305 118 HOH HOH A . D 4 HOH 105 306 119 HOH HOH A . D 4 HOH 106 307 121 HOH HOH A . D 4 HOH 107 308 122 HOH HOH A . D 4 HOH 108 309 123 HOH HOH A . D 4 HOH 109 310 124 HOH HOH A . D 4 HOH 110 311 125 HOH HOH A . D 4 HOH 111 312 126 HOH HOH A . D 4 HOH 112 313 127 HOH HOH A . D 4 HOH 113 314 128 HOH HOH A . D 4 HOH 114 315 129 HOH HOH A . D 4 HOH 115 316 130 HOH HOH A . D 4 HOH 116 317 131 HOH HOH A . D 4 HOH 117 318 133 HOH HOH A . D 4 HOH 118 319 134 HOH HOH A . D 4 HOH 119 320 135 HOH HOH A . D 4 HOH 120 321 136 HOH HOH A . D 4 HOH 121 322 138 HOH HOH A . D 4 HOH 122 323 139 HOH HOH A . D 4 HOH 123 324 140 HOH HOH A . D 4 HOH 124 325 142 HOH HOH A . D 4 HOH 125 326 144 HOH HOH A . D 4 HOH 126 327 146 HOH HOH A . D 4 HOH 127 328 148 HOH HOH A . D 4 HOH 128 329 149 HOH HOH A . D 4 HOH 129 330 150 HOH HOH A . D 4 HOH 130 331 151 HOH HOH A . D 4 HOH 131 332 154 HOH HOH A . D 4 HOH 132 333 155 HOH HOH A . D 4 HOH 133 334 156 HOH HOH A . D 4 HOH 134 335 157 HOH HOH A . D 4 HOH 135 336 158 HOH HOH A . D 4 HOH 136 337 159 HOH HOH A . D 4 HOH 137 338 160 HOH HOH A . D 4 HOH 138 339 161 HOH HOH A . D 4 HOH 139 340 162 HOH HOH A . D 4 HOH 140 341 164 HOH HOH A . D 4 HOH 141 342 165 HOH HOH A . D 4 HOH 142 343 166 HOH HOH A . D 4 HOH 143 344 168 HOH HOH A . D 4 HOH 144 345 170 HOH HOH A . D 4 HOH 145 346 171 HOH HOH A . D 4 HOH 146 347 172 HOH HOH A . D 4 HOH 147 348 173 HOH HOH A . D 4 HOH 148 349 176 HOH HOH A . D 4 HOH 149 350 177 HOH HOH A . D 4 HOH 150 351 178 HOH HOH A . D 4 HOH 151 352 179 HOH HOH A . D 4 HOH 152 353 181 HOH HOH A . D 4 HOH 153 354 183 HOH HOH A . D 4 HOH 154 355 184 HOH HOH A . D 4 HOH 155 356 185 HOH HOH A . D 4 HOH 156 357 186 HOH HOH A . D 4 HOH 157 358 187 HOH HOH A . D 4 HOH 158 359 188 HOH HOH A . D 4 HOH 159 360 189 HOH HOH A . D 4 HOH 160 361 190 HOH HOH A . D 4 HOH 161 362 193 HOH HOH A . D 4 HOH 162 363 194 HOH HOH A . D 4 HOH 163 364 195 HOH HOH A . D 4 HOH 164 365 196 HOH HOH A . D 4 HOH 165 366 198 HOH HOH A . D 4 HOH 166 367 199 HOH HOH A . D 4 HOH 167 368 202 HOH HOH A . D 4 HOH 168 369 205 HOH HOH A . D 4 HOH 169 370 206 HOH HOH A . D 4 HOH 170 371 208 HOH HOH A . D 4 HOH 171 372 209 HOH HOH A . D 4 HOH 172 373 211 HOH HOH A . D 4 HOH 173 374 212 HOH HOH A . D 4 HOH 174 375 217 HOH HOH A . D 4 HOH 175 376 220 HOH HOH A . D 4 HOH 176 377 223 HOH HOH A . D 4 HOH 177 378 224 HOH HOH A . D 4 HOH 178 379 225 HOH HOH A . D 4 HOH 179 380 227 HOH HOH A . D 4 HOH 180 381 228 HOH HOH A . D 4 HOH 181 382 233 HOH HOH A . D 4 HOH 182 383 234 HOH HOH A . D 4 HOH 183 384 235 HOH HOH A . D 4 HOH 184 385 238 HOH HOH A . D 4 HOH 185 386 240 HOH HOH A . D 4 HOH 186 387 242 HOH HOH A . D 4 HOH 187 388 243 HOH HOH A . D 4 HOH 188 389 247 HOH HOH A . D 4 HOH 189 390 248 HOH HOH A . D 4 HOH 190 391 249 HOH HOH A . D 4 HOH 191 392 257 HOH HOH A . D 4 HOH 192 393 258 HOH HOH A . D 4 HOH 193 394 259 HOH HOH A . D 4 HOH 194 395 260 HOH HOH A . D 4 HOH 195 396 263 HOH HOH A . D 4 HOH 196 397 265 HOH HOH A . D 4 HOH 197 398 268 HOH HOH A . D 4 HOH 198 399 271 HOH HOH A . D 4 HOH 199 400 273 HOH HOH A . D 4 HOH 200 401 274 HOH HOH A . D 4 HOH 201 402 277 HOH HOH A . D 4 HOH 202 403 