data_1YZL # _entry.id 1YZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YZL pdb_00001yzl 10.2210/pdb1yzl/pdb RCSB RCSB032110 ? ? WWPDB D_1000032110 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2024-02-14 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Experimental preparation' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' reflns_shell 2 5 'Structure model' exptl_crystal_grow 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_struct_conn_angle 7 6 'Structure model' struct_conn 8 6 'Structure model' struct_ref_seq_dif 9 6 'Structure model' struct_site 10 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_reflns_shell.percent_possible_all' 2 5 'Structure model' '_exptl_crystal_grow.temp' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.value' 18 6 'Structure model' '_struct_conn.pdbx_dist_value' 19 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 6 'Structure model' '_struct_ref_seq_dif.details' 32 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YZL _pdbx_database_status.recvd_initial_deposition_date 2005-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eathiraj, S.' 1 'Pan, X.' 2 'Ritacco, C.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural basis of family-wide Rab GTPase recognition by rabenosyn-5.' _citation.journal_abbrev Nature _citation.journal_volume 436 _citation.page_first 415 _citation.page_last 419 _citation.year 2005 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16034420 _citation.pdbx_database_id_DOI 10.1038/nature03798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eathiraj, S.' 1 ? primary 'Pan, X.' 2 ? primary 'Ritacco, C.' 3 ? primary 'Lambright, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein Rab-9A' 20221.590 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 4 water nat water 18.015 253 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rab-9, Sid 99' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAK DSTNVAAAFEEAVRRILAT ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAK DSTNVAAAFEEAVRRILAT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ALA n 1 7 GLY n 1 8 LYS n 1 9 SER n 1 10 SER n 1 11 LEU n 1 12 PHE n 1 13 LYS n 1 14 ILE n 1 15 ILE n 1 16 LEU n 1 17 LEU n 1 18 GLY n 1 19 ASP n 1 20 GLY n 1 21 GLY n 1 22 VAL n 1 23 GLY n 1 24 LYS n 1 25 SER n 1 26 SER n 1 27 LEU n 1 28 MET n 1 29 ASN n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 THR n 1 34 ASN n 1 35 LYS n 1 36 PHE n 1 37 ASP n 1 38 SER n 1 39 GLN n 1 40 LEU n 1 41 PHE n 1 42 HIS n 1 43 THR n 1 44 ILE n 1 45 GLY n 1 46 VAL n 1 47 GLU n 1 48 PHE n 1 49 LEU n 1 50 ASN n 1 51 LYS n 1 52 ASP n 1 53 LEU n 1 54 GLU n 1 55 VAL n 1 56 ASP n 1 57 GLY n 1 58 HIS n 1 59 PHE n 1 60 VAL n 1 61 THR n 1 62 MET n 1 63 GLN n 1 64 ILE n 1 65 TRP n 1 66 ASP n 1 67 THR n 1 68 ALA n 1 69 GLY n 1 70 GLN n 1 71 GLU n 1 72 ARG n 1 73 PHE n 1 74 ARG n 1 75 SER n 1 76 LEU n 1 77 ARG n 1 78 THR n 1 79 PRO n 1 80 PHE n 1 81 TYR n 1 82 ARG n 1 83 GLY n 1 84 SER n 1 85 ASP n 1 86 CYS n 1 87 CYS n 1 88 LEU n 1 89 LEU n 1 90 THR n 1 91 PHE n 1 92 SER n 1 93 VAL n 1 94 ASP n 1 95 ASP n 1 96 SER n 1 97 GLN n 1 98 SER n 1 99 PHE n 1 100 GLN n 1 101 ASN n 1 102 LEU n 1 103 SER n 1 104 ASN n 1 105 TRP n 1 106 LYS n 1 107 LYS n 1 108 GLU n 1 109 PHE n 1 110 ILE n 1 111 TYR n 1 112 TYR n 1 113 ALA n 1 114 ASP n 1 115 VAL n 1 116 LYS n 1 117 GLU n 1 118 PRO n 1 119 GLU n 1 120 SER n 1 121 PHE n 1 122 PRO n 1 123 PHE n 1 124 VAL n 1 125 ILE n 1 126 LEU n 1 127 GLY n 1 128 ASN n 1 129 LYS n 1 130 THR n 1 131 ASP n 1 132 ILE n 1 133 LYS n 1 134 GLU n 1 135 ARG n 1 136 GLN n 1 137 VAL n 1 138 SER n 1 139 THR n 1 140 GLU n 1 141 GLU n 1 142 ALA n 1 143 GLN n 1 144 ALA n 1 145 TRP n 1 146 CYS n 1 147 LYS n 1 148 ASP n 1 149 ASN n 1 150 GLY n 1 151 ASP n 1 152 TYR n 1 153 PRO n 1 154 TYR n 1 155 PHE n 1 156 GLU n 1 157 THR n 1 158 SER n 1 159 ALA n 1 160 LYS n 1 161 ASP n 1 162 SER n 1 163 THR n 1 164 ASN n 1 165 VAL n 1 166 ALA n 1 167 ALA n 1 168 ALA n 1 169 PHE n 1 170 GLU n 1 171 GLU n 1 172 ALA n 1 173 VAL n 1 174 ARG n 1 175 ARG n 1 176 ILE n 1 177 LEU n 1 178 ALA n 1 179 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Rab9a, Rab9, Sid99' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon