HEADER VIRUS/VIRAL PROTEIN 28-FEB-05 1YZO OBSLTE 25-APR-06 1YZO 2GG1 TITLE NMR SOLUTION STRUCTURE OF DOMAIN III OF THE E-PROTEIN OF TITLE 2 TICK-BORNE LANGAT FLAVIVIRUS (INCLUDES RDC RESTRAINTS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III; COMPND 5 SYNONYM: E-PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LANGAT VIRUS; SOURCE 3 ORGANISM_COMMON: VIRUS; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: LGT-E-D3 KEYWDS VIRUS/VIRAL PROTEIN EXPDTA NMR, 20 STRUCTURES AUTHOR M.MUKHERJEE,K.DUTTA,M.WHITE,D.COWBURN,R.O.FOX REVDAT 2 25-APR-06 1YZO 1 OBSLTE REVDAT 1 14-MAR-06 1YZO 0 JRNL AUTH M.MUKHERJEE,K.DUTTA,M.WHITE,D.COWBURN,R.O.FOX JRNL TITL NMR SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF JRNL TITL 2 THE TICK-BORNE LANGAT FLAVIVIRUS E PROTEIN DOMAIN JRNL TITL 3 III SUGGEST A POTENTIAL SITE FOR MOLECULAR JRNL TITL 4 RECOGNITION JRNL REF PROTEIN SCI. 2006 JRNL REFN ASTM PRCIEI US ESSN 1469-896X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA/CNS 2.0/1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YZO COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-2005. REMARK 100 THE RCSB ID CODE IS RCSB032113. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM, U-15N, 13C, 20MM BIS- REMARK 210 TRIS, 10MM NACL, 95% H2O AND REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ, 800 MHZ, REMARK 210 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : ARIA 2.0/CNS 1.1 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 MET A 356 N - CA - C ANGL. DEV. = -5.8 DEGREES REMARK 500 6 MET A 356 N - CA - C ANGL. DEV. = -5.0 DEGREES REMARK 500 8 MET A 356 N - CA - C ANGL. DEV. = -4.9 DEGREES REMARK 500 10 MET A 356 N - CA - C ANGL. DEV. = -4.9 DEGREES REMARK 500 10 PHE A 371 N - CA - C ANGL. DEV. = -4.9 DEGREES REMARK 500 15 MET A 356 N - CA - C ANGL. DEV. = -5.2 DEGREES REMARK 500 18 MET A 356 N - CA - C ANGL. DEV. = -5.1 DEGREES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SVB RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HOMOLOGOUS TICK-BORNE ENCEPHALITIS (TBE) REMARK 900 E-PROTEIN. REMARK 900 RELATED ID: 1S6N RELATED DB: PDB REMARK 900 NMR STRUCTURE OF DOMAIN III OF E-PROTEIN OF WEST NILE REMARK 900 FLAVIVIRUS. REMARK 900 RELATED ID: 1PJW RELATED DB: PDB REMARK 900 NMR STRUCTURE OF DOMAIN III OF E-PROTEIN OF JAPAPNESE REMARK 900 ENCEPHALITIS FLAVIVIRUS. DBREF 1YZO A 300 395 UNP P29838 POLG_LANVY 580 675 SEQRES 1 A 96 LYS GLY LEU THR TYR THR VAL CYS ASP LYS THR LYS PHE SEQRES 2 A 96 THR TRP LYS ARG ALA PRO THR ASP SER GLY HIS ASP THR SEQRES 3 A 96 VAL VAL MET GLU VAL GLY PHE SER GLY THR ARG PRO CYS SEQRES 4 A 96 ARG ILE PRO VAL ARG ALA VAL ALA HIS GLY VAL PRO GLU SEQRES 5 A 96 VAL ASN VAL ALA MET LEU ILE THR PRO ASN PRO THR MET SEQRES 6 A 96 GLU ASN ASN GLY GLY GLY PHE ILE GLU MET GLN LEU PRO SEQRES 7 A 96 PRO GLY ASP ASN ILE ILE TYR VAL GLY ASP LEU ASN HIS SEQRES 8 A 96 GLN TRP PHE GLN LYS SHEET 1 A 3 TRP A 314 ASP A 320 0 SHEET 2 A 3 VAL A 326 VAL A 330 -1 O VAL A 327 N THR A 319 SHEET 3 A 3 PHE A 371 MET A 374 -1 O MET A 374 N VAL A 326 SHEET 1 B 3 VAL A 342 ALA A 346 0 SHEET 2 B 3 GLY A 379 VAL A 385 -1 O TYR A 384 N ARG A 343 SHEET 3 B 3 HIS A 390 GLN A 394 -1 O GLN A 394 N GLY A 379 SSBOND 1 CYS A 307 CYS A 338 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1