278 HOH HOH A . D 4 HOH 203 404 280 HOH HOH A . D 4 HOH 204 405 287 HOH HOH A . D 4 HOH 205 406 291 HOH HOH A . D 4 HOH 206 407 298 HOH HOH A . D 4 HOH 207 408 305 HOH HOH A . D 4 HOH 208 409 316 HOH HOH A . D 4 HOH 209 410 319 HOH HOH A . D 4 HOH 210 411 321 HOH HOH A . D 4 HOH 211 412 322 HOH HOH A . D 4 HOH 212 413 331 HOH HOH A . D 4 HOH 213 414 341 HOH HOH A . D 4 HOH 214 415 342 HOH HOH A . D 4 HOH 215 416 343 HOH HOH A . D 4 HOH 216 417 344 HOH HOH A . D 4 HOH 217 418 345 HOH HOH A . D 4 HOH 218 419 346 HOH HOH A . D 4 HOH 219 420 347 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 35 ? CG ? A GLU 44 CG 2 1 Y 1 A GLU 35 ? CD ? A GLU 44 CD 3 1 Y 1 A GLU 35 ? OE1 ? A GLU 44 OE1 4 1 Y 1 A GLU 35 ? OE2 ? A GLU 44 OE2 5 1 Y 1 A LYS 41 ? CG ? A LYS 50 CG 6 1 Y 1 A LYS 41 ? CD ? A LYS 50 CD 7 1 Y 1 A LYS 41 ? CE ? A LYS 50 CE 8 1 Y 1 A LYS 41 ? NZ ? A LYS 50 NZ 9 1 Y 1 A GLU 103 ? CG ? A GLU 112 CG 10 1 Y 1 A GLU 103 ? CD ? A GLU 112 CD 11 1 Y 1 A GLU 103 ? OE1 ? A GLU 112 OE1 12 1 Y 1 A GLU 103 ? OE2 ? A GLU 112 OE2 13 1 Y 1 A ARG 129 ? CG ? A ARG 138 CG 14 1 Y 1 A ARG 129 ? CD ? A ARG 138 CD 15 1 Y 1 A ARG 129 ? NE ? A ARG 138 NE 16 1 Y 1 A ARG 129 ? CZ ? A ARG 138 CZ 17 1 Y 1 A ARG 129 ? NH1 ? A ARG 138 NH1 18 1 Y 1 A ARG 129 ? NH2 ? A ARG 138 NH2 19 1 Y 1 A GLU 144 ? CG ? A GLU 153 CG 20 1 Y 1 A GLU 144 ? CD ? A GLU 153 CD 21 1 Y 1 A GLU 144 ? OE1 ? A GLU 153 OE1 22 1 Y 1 A GLU 144 ? OE2 ? A GLU 153 OE2 23 1 Y 1 A LYS 145 ? CG ? A LYS 154 CG 24 1 Y 1 A LYS 145 ? CD ? A LYS 154 CD 25 1 Y 1 A LYS 145 ? CE ? A LYS 154 CE 26 1 Y 1 A LYS 145 ? NZ ? A LYS 154 NZ 27 1 Y 1 A GLU 162 ? CG ? A GLU 171 CG 28 1 Y 1 A GLU 162 ? CD ? A GLU 171 CD 29 1 Y 1 A GLU 162 ? OE1 ? A GLU 171 OE1 30 1 Y 1 A GLU 162 ? OE2 ? A GLU 171 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1YZK _cell.length_a 73.946 _cell.length_b 73.946 _cell.length_c 148.197 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZK _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YZK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 54.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'NaCl, Glycerol, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 4K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2003-06-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'confocal blue optic device' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YZK _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 14293 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.058 _reflns.pdbx_netI_over_sigmaI 31.6 _reflns.B_iso_Wilson_estimate 34.1 _reflns.pdbx_redundancy 7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.252 _reflns_shell.meanI_over_sigI_obs 7.6 _reflns_shell.pdbx_redundancy 7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1139 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YZK _refine.ls_number_reflns_obs 12992 _refine.ls_number_reflns_all 14295 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.81 _refine.ls_R_factor_obs 0.18006 _refine.ls_R_factor_all 0.197 _refine.ls_R_factor_R_work 0.17753 _refine.ls_R_factor_R_free 0.22829 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 