Plus-RIL Cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'GST fustion vector, pGEX' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 LEU 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 SER 5 1 ? ? ? A . n A 1 6 ALA 6 2 ? ? ? A . n A 1 7 GLY 7 3 ? ? ? A . n A 1 8 LYS 8 4 4 LYS LYS A . n A 1 9 SER 9 5 5 SER SER A . n A 1 10 SER 10 6 6 SER SER A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 PHE 12 8 8 PHE PHE A . n A 1 13 LYS 13 9 9 LYS LYS A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 ILE 15 11 11 ILE ILE A . n A 1 16 LEU 16 12 12 LEU LEU A . n A 1 17 LEU 17 13 13 LEU LEU A . n A 1 18 GLY 18 14 14 GLY GLY A . n A 1 19 ASP 19 15 15 ASP ASP A . n A 1 20 GLY 20 16 16 GLY GLY A . n A 1 21 GLY 21 17 17 GLY GLY A . n A 1 22 VAL 22 18 18 VAL VAL A . n A 1 23 GLY 23 19 19 GLY GLY A . n A 1 24 LYS 24 20 20 LYS LYS A . n A 1 25 SER 25 21 21 SER SER A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 LEU 27 23 23 LEU LEU A . n A 1 28 MET 28 24 24 MET MET A . n A 1 29 ASN 29 25 25 ASN ASN A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 VAL 32 28 28 VAL VAL A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 LYS 35 31 31 LYS LYS A . n A 1 36 PHE 36 32 32 PHE PHE A . n A 1 37 ASP 37 33 33 ASP ASP A . n A 1 38 SER 38 34 34 SER SER A . n A 1 39 GLN 39 35 35 GLN GLN A . n A 1 40 LEU 40 36 36 LEU LEU A . n A 1 41 PHE 41 37 37 PHE PHE A . n A 1 42 HIS 42 38 38 HIS HIS A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 ILE 44 40 40 ILE ILE A . n A 1 45 GLY 45 41 41 GLY GLY A . n A 1 46 VAL 46 42 42 VAL VAL A . n A 1 47 GLU 47 43 43 GLU GLU A . n A 1 48 PHE 48 44 44 PHE PHE A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 ASN 50 46 46 ASN ASN A . n A 1 51 LYS 51 47 47 LYS LYS A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 LEU 53 49 49 LEU LEU A . n A 1 54 GLU 54 50 50 GLU GLU A . n A 1 55 VAL 55 51 51 VAL VAL A . n A 1 56 ASP 56 52 52 ASP ASP A . n A 1 57 GLY 57 53 53 GLY GLY A . n A 1 58 HIS 58 54 54 HIS HIS A . n A 1 59 PHE 59 55 55 PHE PHE A . n A 1 60 VAL 60 56 56 VAL VAL A . n A 1 61 THR 61 57 57 THR THR A . n A 1 62 MET 62 58 58 MET MET A . n A 1 63 GLN 63 59 59 GLN GLN A . n A 1 64 ILE 64 60 60 ILE ILE A . n A 1 65 TRP 65 61 61 TRP TRP A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 THR 67 63 63 THR THR A . n A 1 68 ALA 68 64 64 ALA ALA A . n A 1 69 GLY 69 65 65 GLY GLY A . n A 1 70 GLN 70 66 66 GLN GLN A . n A 1 71 GLU 71 67 67 GLU GLU A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 PHE 73 69 69 PHE PHE A . n A 1 74 ARG 74 70 70 ARG ARG A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 LEU 76 72 72 LEU LEU A . n A 1 77 ARG 77 73 73 ARG ARG A . n A 1 78 THR 78 74 74 THR THR A . n A 1 79 PRO 79 75 75 PRO PRO A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 TYR 81 77 77 TYR TYR A . n A 1 82 ARG 82 78 78 ARG ARG A . n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 SER 84 80 80 SER SER A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 CYS 86 82 82 CYS CYS A . n A 1 87 CYS 87 83 83 CYS CYS A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 LEU 89 85 85 LEU LEU A . n A 1 90 THR 90 86 86 THR THR A . n A 1 91 PHE 91 87 87 PHE PHE A . n A 1 92 SER 92 88 88 SER SER A . n A 1 93 VAL 93 89 89 VAL VAL A . n A 1 94 ASP 94 90 90 ASP ASP A . n A 1 95 ASP 95 91 91 ASP ASP A . n A 1 96 SER 96 92 92 SER SER A . n A 1 97 GLN 97 93 93 GLN GLN A . n A 1 98 SER 98 94 94 SER SER A . n A 1 99 PHE 99 95 95 PHE PHE A . n A 1 100 GLN 100 96 96 GLN GLN A . n A 1 101 ASN 101 97 97 ASN ASN A . n A 1 102 LEU 102 98 98 LEU LEU A . n A 1 103 SER 103 99 99 SER SER A . n A 1 104 ASN 104 100 100 ASN ASN A . n A 1 105 TRP 105 101 101 TRP TRP A . n A 1 106 LYS 106 102 102 LYS LYS A . n A 1 107 LYS 107 103 103 LYS LYS A . n A 1 108 GLU 108 104 104 GLU GLU A . n A 1 109 PHE 109 105 105 PHE PHE A . n A 1 110 ILE 110 106 106 ILE ILE A . n A 1 111 TYR 111 107 107 TYR TYR A . n A 1 112 TYR 112 108 108 TYR TYR A . n A 1 113 ALA 113 109 109 ALA ALA A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 VAL 115 111 111 VAL VAL A . n A 1 116 LYS 116 112 112 LYS ALA A . n A 1 117 GLU 117 113 113 GLU ALA A . n A 1 