HEADER HYDROLASE 01-MAR-05 1Z00 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF ERCC1 COMPLEXED WITH TITLE 2 THE C-TERMINAL DOMAIN OF XPF COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA EXCISION REPAIR PROTEIN ERCC-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA REPAIR ENDONUCLEASE XPF; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL DOMAIN; COMPND 10 SYNONYM: DNA EXCISION REPAIR PROTEIN ERCC-4, DNA-REPAIR PROTEIN COMPND 11 COMPLEMENTING XP-F CELL, XERODERMA PIGMENTOSUM GROUP F COMPLEMENTING COMPND 12 PROTEIN; COMPND 13 EC: 3.1.-.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(ROSETTA) NOVAGEN; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(ROSETTA) NOVAGEN; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HELIX-HAIRPIN-HELIX, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TRIPSIANES,G.FOLKERS,E.AB,D.DAS,H.ODIJK,N.G.J.JASPERS, AUTHOR 2 J.H.J.HOEIJMAKERS,R.KAPTEIN,R.BOELENS REVDAT 4 29-MAY-24 1Z00 1 REMARK REVDAT 3 02-MAR-22 1Z00 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Z00 1 VERSN REVDAT 1 20-DEC-05 1Z00 0 JRNL AUTH K.TRIPSIANES,G.FOLKERS,E.AB,D.DAS,H.ODIJK,N.G.J.JASPERS, JRNL AUTH 2 J.H.J.HOEIJMAKERS,R.KAPTEIN,R.BOELENS JRNL TITL THE STRUCTURE OF THE HUMAN ERCC1/XPF INTERACTION DOMAINS JRNL TITL 2 REVEALS A COMPLEMENTARY ROLE FOR THE TWO PROTEINS IN JRNL TITL 3 NUCLEOTIDE EXCISION REPAIR JRNL REF STRUCTURE V. 13 1849 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16338413 JRNL DOI 10.1016/J.STR.2005.08.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 4547 NOE-DERIVED REMARK 3 DISTANCE RESTRAINTS, 197 TALOS BASED DIHEDRAL ANGLE RESTRAINTS AND REMARK 3 DISTANCE RESTRAINTS FOR 52 HYDROGEN BONDS REMARK 4 REMARK 4 1Z00 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032125. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295.5 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE, 100MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5MM ERCC1-XPF U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER NA: 92% H2O, 8% REMARK 210 D2O; 1MM ERCC1-XPF U-15N; 50MM REMARK 210 PHOSPHATE BUFFER NA: 92% H2O, 8% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D NOESY-(13C,1H)-HSQC; 3D NOESY REMARK 210 -(15N,1H)-HSQC; 3D (13C)-HMQC- REMARK 210 NOESY-(13C,1H)-HSQC; 3D (13C)- REMARK 210 HMQC-NOESY-(15N 1H)-HSQC; 2D REMARK 210 NOESY; 2D NOESY 15N FILTERED REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, SPARKY 3.110, CYANA REMARK 210 2.0 REMARK 210 METHOD USED : WATER REFINMENT IN CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 228 HZ3 LYS B 902 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 223 135.01 -173.39 REMARK 500 1 PRO A 275 31.14 -66.44 REMARK 500 1 LEU A 277 -80.17 -116.73 REMARK 500 1 LYS A 295 -74.69 70.04 REMARK 500 1 ASP B 823 76.54 54.24 REMARK 500 1 GLU B 825 129.51 58.53 REMARK 500 1 PRO B 845 -70.30 -57.56 REMARK 500 2 ASP A 221 