697 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 22.315 _refine.aniso_B[1][1] -0.30 _refine.aniso_B[2][2] -0.30 _refine.aniso_B[3][3] 0.60 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Polyalanine Rab5c' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.174 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.105 _refine.overall_SU_B 3.692 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1309 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 219 _refine_hist.number_atoms_total 1561 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 6.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1365 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1241 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.067 1.970 ? 1859 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.723 3.000 ? 2855 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.213 5.000 ? 167 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.010 23.115 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.381 15.000 ? 220 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.849 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.056 0.200 ? 215 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1508 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 293 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 268 'X-RAY DIFFRACTION' ? r_nbd_other 0.170 0.200 ? 1240 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.174 0.200 ? 665 'X-RAY DIFFRACTION' ? r_nbtor_other 0.077 0.200 ? 797 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 152 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.062 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.139 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.294 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.188 0.200 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.686 1.500 ? 1084 'X-RAY DIFFRACTION' ? r_mcbond_other 0.081 1.500 ? 347 'X-RAY DIFFRACTION' ? r_mcangle_it 0.723 2.000 ? 1328 'X-RAY DIFFRACTION' ? r_scbond_it 1.196 3.000 ? 644 'X-RAY DIFFRACTION' ? r_scangle_it 1.782 4.500 ? 531 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.046 _refine_ls_shell.number_reflns_R_work 837 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs 97.14 _refine_ls_shell.R_factor_R_free 0.272 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YZK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YZK _struct.title 'GppNHp bound Rab11 GTPase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YZK _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Rab GTPase, Rab11, Vesicular trafficking, protein transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RB11A_HUMAN _struct_ref.pdbx_db_accession P62491 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT ILTEIYRI ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YZK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 17 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62491 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YZK MET A 1 ? UNP P62491 ? ? 'cloning artifact' -8 1 1 1YZK GLY A 2 ? UNP P62491 ? ? 'cloning artifact' -7 2 1 1YZK HIS A 3 ? UNP P62491 ? ? 