118 PRO 118 114 114 PRO ALA A . n A 1 119 GLU 119 115 115 GLU ALA A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 PHE 121 117 117 PHE PHE A . n A 1 122 PRO 122 118 118 PRO PRO A . n A 1 123 PHE 123 119 119 PHE PHE A . n A 1 124 VAL 124 120 120 VAL VAL A . n A 1 125 ILE 125 121 121 ILE ILE A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 GLY 127 123 123 GLY GLY A . n A 1 128 ASN 128 124 124 ASN ASN A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 THR 130 126 126 THR THR A . n A 1 131 ASP 131 127 127 ASP ASP A . n A 1 132 ILE 132 128 128 ILE ILE A . n A 1 133 LYS 133 129 129 LYS LYS A . n A 1 134 GLU 134 130 130 GLU ALA A . n A 1 135 ARG 135 131 131 ARG ARG A . n A 1 136 GLN 136 132 132 GLN GLN A . n A 1 137 VAL 137 133 133 VAL VAL A . n A 1 138 SER 138 134 134 SER SER A . n A 1 139 THR 139 135 135 THR THR A . n A 1 140 GLU 140 136 136 GLU GLU A . n A 1 141 GLU 141 137 137 GLU GLU A . n A 1 142 ALA 142 138 138 ALA ALA A . n A 1 143 GLN 143 139 139 GLN GLN A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 TRP 145 141 141 TRP TRP A . n A 1 146 CYS 146 142 142 CYS CYS A . n A 1 147 LYS 147 143 143 LYS LYS A . n A 1 148 ASP 148 144 144 ASP ASP A . n A 1 149 ASN 149 145 145 ASN ASN A . n A 1 150 GLY 150 146 146 GLY GLY A . n A 1 151 ASP 151 147 147 ASP ASP A . n A 1 152 TYR 152 148 148 TYR TYR A . n A 1 153 PRO 153 149 149 PRO PRO A . n A 1 154 TYR 154 150 150 TYR TYR A . n A 1 155 PHE 155 151 151 PHE PHE A . n A 1 156 GLU 156 152 152 GLU GLU A . n A 1 157 THR 157 153 153 THR THR A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 ALA 159 155 155 ALA ALA A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 ASP 161 157 157 ASP ASP A . n A 1 162 SER 162 158 158 SER SER A . n A 1 163 THR 163 159 159 THR THR A . n A 1 164 ASN 164 160 160 ASN ASN A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 ALA 166 162 162 ALA ALA A . n A 1 167 ALA 167 163 163 ALA ALA A . n A 1 168 ALA 168 164 164 ALA ALA A . n A 1 169 PHE 169 165 165 PHE PHE A . n A 1 170 GLU 170 166 166 GLU GLU A . n A 1 171 GLU 171 167 167 GLU GLU A . n A 1 172 ALA 172 168 168 ALA ALA A . n A 1 173 VAL 173 169 169 VAL VAL A . n A 1 174 ARG 174 170 170 ARG ARG A . n A 1 175 ARG 175 171 171 ARG ARG A . n A 1 176 ILE 176 172 172 ILE ILE A . n A 1 177 LEU 177 173 173 LEU LEU A . n A 1 178 ALA 178 174 174 ALA ALA A . n A 1 179 THR 179 175 175 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 401 201 MG MG A . C 3 GNP 1 400 200 GNP GNP A . D 4 HOH 1 402 1 HOH HOH A . D 4 HOH 2 403 2 HOH HOH A . D 4 HOH 3 404 3 HOH HOH A . D 4 HOH 4 405 4 HOH HOH A . D 4 HOH 5 406 5 HOH HOH A . D 4 HOH 6 407 6 HOH HOH A . D 4 HOH 7 408 7 HOH HOH A . D 4 HOH 8 409 8 HOH HOH A . D 4 HOH 9 410 9 HOH HOH A . D 4 HOH 10 411 10 HOH HOH A . D 4 HOH 11 412 13 HOH HOH A . D 4 HOH 12 413 14 HOH HOH A . D 4 HOH 13 414 15 HOH HOH A . D 4 HOH 14 415 16 HOH HOH A . D 4 HOH 15 416 17 HOH HOH A . D 4 HOH 16 417 19 HOH HOH A . D 4 HOH 17 418 20 HOH HOH A . D 4 HOH 18 419 21 HOH HOH A . D 4 HOH 19 420 22 HOH HOH A . D 4 HOH 20 421 23 HOH HOH A . D 4 HOH 21 422 24 HOH HOH A . D 4 HOH 22 423 25 HOH HOH A . D 4 HOH 23 424 27 HOH HOH A . D 4 HOH 24 425 28 HOH HOH A . D 4 HOH 25 426 30 HOH HOH A . D 4 HOH 26 427 31 HOH HOH A . D 4 HOH 27 428 32 HOH HOH A . D 4 HOH 28 429 33 HOH HOH A . D 4 HOH 29 430 34 HOH HOH A . D 4 HOH 30 431 35 HOH HOH A . D 4 HOH 31 432 36 HOH HOH A . D 4 HOH 32 433 38 HOH HOH A . D 4 HOH 33 434 39 HOH HOH A . D 4 HOH 34 435 40 HOH HOH A . D 4 HOH 35 436 41 HOH HOH A . D 4 HOH 36 437 42 HOH HOH A . D 4 HOH 37 438 43 HOH HOH A . D 4 HOH 38 439 44 HOH HOH A . D 4 HOH 39 440 45 HOH HOH A . D 4 HOH 40 441 46 HOH HOH A . D 4 HOH 41 442 47 HOH HOH A . D 4 HOH 42 443 48 HOH HOH A . D 4 HOH 43 444 49 HOH HOH A . D 4 HOH 44 445 50 HOH HOH A . D 4 HOH 45 446 51 HOH HOH A . D 4 HOH 46 447 52 HOH HOH A . D 4 HOH 47 448 53 HOH HOH A . D 4 HOH 48 449 54 HOH HOH A . D 4 HOH 49 450 55 HOH HOH A . D 4 HOH 50 451 56 HOH HOH A . D 4 HOH 51 452 58 HOH HOH A . D 4 HOH 52 453 59 HOH HOH A . D 4 HOH 53 454 60 HOH HOH A . D 4 HOH 54 455 61 HOH HOH A . D 4 HOH 55 456 62 HOH HOH A . D 4 HOH 56 457 63 HOH HOH A . D 4 HOH 57 458 64 HOH HOH A . D 4 HOH 58 459 