'cloning artifact' -6 3 1 1YZK HIS A 4 ? UNP P62491 ? ? 'cloning artifact' -5 4 1 1YZK HIS A 5 ? UNP P62491 ? ? 'cloning artifact' -4 5 1 1YZK HIS A 6 ? UNP P62491 ? ? 'cloning artifact' -3 6 1 1YZK HIS A 7 ? UNP P62491 ? ? 'cloning artifact' -2 7 1 1YZK HIS A 8 ? UNP P62491 ? ? 'cloning artifact' -1 8 1 1YZK GLY A 9 ? UNP P62491 ? ? 'cloning artifact' 0 9 1 1YZK SER A 10 ? UNP P62491 ? ? 'cloning artifact' 1 10 1 1YZK LEU A 11 ? UNP P62491 ? ? 'cloning artifact' 2 11 1 1YZK VAL A 12 ? UNP P62491 ? ? 'cloning artifact' 3 12 1 1YZK PRO A 13 ? UNP P62491 ? ? 'cloning artifact' 4 13 1 1YZK ARG A 14 ? UNP P62491 ? ? 'cloning artifact' 5 14 1 1YZK GLY A 15 ? UNP P62491 ? ? 'cloning artifact' 6 15 1 1YZK SER A 16 ? UNP P62491 ? ? 'cloning artifact' 7 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 32 ? ASN A 43 ? GLY A 23 ASN A 34 1 ? 12 HELX_P HELX_P2 2 THR A 86 ? ARG A 91 ? THR A 77 ARG A 82 1 ? 6 HELX_P HELX_P3 3 LYS A 104 ? ASN A 110 ? LYS A 95 ASN A 101 1 ? 7 HELX_P HELX_P4 4 ASN A 110 ? ALA A 122 ? ASN A 101 ALA A 113 1 ? 13 HELX_P HELX_P5 5 LYS A 134 ? ARG A 141 ? LYS A 125 ARG A 132 5 ? 8 HELX_P HELX_P6 6 PRO A 144 ? ASN A 155 ? PRO A 135 ASN A 146 1 ? 12 HELX_P HELX_P7 7 ASN A 169 ? ILE A 184 ? ASN A 160 ILE A 175 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 34 OG ? ? ? 1_555 B MG . MG ? ? A SER 25 A MG 201 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc2 metalc ? ? A THR 52 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 43 A MG 201 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc3 metalc ? ? C GNP . O2G ? ? ? 1_555 B MG . MG ? ? A GNP 200 A MG 201 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc4 metalc ? ? C GNP . O2B ? ? ? 1_555 B MG . MG ? ? A GNP 200 A MG 201 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 216 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 231 1_555 ? ? ? ? ? ? ? 2.164 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 34 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OG1 ? A THR 52 ? A THR 43 ? 1_555 77.4 ? 2 OG ? A SER 34 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2G ? C GNP . ? A GNP 200 ? 1_555 169.8 ? 3 OG1 ? A THR 52 ? A THR 43 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2G ? C GNP . ? A GNP 200 ? 1_555 92.4 ? 4 OG ? A SER 34 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2B ? C GNP . ? A GNP 200 ? 1_555 89.6 ? 5 OG1 ? A THR 52 ? A THR 43 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2B ? C GNP . ? A GNP 200 ? 1_555 167.0 ? 6 O2G ? C GNP . ? A GNP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2B ? C GNP . ? A GNP 200 ? 1_555 100.7 ? 7 OG ? A SER 34 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 216 ? 1_555 90.0 ? 8 OG1 ? A THR 52 ? A THR 43 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 216 ? 1_555 86.0 ? 9 O2G ? C GNP . ? A GNP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 216 ? 1_555 89.3 ? 10 O2B ? C GNP . ? A GNP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 216 ? 1_555 94.4 ? 11 OG ? A SER 34 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 86.7 ? 12 OG1 ? A THR 52 ? A THR 43 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 91.9 ? 