65 HOH HOH A . D 4 HOH 59 460 66 HOH HOH A . D 4 HOH 60 461 67 HOH HOH A . D 4 HOH 61 462 68 HOH HOH A . D 4 HOH 62 463 70 HOH HOH A . D 4 HOH 63 464 71 HOH HOH A . D 4 HOH 64 465 72 HOH HOH A . D 4 HOH 65 466 73 HOH HOH A . D 4 HOH 66 467 74 HOH HOH A . D 4 HOH 67 468 75 HOH HOH A . D 4 HOH 68 469 76 HOH HOH A . D 4 HOH 69 470 77 HOH HOH A . D 4 HOH 70 471 78 HOH HOH A . D 4 HOH 71 472 79 HOH HOH A . D 4 HOH 72 473 80 HOH HOH A . D 4 HOH 73 474 81 HOH HOH A . D 4 HOH 74 475 82 HOH HOH A . D 4 HOH 75 476 84 HOH HOH A . D 4 HOH 76 477 86 HOH HOH A . D 4 HOH 77 478 87 HOH HOH A . D 4 HOH 78 479 88 HOH HOH A . D 4 HOH 79 480 89 HOH HOH A . D 4 HOH 80 481 90 HOH HOH A . D 4 HOH 81 482 91 HOH HOH A . D 4 HOH 82 483 92 HOH HOH A . D 4 HOH 83 484 94 HOH HOH A . D 4 HOH 84 485 95 HOH HOH A . D 4 HOH 85 486 96 HOH HOH A . D 4 HOH 86 487 98 HOH HOH A . D 4 HOH 87 488 99 HOH HOH A . D 4 HOH 88 489 100 HOH HOH A . D 4 HOH 89 490 101 HOH HOH A . D 4 HOH 90 491 103 HOH HOH A . D 4 HOH 91 492 104 HOH HOH A . D 4 HOH 92 493 105 HOH HOH A . D 4 HOH 93 494 106 HOH HOH A . D 4 HOH 94 495 107 HOH HOH A . D 4 HOH 95 496 108 HOH HOH A . D 4 HOH 96 497 109 HOH HOH A . D 4 HOH 97 498 110 HOH HOH A . D 4 HOH 98 499 112 HOH HOH A . D 4 HOH 99 500 113 HOH HOH A . D 4 HOH 100 501 114 HOH HOH A . D 4 HOH 101 502 118 HOH HOH A . D 4 HOH 102 503 119 HOH HOH A . D 4 HOH 103 504 121 HOH HOH A . D 4 HOH 104 505 122 HOH HOH A . D 4 HOH 105 506 123 HOH HOH A . D 4 HOH 106 507 124 HOH HOH A . D 4 HOH 107 508 125 HOH HOH A . D 4 HOH 108 509 126 HOH HOH A . D 4 HOH 109 510 128 HOH HOH A . D 4 HOH 110 511 129 HOH HOH A . D 4 HOH 111 512 131 HOH HOH A . D 4 HOH 112 513 135 HOH HOH A . D 4 HOH 113 514 137 HOH HOH A . D 4 HOH 114 515 140 HOH HOH A . D 4 HOH 115 516 141 HOH HOH A . D 4 HOH 116 517 142 HOH HOH A . D 4 HOH 117 518 143 HOH HOH A . D 4 HOH 118 519 144 HOH HOH A . D 4 HOH 119 520 145 HOH HOH A . D 4 HOH 120 521 146 HOH HOH A . D 4 HOH 121 522 147 HOH HOH A . D 4 HOH 122 523 149 HOH HOH A . D 4 HOH 123 524 150 HOH HOH A . D 4 HOH 124 525 151 HOH HOH A . D 4 HOH 125 526 152 HOH HOH A . D 4 HOH 126 527 156 HOH HOH A . D 4 HOH 127 528 157 HOH HOH A . D 4 HOH 128 529 158 HOH HOH A . D 4 HOH 129 530 160 HOH HOH A . D 4 HOH 130 531 161 HOH HOH A . D 4 HOH 131 532 163 HOH HOH A . D 4 HOH 132 533 164 HOH HOH A . D 4 HOH 133 534 165 HOH HOH A . D 4 HOH 134 535 166 HOH HOH A . D 4 HOH 135 536 167 HOH HOH A . D 4 HOH 136 537 168 HOH HOH A . D 4 HOH 137 538 172 HOH HOH A . D 4 HOH 138 539 173 HOH HOH A . D 4 HOH 139 540 174 HOH HOH A . D 4 HOH 140 541 175 HOH HOH A . D 4 HOH 141 542 176 HOH HOH A . D 4 HOH 142 543 178 HOH HOH A . D 4 HOH 143 544 179 HOH HOH A . D 4 HOH 144 545 181 HOH HOH A . D 4 HOH 145 546 182 HOH HOH A . D 4 HOH 146 547 184 HOH HOH A . D 4 HOH 147 548 186 HOH HOH A . D 4 HOH 148 549 187 HOH HOH A . D 4 HOH 149 550 188 HOH HOH A . D 4 HOH 150 551 189 HOH HOH A . D 4 HOH 151 552 190 HOH HOH A . D 4 HOH 152 553 191 HOH HOH A . D 4 HOH 153 554 192 HOH HOH A . D 4 HOH 154 555 193 HOH HOH A . D 4 HOH 155 556 194 HOH HOH A . D 4 HOH 156 557 197 HOH HOH A . D 4 HOH 157 558 198 HOH HOH A . D 4 HOH 158 559 199 HOH HOH A . D 4 HOH 159 560 201 HOH HOH A . D 4 HOH 160 561 202 HOH HOH A . D 4 HOH 161 562 203 HOH HOH A . D 4 HOH 162 563 204 HOH HOH A . D 4 HOH 163 564 205 HOH HOH A . D 4 HOH 164 565 206 HOH HOH A . D 4 HOH 165 566 207 HOH HOH A . D 4 HOH 166 567 208 HOH HOH A . D 4 HOH 167 568 209 HOH HOH A . D 4 HOH 168 569 210 HOH HOH A . D 4 HOH 169 570 211 HOH HOH A . D 4 HOH 170 571 214 HOH HOH A . D 4 HOH 171 572 215 HOH HOH A . D 4 HOH 172 573 216 HOH HOH A . D 4 HOH 173 574 217 HOH HOH A . D 4 HOH 174 575 218 HOH HOH A . D 4 HOH 175 576 219 HOH HOH A . D 4 HOH 176 577 220 HOH HOH A . D 4 HOH 177 578 221 HOH HOH A . D 4 HOH 178 579 223 HOH HOH A . D 4 HOH 179 580 226 HOH HOH A . D 4 HOH 180 581 228 HOH HOH A . D 4 HOH 181 582 230 HOH HOH A . D 4 HOH 182 583 231 HOH HOH A . D 4 HOH 183 584 233 HOH HOH A . D 4 HOH 184 585 234 HOH HOH A . D 4 HOH 185 586 237 HOH HOH A . D 4 HOH 186 587 238 HOH HOH A . D 4 HOH 187 588 239 HOH HOH A . D 4 HOH 188 589 240 HOH HOH A . D 4 HOH 189 590 241 HOH HOH A . D 4 HOH 190 591 242 HOH HOH A . D 4 HOH 191 592 243 HOH HOH A . D 4 HOH 192 593 245 HOH HOH A . D 4 HOH 193 594 247 HOH HOH A . D 4 HOH 194 595 253 HOH HOH A . D 4 HOH 195 596 256 HOH HOH A . D 4 HOH 196 597 259 HOH HOH A . D 4 HOH 197 598 262 HOH HOH A . D 4 HOH 198 599 263 HOH HOH A . D 4 HOH 199 600 264 HOH HOH A . D 4 HOH 200 601 266 HOH HOH A . D 4 HOH 201 602 267 HOH HOH A . D 4 HOH 202 603 268 HOH HOH A . D 4 HOH 203 604 271 HOH HOH A . D 4 HOH 204 605 272 HOH HOH A . D 4 HOH 205 606 273 HOH HOH A . D 4 HOH 206 607 274 HOH HOH A . D 4 HOH 207 608 276 HOH HOH A . D 4 HOH 208 609 277 HOH HOH A . D 4 HOH 209 610 278 HOH HOH A . D 4 HOH 210 611 280 HOH HOH A . D 4 HOH 211 612 281 HOH HOH A . D 4 HOH 212 613 282 HOH HOH A . D 4 HOH 213 614 283 HOH HOH A . D 4 HOH 214 615 284 HOH HOH A . D 4 HOH 215 616 288 HOH HOH A . D 4 HOH 216 617 289 HOH HOH A . D 4 HOH 217 618 290 HOH HOH A . D 4 HOH 218 619 292 HOH HOH A . D 4 HOH 219 620 295 HOH HOH A . D 4 HOH 220 621 296 HOH HOH A . D 4 HOH 221 622 297 HOH HOH A . D 4 HOH 222 623 298 HOH HOH A . D 4 HOH 223 624 300 HOH HOH A . D 4 HOH 224 625 301 HOH HOH A . D 4 HOH 225 626 303 HOH HOH A . D 4 HOH 226 627 304 HOH HOH A . D 4 HOH 227 628 306 HOH HOH A . D 4 HOH 228 629 308 HOH HOH A . D 4 HOH 229 630 309 HOH HOH A . D 4 HOH 230 631 311 HOH HOH A . D 4 HOH 231 632 314 HOH HOH A . D 4 HOH 232 633 315 HOH HOH A . D 4 HOH 233 634 318 HOH HOH A . D 4 HOH 234 635 319 HOH HOH A . D 4 HOH 235 636 328 HOH HOH A . D 4 HOH 236 637 332 HOH HOH A . D 4 HOH 237 638 333 HOH HOH A . D 4 HOH 238 639 336 HOH HOH A . D 4 HOH 239 640 338 HOH HOH A . D 4 HOH 240 641 339 HOH HOH A . D 4 HOH 241 642 344 HOH HOH A . D 4 HOH 242 643 348 HOH HOH A . D 4 HOH 243 644 350 HOH HOH A . D 4 HOH 244 645 352 HOH HOH A . D 4 HOH 245 646 353 HOH HOH A . D 4 HOH 246 647 354 HOH HOH A . D 4 HOH 247 648 355 HOH HOH A . D 4 HOH 248 649 356 HOH HOH A . D 4 HOH 249 650 357 HOH HOH A . D 4 HOH 250 651 358 HOH HOH A . D 4 HOH 251 652 359 HOH HOH A . D 4 HOH 252 653 363 HOH HOH A . D 4 HOH 253 654 364 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 112 ? CG ? A LYS 116 CG 2 1 Y 1 A LYS 112 ? CD ? A LYS 116 CD 3 1 Y 1 A LYS 112 ? CE ? A LYS 116 CE 4 1 Y 1 A LYS 112 ? NZ ? A LYS 116 NZ 5 1 Y 1 A GLU 113 ? CG ? A GLU 117 CG 6 1 Y 1 A GLU 113 ? CD ? A GLU 117 CD 7 1 Y 1 A GLU 113 ? OE1 ? A GLU 117 OE1 8 1 Y 1 A GLU 113 ? OE2 ? A GLU 117 OE2 9 1 Y 1 A PRO 114 ? CG ? A PRO 118 CG 10 1 Y 1 A PRO 114 ? CD ? A PRO 118 CD 11 1 Y 1 A GLU 115 ? CG ? A GLU 119 CG 12 1 Y 1 A GLU 115 ? CD ? A GLU 119 CD 13 1 Y 1 A GLU 115 ? OE1 ? A GLU 119 OE1 14 1 Y 1 A GLU 115 ? OE2 ? A GLU 119 OE2 15 1 Y 1 A GLU 130 ? CG ? A GLU 134 CG 16 1 Y 1 A GLU 130 ? CD ? A GLU 134 CD 17 1 Y 1 A GLU 130 ? OE1 ? A GLU 134 OE1 18 1 Y 1 A GLU 130 ? OE2 ? A GLU 134 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1YZL _cell.length_a 68.325 _cell.length_b 68.325 _cell.length_c 83.229 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YZL _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YZL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '20% PEG 6000, 200mM Magnesium Chloride, 50mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 4K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2003-08-21 _diffrn_detector.details 'osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YZL _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 19409 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 26.2 _reflns.B_iso_Wilson_estimate 32.8 _reflns.pdbx_redundancy 7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.394 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_redundancy 7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 19418 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YZL _refine.ls_number_reflns_obs 17308 _refine.ls_number_reflns_all 19418 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 4.80 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 99.62 _refine.ls_R_factor_obs 0.19327 _refine.ls_R_factor_all 0.215 _refine.ls_R_factor_R_work 0.19179 _refine.ls_R_factor_R_free 0.22084 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 925 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 21.020 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.12 _refine.aniso_B[3][3] -0.18 _refine.aniso_B[1][2] 0.06 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Polyalanine Rab4 GTPase' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.143 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 2.596 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1369 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 4.