13 O2G ? C GNP . ? A GNP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 93.7 ? 14 O2B ? C GNP . ? A GNP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 87.0 ? 15 O ? D HOH . ? A HOH 216 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 231 ? 1_555 176.4 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 55 ? VAL A 64 ? VAL A 46 VAL A 55 A 2 LYS A 67 ? THR A 76 ? LYS A 58 THR A 67 A 3 TYR A 19 ? ILE A 26 ? TYR A 10 ILE A 17 A 4 ALA A 93 ? ASP A 101 ? ALA A 84 ASP A 92 A 5 VAL A 127 ? ASN A 133 ? VAL A 118 ASN A 124 A 6 SER A 158 ? GLU A 161 ? SER A 149 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 62 ? N ILE A 53 O ILE A 69 ? O ILE A 60 A 2 3 O TRP A 74 ? O TRP A 65 N VAL A 23 ? N VAL A 14 A 3 4 N ILE A 26 ? N ILE A 17 O VAL A 99 ? O VAL A 90 A 4 5 N LEU A 98 ? N LEU A 89 O VAL A 131 ? O VAL A 122 A 5 6 N LEU A 130 ? N LEU A 121 O SER A 158 ? O SER A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 5 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software A GNP 200 ? 31 'BINDING SITE FOR RESIDUE GNP A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 34 ? SER A 25 . ? 1_555 ? 2 AC1 5 THR A 52 ? THR A 43 . ? 1_555 ? 3 AC1 5 GNP C . ? GNP A 200 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 216 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 231 . ? 1_555 ? 6 AC2 31 SER A 29 ? SER A 20 . ? 1_555 ? 7 AC2 31 GLY A 30 ? GLY A 21 . ? 1_555 ? 8 AC2 31 VAL A 31 ? VAL A 22 . ? 1_555 ? 9 AC2 31 GLY A 32 ? GLY A 23 . ? 1_555 ? 10 AC2 31 LYS A 33 ? LYS A 24 . ? 1_555 ? 11 AC2 31 SER A 34 ? SER A 25 . ? 1_555 ? 12 AC2 31 ASN A 35 ? ASN A 26 . ? 1_555 ? 13 AC2 31 PHE A 45 ? PHE A 36 . ? 1_555 ? 14 AC2 31 ASN A 46 ? ASN A 37 . ? 1_555 ? 15 AC2 31 LEU A 47 ? LEU A 38 . ? 1_555 ? 16 AC2 31 SER A 49 ? SER A 40 . ? 1_555 ? 17 AC2 31 SER A 51 ? SER A 42 . ? 1_555 ? 18 AC2 31 THR A 52 ? THR A 43 . ? 1_555 ? 19 AC2 31 ALA A 77 ? ALA A 68 . ? 1_555 ? 20 AC2 31 GLY A 78 ? GLY A 69 . ? 1_555 ? 21 AC2 31 ASN A 133 ? ASN A 124 . ? 1_555 ? 22 AC2 31 LYS A 134 ? LYS A 125 . ? 1_555 ? 23 AC2 31 ASP A 136 ? ASP A 127 . ? 1_555 ? 24 AC2 31 LEU A 137 ? LEU A 128 . ? 1_555 ? 25 AC2 31 SER A 163 ? SER A 154 . ? 1_555 ? 26 AC2 31 ALA A 164 ? ALA A 155 . ? 1_555 ? 27 AC2 31 LEU A 165 ? LEU A 156 . ? 1_555 ? 28 AC2 31 MG B . ? MG A 201 . ? 1_555 ? 29 AC2 31 HOH D . ? HOH A 216 . ? 1_555 ? 30 AC2 31 HOH D . ? HOH A 218 . ? 1_555 ? 31 AC2 31 HOH D . ? HOH A 231 . ? 1_555 ? 32 AC2 31 HOH D . ? HOH A 258 . ? 1_555 ? 33 AC2 31 HOH D . ? HOH A 273 . ? 1_555 ? 34 AC2 31 HOH D . ? HOH A 305 . ? 1_555 ? 35 AC2 31 HOH D . ? HOH A 359 . ? 7_555 ? 36 AC2 31 HOH D . ? HOH A 399 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 255 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 268 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 125 ? ? 72.21 37.82 2 1 LEU A 128 ? ? -93.13 35.57 3 1 SER A 158 ? ? 79.15 -5.