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1433 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1233 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.158 1.959 ? 1944 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.810 3.000 ? 2868 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.804 5.000 ? 171 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.622 24.143 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.797 15.000 ? 234 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.894 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1588 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 313 'X-RAY DIFFRACTION' ? r_nbd_refined 0.214 0.200 ? 285 'X-RAY DIFFRACTION' ? r_nbd_other 0.185 0.200 ? 1212 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.182 0.200 ? 713 'X-RAY DIFFRACTION' ? r_nbtor_other 0.079 0.200 ? 742 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.154 0.200 ? 241 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.119 0.200 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.027 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.104 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.160 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.185 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.884 1.500 ? 1108 'X-RAY DIFFRACTION' ? r_mcbond_other 0.103 1.500 ? 353 'X-RAY DIFFRACTION' ? r_mcangle_it 0.958 2.000 ? 1367 'X-RAY DIFFRACTION' ? r_scbond_it 1.344 3.000 ? 715 'X-RAY DIFFRACTION' ? r_scangle_it 1.914 4.500 ? 577 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.854 _refine_ls_shell.d_res_low 1.895 _refine_ls_shell.number_reflns_R_work 1131 _refine_ls_shell.R_factor_R_work 0.21 _refine_ls_shell.percent_reflns_obs 98.17 _refine_ls_shell.R_factor_R_free 0.25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YZL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YZL _struct.title 'GppNHp-Bound Rab9 GTPase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YZL _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Rab GTPase, Rab9, vesicular trafficking, protein transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB9A_MOUSE _struct_ref.pdbx_db_accession Q9R0M6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNV AAAFEEAVRRILAT ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YZL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9R0M6 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YZL GLY A 1 ? UNP Q9R0M6 ? ? 'cloning artifact' -3 1 1 1YZL PRO A 2 ? UNP Q9R0M6 ? ? 'cloning artifact' -2 2 1 1YZL LEU A 3 ? UNP Q9R0M6 ? ? 'cloning artifact' -1 3 1 1YZL GLY A 4 ? UNP Q9R0M6 ? ? 'cloning artifact' 0 4 1 1YZL SER A 5 ? UNP Q9R0M6 ? ? 'cloning artifact' 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 23 ? ASN A 34 ? GLY A 19 ASN A 30 1 ? 12 HELX_P HELX_P2 2 GLN A 70 ? ARG A 72 ? GLN A 66 ARG A 68 5 ? 3 HELX_P HELX_P3 3 PHE A 73 ? THR A 78 ? PHE A 69 THR A 74 1 ? 6 HELX_P HELX_P4 4 PRO A 79 ? TYR A 81 ? PRO A 75 TYR A 77 5 ? 3 HELX_P HELX_P5 5 ASP A 95 ? ASN A 101 ? ASP A 91 ASN A 97 1 ? 7 HELX_P HELX_P6 6 ASN A 101 ? ASP A 114 ? ASN A 97 ASP A 110 1 ? 14 HELX_P HELX_P7 7 GLU A 117 ? PHE A 121 ? GLU A 113 PHE A 117 5 ? 5 HELX_P HELX_P8 8 SER A 138 ? ASN A 149 ? SER A 134 ASN A 145 1 ? 12 HELX_P HELX_P9 9 ASN A 164 ? ALA A 178 ? ASN A 160 ALA A 174 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 25 OG ? ? ? 1_555 B MG . MG ? ? A SER 21 A MG 401 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc2 metalc ? ? A THR 43 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 39 A MG 401 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc3 metalc ? ? C GNP . O2G ? ? ? 1_555 B MG . MG ? ? A GNP 400 A MG 401 1_555 ? ? ? ? ? ? ? 1.963 ? ? metalc4 metalc ? ? C GNP . O2B ? ? ? 