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -8 ? A MET 1 2 1 Y 1 A GLY -7 ? A GLY 2 3 1 Y 1 A HIS -6 ? A HIS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A HIS -1 ? A HIS 8 9 1 Y 1 A GLY 0 ? A GLY 9 10 1 Y 1 A SER 1 ? A SER 10 11 1 Y 1 A LEU 2 ? A LEU 11 12 1 Y 1 A VAL 3 ? A VAL 12 13 1 Y 1 A PRO 4 ? A PRO 13 14 1 Y 1 A ARG 5 ? A ARG 14 15 1 Y 1 A GLY 6 ? A GLY 15 16 1 Y 1 A SER 7 ? A SER 16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GNP PG P N N 123 GNP O1G O N N 124 GNP O2G O N N 125 GNP O3G O N N 126 GNP N3B N N N 127 GNP PB P N R 128 GNP O1B O N N 129 GNP O2B O N N 130 GNP O3A O N N 131 GNP PA P N S 132 GNP O1A O N N 133 GNP O2A O N N 134 GNP "O5'" O N N 135 GNP "C5'" C N N 136 GNP "C4'" C N R 137 GNP "O4'" O N N 138 GNP "C3'" C N S 139 GNP "O3'" O N N 140 GNP "C2'" C N R 141 GNP "O2'" O N N 142 GNP "C1'" C N R 143 GNP N9 N Y N 144 GNP C8 C Y N 145 GNP N7 N Y N 146 GNP C5 C Y N 147 GNP C6 C Y N 148 GNP O6 O N N 149 GNP N1 N Y N 150 GNP C2 C Y N 151 GNP N2 N N N 152 GNP N3 N Y N 153 GNP C4 C Y N 154 GNP HOG2 H N N 155 GNP HOG3 H N N 156 GNP HNB3 H N N 157 GNP HOB2 H N N 158 GNP HOA2 H N N 159 GNP "H5'2" H N N 160 GNP "H5'1" H N N 161 GNP "H4'" H N N 162 GNP "H3'" H N N 163 GNP "HO3'" H N N 164 GNP "H2'" H N N 165 GNP "HO2'" H N N 166 GNP "H1'" H N N 167 GNP H8 H N N 168 GNP HN1 H N N 169 GNP HN21 H N N 170 GNP HN22 H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LYS N N N N 240 LYS CA C N S 241 LYS C C N N 242 LYS O O N N 243 LYS CB C N N 244 LYS CG C N N 245 LYS CD C N N 246 LYS CE C N N 247 LYS NZ N N N 248 LYS OXT O N N 249 LYS H H N N 250 LYS H2 H N N 251 LYS HA H N N 252 LYS HB2 H N N 253 LYS HB3 H N N 254 LYS HG2 H N N 255 LYS HG3 H N N 256 LYS HD2 H N N 257 LYS HD3 H N N 258 LYS HE2 H N N 259 LYS HE3 H N N 260 LYS HZ1 H N N 261 LYS HZ2 H N N 262 LYS HZ3 H N N 263 LYS HXT H N N 264 MET N N N N 265 MET CA C N S 266 MET C C N N 267 MET O O N N 268 MET CB C N N 269 MET CG C N N 270 MET SD S N N 271 MET CE C N N 272 MET OXT O N N 273 MET H H N N 274 MET H2 H N N 275 MET HA H N N 276 MET HB2 H N N 277 MET HB3 H N N 278 MET HG2 H N N 279 MET HG3 H N N 280 MET HE1 H N N 281 MET HE2 H N N 282 MET HE3 H N N 283 MET HXT H N N 284 MG MG MG N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GNP PG O1G doub N N 116 GNP PG O2G sing N N 117 GNP PG O3G sing N N 118 GNP PG N3B sing N N 119 GNP O2G HOG2 sing N N 120 GNP O3G HOG3 sing N N 121 GNP N3B PB sing N N 122 GNP N3B HNB3 sing N N 123 GNP PB O1B doub N N 124 GNP PB O2B sing N N 125 GNP PB O3A sing N N 126 GNP O2B HOB2 sing N N 127 GNP O3A PA sing N N 128 GNP PA O1A doub N N 129 GNP PA O2A sing N N 130 GNP PA "O5'" sing N N 131 GNP O2A HOA2 sing N N 132 GNP "O5'" "C5'" sing N N 133 GNP "C5'" "C4'" sing N N 134 GNP "C5'" "H5'2" sing N N 135 GNP "C5'" "H5'1" sing N N 136 GNP "C4'" "O4'" sing N N 137 GNP "C4'" "C3'" sing N N 138 GNP "C4'" "H4'" sing N N 139 GNP "O4'" "C1'" sing N N 140 GNP "C3'" "O3'" sing N N 141 GNP "C3'" "C2'" sing N N 142 GNP "C3'" "H3'" sing N N 143 GNP "O3'" "HO3'" sing N N 144 GNP "C2'" "O2'" sing N N 145 GNP "C2'" "C1'" sing N N 146 GNP "C2'" "H2'" sing N N 147 GNP "O2'" "HO2'" sing N N 148 GNP "C1'" N9 sing N N 149 GNP "C1'" "H1'" sing N N 150 GNP N9 C8 sing Y N 151 GNP N9 C4 sing Y N 152 GNP C8 N7 doub Y N 153 GNP C8 H8 sing N N 154 GNP N7 C5 sing Y N 155 GNP C5 C6 sing Y N 156 GNP C5 C4 doub Y N 157 GNP C6 