1_555 B MG . MG ? ? A GNP 400 A MG 401 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 401 A HOH 419 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 401 A HOH 426 1_555 ? ? ? ? ? ? ? 2.099 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 25 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OG1 ? A THR 43 ? A THR 39 ? 1_555 87.2 ? 2 OG ? A SER 25 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O2G ? C GNP . ? A GNP 400 ? 1_555 172.3 ? 3 OG1 ? A THR 43 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O2G ? C GNP . ? A GNP 400 ? 1_555 87.1 ? 4 OG ? A SER 25 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O2B ? C GNP . ? A GNP 400 ? 1_555 90.7 ? 5 OG1 ? A THR 43 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O2B ? C GNP . ? A GNP 400 ? 1_555 177.5 ? 6 O2G ? C GNP . ? A GNP 400 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O2B ? C GNP . ? A GNP 400 ? 1_555 94.8 ? 7 OG ? A SER 25 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 419 ? 1_555 86.9 ? 8 OG1 ? A THR 43 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 419 ? 1_555 91.9 ? 9 O2G ? C GNP . ? A GNP 400 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 419 ? 1_555 88.1 ? 10 O2B ? C GNP . ? A GNP 400 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 419 ? 1_555 86.7 ? 11 OG ? A SER 25 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 426 ? 1_555 90.1 ? 12 OG1 ? A THR 43 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 426 ? 1_555 87.2 ? 13 O2G ? C GNP . ? A GNP 400 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 426 ? 1_555 94.9 ? 14 O2B ? C GNP . ? A GNP 400 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 426 ? 1_555 94.1 ? 15 O ? D HOH . ? A HOH 419 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 426 ? 1_555 176.9 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 47 ? GLU A 54 ? GLU A 43 GLU A 50 A 2 PHE A 59 ? ASP A 66 ? PHE A 55 ASP A 62 A 3 LEU A 11 ? LEU A 17 ? LEU A 7 LEU A 13 A 4 CYS A 86 ? SER A 92 ? CYS A 82 SER A 88 A 5 PHE A 123 ? ASN A 128 ? PHE A 119 ASN A 124 A 6 TYR A 154 ? GLU A 156 ? TYR A 150 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 47 ? N GLU A 43 O ASP A 66 ? O ASP A 62 A 2 3 O TRP A 65 ? O TRP A 61 N ILE A 14 ? N ILE A 10 A 3 4 N LEU A 17 ? N LEU A 13 O THR A 90 ? O THR A 86 A 4 5 N PHE A 91 ? N PHE A 87 O ASN A 128 ? O ASN A 124 A 5 6 N GLY A 127 ? N GLY A 123 O PHE A 155 ? O PHE A 151 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 401 ? 5 'BINDING SITE FOR RESIDUE MG A 401' AC2 Software A GNP 400 ? 27 'BINDING SITE FOR RESIDUE GNP A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 25 ? SER A 21 . ? 1_555 ? 2 AC1 5 THR A 43 ? THR A 39 . ? 1_555 ? 3 AC1 5 GNP C . ? GNP A 400 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 419 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 426 . ? 1_555 ? 6 AC2 27 GLY A 20 ? GLY A 16 . ? 1_555 ? 7 AC2 27 GLY A 21 ? GLY A 17 . ? 1_555 ? 8 AC2 27 VAL A 22 ? VAL A 18 . ? 1_555 ? 9 AC2 27 GLY A 23 ? GLY A 19 . ? 1_555 ? 10 AC2 27 LYS A 24 ? LYS A 20 . ? 1_555 ? 11 AC2 27 SER A 25 ? SER A 21 . ? 1_555 ? 12 AC2 27 SER A 26 ? SER A 22 . ? 1_555 ? 13 AC2 27 PHE A 36 ? PHE A 32 . ? 1_555 ? 14 AC2 27 ASP A 37 ? ASP A 33 . ? 1_555 ? 15 AC2 27 SER A 38 ? SER A 34 . ? 1_555 ? 16 AC2 27 LEU A 40 ? LEU A 36 . ? 1_555 ? 17 AC2 27 HIS A 42 ? HIS A 38 . ? 1_555 ? 18 AC2 27 THR A 43 ? THR A 39 . ? 1_555 ? 19 AC2 27 GLY A 69 ? GLY A 65 . ? 1_555 ? 20 AC2 27 ASN A 128 ? ASN A 124 . ? 1_555 ? 21 AC2 27 LYS A 129 ? LYS A 125 . ? 1_555 ? 22 AC2 27 ASP A 131 ? ASP A 127 . ? 1_555 ? 23 AC2 27 SER A 158 ? SER A 154 . ? 1_555 ? 24 AC2 27 ALA A 159 ? ALA A 155 . ? 1_555 ? 25 AC2 27 LYS A 160 ? LYS A 156 . ? 1_555 ? 26 AC2 27 MG B . ? MG A 401 . ? 1_555 ? 27 AC2 27 HOH D . ? HOH A 409 . ? 1_555 ? 28 AC2 27 HOH D . ? HOH A 419 . ? 1_555 ? 29 AC2 27 HOH D . ? HOH A 426 . ? 1_555 ? 30 AC2 27 HOH D . ? HOH A 431 . ? 1_555 ? 31 AC2 27 HOH D . ? HOH A 497 . ? 1_555 ? 32 AC2 27 HOH D . ? HOH A 508 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 40 ? ? -107.99 -87.75 2 1 LEU A 49 ? ? -170.77 -176.03 3 1 VAL A 51 ? ? -107.21 -62.37 4 1 LYS A 125 ? ? 71.47 30.40 5 1 SER A 158 ? ? 82.50 -9.11 6 1 ASN A 160 ? ? 59.60 13.