O6 doub N N 158 GNP C6 N1 sing Y N 159 GNP N1 C2 sing Y N 160 GNP N1 HN1 sing N N 161 GNP C2 N2 sing N N 162 GNP C2 N3 doub Y N 163 GNP N2 HN21 sing N N 164 GNP N2 HN22 sing N N 165 GNP N3 C4 sing Y N 166 HIS N CA sing N N 167 HIS N H sing N N 168 HIS N H2 sing N N 169 HIS CA C sing N N 170 HIS CA CB sing N N 171 HIS CA HA sing N N 172 HIS C O doub N N 173 HIS C OXT sing N N 174 HIS CB CG sing N N 175 HIS CB HB2 sing N N 176 HIS CB HB3 sing N N 177 HIS CG ND1 sing Y N 178 HIS CG CD2 doub Y N 179 HIS ND1 CE1 doub Y N 180 HIS ND1 HD1 sing N N 181 HIS CD2 NE2 sing Y N 182 HIS CD2 HD2 sing N N 183 HIS CE1 NE2 sing Y N 184 HIS CE1 HE1 sing N N 185 HIS NE2 HE2 sing N N 186 HIS OXT HXT sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 ILE N CA sing N N 190 ILE N H sing N N 191 ILE N H2 sing N N 192 ILE CA C sing N N 193 ILE CA CB sing N N 194 ILE CA HA sing N N 195 ILE C O doub N N 196 ILE C OXT sing N N 197 ILE CB CG1 sing N N 198 ILE CB CG2 sing N N 199 ILE CB HB sing N N 200 ILE CG1 CD1 sing N N 201 ILE CG1 HG12 sing N N 202 ILE CG1 HG13 sing N N 203 ILE CG2 HG21 sing N N 204 ILE CG2 HG22 sing N N 205 ILE CG2 HG23 sing N N 206 ILE CD1 HD11 sing N N 207 ILE CD1 HD12 sing N N 208 ILE CD1 HD13 sing N N 209 ILE OXT HXT sing N N 210 LEU N CA sing N N 211 LEU N H sing N N 212 LEU N H2 sing N N 213 LEU CA C sing N N 214 LEU CA CB sing N N 215 LEU CA HA sing N N 216 LEU C O doub N N 217 LEU C OXT sing N N 218 LEU CB CG sing N N 219 LEU CB HB2 sing N N 220 LEU CB HB3 sing N N 221 LEU CG CD1 sing N N 222 LEU CG CD2 sing N N 223 LEU CG HG sing N N 224 LEU CD1 HD11 sing N N 225 LEU CD1 HD12 sing N N 226 LEU CD1 HD13 sing N N 227 LEU CD2 HD21 sing N N 228 LEU CD2 HD22 sing N N 229 LEU CD2 HD23 sing N N 230 LEU OXT HXT sing N N 231 LYS N CA sing N N 232 LYS N H sing N N 233 LYS N H2 sing N N 234 LYS CA C sing N N 235 LYS CA CB sing N N 236 LYS CA HA sing N N 237 LYS C O doub N N 238 LYS C OXT sing N N 239 LYS CB CG sing N N 240 LYS CB HB2 sing N N 241 LYS CB HB3 sing N N 242 LYS CG CD sing N N 243 LYS CG HG2 sing N N 244 LYS CG HG3 sing N N 245 LYS CD CE sing N N 246 LYS CD HD2 sing N N 247 LYS CD HD3 sing N N 248 LYS CE NZ sing N N 249 LYS CE HE2 sing N N 250 LYS CE HE3 sing N N 251 LYS NZ HZ1 sing N N 252 LYS NZ HZ2 sing N N 253 LYS NZ HZ3 sing N N 254 LYS OXT HXT sing N N 255 MET N CA sing N N 256 MET N H sing N N 257 MET N H2 sing N N 258 MET CA C sing N N 259 MET CA CB sing N N 260 MET CA HA sing N N 261 MET C O doub N N 262 MET C OXT sing N N 263 MET CB CG sing N N 264 MET CB HB2 sing N N 265 MET CB HB3 sing N N 266 MET CG SD sing N N 267 MET CG HG2 sing N N 268 MET CG HG3 sing N N 269 MET SD CE sing N N 270 MET CE HE1 sing N N 271 MET CE HE2 sing N N 272 MET CE HE3 sing N N 273 MET OXT HXT sing N N 274 PHE N CA sing N N 275 PHE N H sing N N 276 PHE N H2 sing N N 277 PHE CA C sing N N 278 PHE CA CB sing N N 279 PHE CA HA sing N N 280 PHE C O doub N N 281 PHE C OXT sing N N 282 PHE CB CG sing N N 283 PHE CB HB2 sing N N 284 PHE CB HB3 sing N N 285 PHE CG CD1 doub Y N 286 PHE CG CD2 sing Y N 287 PHE CD1 CE1 sing Y N 288 PHE CD1 HD1 sing N N 289 PHE CD2 CE2 doub Y N 290 PHE CD2 HD2 sing N N 