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A LEU -1 ? A LEU 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A SER 1 ? A SER 5 6 1 Y 1 A ALA 2 ? A ALA 6 7 1 Y 1 A GLY 3 ? A GLY 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GNP PG P N N 137 GNP O1G O N N 138 GNP O2G O N N 139 GNP O3G O N N 140 GNP N3B N N N 141 GNP PB P N R 142 GNP O1B O N N 143 GNP O2B O N N 144 GNP O3A O N N 145 GNP PA P N S 146 GNP O1A O N N 147 GNP O2A O N N 148 GNP "O5'" O N N 149 GNP "C5'" C N N 150 GNP "C4'" C N R 151 GNP "O4'" O N N 152 GNP "C3'" C N S 153 GNP "O3'" O N N 154 GNP "C2'" C N R 155 GNP "O2'" O N N 156 GNP "C1'" C N R 157 GNP N9 N Y N 158 GNP C8 C Y N 159 GNP N7 N Y N 160 GNP C5 C Y N 161 GNP C6 C Y N 162 GNP O6 O N N 163 GNP N1 N Y N 164 GNP C2 C Y N 165 GNP N2 N N N 166 GNP N3 N Y N 167 GNP C4 C Y N 168 GNP HOG2 H N N 169 GNP HOG3 H N N 170 GNP HNB3 H N N 171 GNP HOB2 H N N 172 GNP HOA2 H N N 173 GNP "H5'2" H N N 174 GNP "H5'1" H N N 175 GNP "H4'" H N N 176 GNP "H3'" H N N 177 GNP "HO3'" H N N 178 GNP "H2'" H N N 179 GNP "HO2'" H N N 180 GNP "H1'" H N N 181 GNP H8 H N N 182 GNP HN1 H N N 183 GNP HN21 H N N 184 GNP HN22 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 MG MG MG N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TRP N N N N 371 TRP CA C N S 372 TRP C C N N 373 TRP O O N N 374 TRP CB C N N 375 TRP CG C Y N 376 TRP CD1 C Y N 377 TRP CD2 C Y N 378 TRP NE1 N Y N 379 TRP CE2 C Y N 380 TRP CE3 C Y N 381 TRP CZ2 C Y N 382 TRP CZ3 C Y N 383 TRP CH2 C Y N 384 TRP OXT O N N 385 TRP H H N N 386 TRP H2 H N N 387 TRP HA H N N 388 TRP HB2 H N N 389 TRP HB3 H N N 390 TRP HD1 H N N 391 TRP HE1 H N N 392 TRP HE3 H N N 393 TRP HZ2 H N N 394 TRP HZ3 H N N 395 TRP HH2 H N N 396 TRP HXT H N N 397 TYR N N N N 398 TYR CA C N S 399 TYR C C N N 400 TYR O O N N 401 TYR CB C N N 402 TYR CG C Y N 403 TYR CD1 C Y N 404 TYR CD2 C Y N 405 TYR CE1 C Y N 406 TYR CE2 C Y N 407 TYR CZ C Y N 408 TYR OH O N N 409 TYR OXT O N N 410 TYR H H N N 411 TYR H2 H N N 412 TYR HA H N N 413 TYR HB2 H N N 414 TYR HB3 H N N 415 TYR HD1 H N N 416 TYR HD2 H N N 417 TYR HE1 H N N 418 TYR HE2 H N N 419 TYR HH H N N 420 TYR HXT H N N 421 VAL N N N N 422 VAL CA C N S 423 VAL C C N N 424 VAL O O N N 425 VAL CB C N N 426 VAL CG1 C N N 427 VAL CG2 C N N 428 VAL OXT O N N 429 VAL H H N N 430 VAL H2 H N N 431 VAL HA H N N 432 VAL HB H N N 433 VAL HG11 H N N 434 VAL HG12 H N N 435 VAL HG13 H N N 436 VAL HG21 H N N 437 VAL HG22 H N N 438 VAL HG23 H N N 439 VAL HXT H N N 440 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GNP PG O1G doub N N 129 GNP PG O2G sing N N 130 GNP PG O3G sing N N 131 GNP PG N3B sing N N 132 GNP O2G HOG2 sing N N 133 GNP O3G HOG3 sing N N 134 GNP N3B PB sing N N 135 GNP N3B HNB3 sing N N 136 GNP PB O1B doub N N 137 GNP PB O2B sing N N 138 GNP PB O3A sing N N 139 GNP O2B HOB2 sing N N 140 GNP O3A PA sing N N 141 GNP PA O1A doub N N 142 GNP PA O2A sing N N 143 GNP PA "O5'" sing N N 144 GNP O2A HOA2 sing N N 145 GNP "O5'" "C5'" sing N N 146 GNP "C5'" "C4'" sing N N 147 GNP "C5'" "H5'2" sing N N 148 GNP "C5'" "H5'1" sing N N 149 GNP "C4'" "O4'" sing N N 150 GNP "C4'" "C3'" sing N N 151 GNP "C4'" "H4'" sing N N 152 GNP "O4'" "C1'" sing N N 153 GNP "C3'" "O3'" sing N N 154 GNP "C3'" "C2'" sing N N 155 GNP "C3'" "H3'" sing N N 156 GNP "O3'" "HO3'" sing N N 157 GNP "C2'" "O2'" sing N N 158 GNP "C2'" "C1'" sing N N 159 GNP "C2'" "H2'" sing N N 160 GNP "O2'" "HO2'" sing N N 161 GNP "C1'" N9 sing N N 162 GNP "C1'" "H1'" sing N N 163 GNP N9 C8 sing Y N 164 GNP N9 C4 sing Y N 165 GNP C8 N7 doub Y N 166 GNP C8 H8 sing N N 167 GNP N7 C5 sing Y N 168 GNP C5 C6 sing Y N 169 GNP C5 C4 doub Y N 170 GNP C6 O6 doub N N 171 GNP C6 N1 sing Y N 172 GNP N1 C2 sing Y N 173 GNP N1 HN1 sing N N 174 GNP C2 N2 sing N N 175 GNP C2 N3 doub Y N 176 GNP N2 HN21 sing N N 177 GNP N2 HN22 sing N N 178 GNP N3 C4 sing Y N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Polyalanine Rab4 GTPase' # _atom_sites.entry_id 1YZL _atom_sites.fract_transf_matrix[1][1] 0.014636 _atom_sites.fract_transf_matrix[1][2] 0.008450 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012015 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_