291 PHE CE1 CZ doub Y N 292 PHE CE1 HE1 sing N N 293 PHE CE2 CZ sing Y N 294 PHE CE2 HE2 sing N N 295 PHE CZ HZ sing N N 296 PHE OXT HXT sing N N 297 PRO N CA sing N N 298 PRO N CD sing N N 299 PRO N H sing N N 300 PRO CA C sing N N 301 PRO CA CB sing N N 302 PRO CA HA sing N N 303 PRO C O doub N N 304 PRO C OXT sing N N 305 PRO CB CG sing N N 306 PRO CB HB2 sing N N 307 PRO CB HB3 sing N N 308 PRO CG CD sing N N 309 PRO CG HG2 sing N N 310 PRO CG HG3 sing N N 311 PRO CD HD2 sing N N 312 PRO CD HD3 sing N N 313 PRO OXT HXT sing N N 314 SER N CA sing N N 315 SER N H sing N N 316 SER N H2 sing N N 317 SER CA C sing N N 318 SER CA CB sing N N 319 SER CA HA sing N N 320 SER C O doub N N 321 SER C OXT sing N N 322 SER CB OG sing N N 323 SER CB HB2 sing N N 324 SER CB HB3 sing N N 325 SER OG HG sing N N 326 SER OXT HXT sing N N 327 THR N CA sing N N 328 THR N H sing N N 329 THR N H2 sing N N 330 THR CA C sing N N 331 THR CA CB sing N N 332 THR CA HA sing N N 333 THR C O doub N N 334 THR C OXT sing N N 335 THR CB OG1 sing N N 336 THR CB CG2 sing N N 337 THR CB HB sing N N 338 THR OG1 HG1 sing N N 339 THR CG2 HG21 sing N N 340 THR CG2 HG22 sing N N 341 THR CG2 HG23 sing N N 342 THR OXT HXT sing N N 343 TRP N CA sing N N 344 TRP N H sing N N 345 TRP N H2 sing N N 346 TRP CA C sing N N 347 TRP CA CB sing N N 348 TRP CA HA sing N N 349 TRP C O doub N N 350 TRP C OXT sing N N 351 TRP CB CG sing N N 352 TRP CB HB2 sing N N 353 TRP CB HB3 sing N N 354 TRP CG CD1 doub Y N 355 TRP CG CD2 sing Y N 356 TRP CD1 NE1 sing Y N 357 TRP CD1 HD1 sing N N 358 TRP CD2 CE2 doub Y N 359 TRP CD2 CE3 sing Y N 360 TRP NE1 CE2 sing Y N 361 TRP NE1 HE1 sing N N 362 TRP CE2 CZ2 sing Y N 363 TRP CE3 CZ3 doub Y N 364 TRP CE3 HE3 sing N N 365 TRP CZ2 CH2 doub Y N 366 TRP CZ2 HZ2 sing N N 367 TRP CZ3 CH2 sing Y N 368 TRP CZ3 HZ3 sing N N 369 TRP CH2 HH2 sing N N 370 TRP OXT HXT sing N N 371 TYR N CA sing N N 372 TYR N H sing N N 373 TYR N H2 sing N N 374 TYR CA C sing N N 375 TYR CA CB sing N N 376 TYR CA HA sing N N 377 TYR C O doub N N 378 TYR C OXT sing N N 379 TYR CB CG sing N N 380 TYR CB HB2 sing N N 381 TYR CB HB3 sing N N 382 TYR CG CD1 doub Y N 383 TYR CG CD2 sing Y N 384 TYR CD1 CE1 sing Y N 385 TYR CD1 HD1 sing N N 386 TYR CD2 CE2 doub Y N 387 TYR CD2 HD2 sing N N 388 TYR CE1 CZ doub Y N 389 TYR CE1 HE1 sing N N 390 TYR CE2 CZ sing Y N 391 TYR CE2 HE2 sing N N 392 TYR CZ OH sing N N 393 TYR OH HH sing N N 394 TYR OXT HXT sing N N 395 VAL N CA sing N N 396 VAL N H sing N N 397 VAL N H2 sing N N 398 VAL CA C sing N N 399 VAL CA CB sing N N 400 VAL CA HA sing N N 401 VAL C O doub N N 402 VAL C OXT sing N N 403 VAL CB CG1 sing N N 404 VAL CB CG2 sing N N 405 VAL CB HB sing N N 406 VAL CG1 HG11 sing N N 407 VAL CG1 HG12 sing N N 408 VAL CG1 HG13 sing N N 409 VAL CG2 HG21 sing N N 410 VAL CG2 HG22 sing N N 411 VAL CG2 HG23 sing N N 412 VAL OXT HXT sing N N 413 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Polyalanine Rab5c' # _atom_sites.entry_id 1YZK _atom_sites.fract_transf_matrix[1][1] 0.013523 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013523 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_