24.74 -62.21 REMARK 500 2 LEU A 277 -88.83 -127.04 REMARK 500 2 LYS A 295 -83.13 65.65 REMARK 500 2 SER B 824 83.17 69.36 REMARK 500 2 PRO B 828 31.22 -75.48 REMARK 500 2 ASN B 834 107.08 -59.17 REMARK 500 2 SER B 899 -168.72 -123.11 REMARK 500 2 LYS B 900 -66.95 68.51 REMARK 500 2 LYS B 902 -76.90 -106.06 REMARK 500 2 LYS B 904 148.70 73.11 REMARK 500 3 LEU A 222 -68.13 175.45 REMARK 500 3 LEU A 223 160.31 173.67 REMARK 500 3 LEU A 277 -89.98 -131.72 REMARK 500 3 LYS A 295 -84.92 65.93 REMARK 500 3 LEU A 300 58.45 -105.67 REMARK 500 3 PRO B 828 38.63 -77.31 REMARK 500 3 LYS B 902 9.98 -154.96 REMARK 500 3 LYS B 904 162.07 71.62 REMARK 500 4 ASP A 221 24.74 -70.84 REMARK 500 4 LEU A 222 -53.97 70.70 REMARK 500 4 PRO A 275 7.04 -67.68 REMARK 500 4 LEU A 277 -92.21 -120.29 REMARK 500 4 LYS A 295 -83.05 64.99 REMARK 500 4 ASP B 823 -69.69 67.72 REMARK 500 4 PRO B 828 35.78 -76.42 REMARK 500 5 LEU A 223 141.17 174.34 REMARK 500 5 PRO A 275 20.83 -63.04 REMARK 500 5 LEU A 277 -85.36 -107.96 REMARK 500 5 LYS A 295 -78.00 66.68 REMARK 500 5 ASP B 823 -79.00 -131.55 REMARK 500 5 PRO B 828 29.73 -78.41 REMARK 500 5 SER B 830 -10.57 -49.46 REMARK 500 5 LYS B 902 -71.13 -92.36 REMARK 500 6 LEU A 222 -43.56 68.79 REMARK 500 6 SER A 267 -166.64 -107.27 REMARK 500 6 LEU A 277 -84.08 -123.40 REMARK 500 6 LYS A 295 -80.08 67.52 REMARK 500 6 ASP B 823 -76.37 -139.74 REMARK 500 6 PRO B 828 32.93 -73.68 REMARK 500 6 SER B 830 -19.41 -48.01 REMARK 500 6 LYS B 902 178.86 61.15 REMARK 500 7 PRO A 275 -8.10 -56.02 REMARK 500 7 LEU A 277 -91.52 -108.33 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 234 0.10 SIDE CHAIN REMARK 500 13 ARG A 234 0.07 SIDE CHAIN REMARK 500 14 ARG A 283 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1Z00 A 220 297 UNP P07992 ERCC1_HUMAN 220 297 DBREF 1Z00 B 823 905 UNP Q92889 ERCC4_HUMAN 823 905 SEQADV 1Z00 MET A 219 UNP P07992 INITIATING METHIONINE SEQADV 1Z00 GLY A 298 UNP P07992 EXPRESSION TAG SEQADV 1Z00 GLY A 299 UNP P07992 EXPRESSION TAG SEQADV 1Z00 LEU A 300 UNP P07992 EXPRESSION TAG SEQADV 1Z00 GLU A 301 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 302 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 303 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 304 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 305 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 306 UNP P07992 EXPRESSION TAG SEQADV 1Z00 HIS A 307 UNP P07992 EXPRESSION TAG SEQADV 1Z00 MET B 822 UNP Q92889 INITIATING METHIONINE SEQRES 1 A 89 MET ALA ASP LEU LEU MET GLU LYS LEU GLU GLN ASP PHE SEQRES 2 A 89 VAL SER ARG VAL THR GLU CYS LEU THR THR VAL LYS SER SEQRES 3 A 89 VAL ASN LYS THR ASP SER GLN THR LEU LEU THR THR PHE SEQRES 4 A 89 GLY SER LEU GLU GLN LEU ILE ALA ALA SER ARG GLU ASP SEQRES 5 A 89 LEU ALA LEU CYS PRO GLY LEU GLY PRO GLN LYS ALA ARG SEQRES 6 A 89 ARG LEU PHE ASP VAL LEU HIS GLU PRO PHE LEU LYS VAL SEQRES 7 A 89 PRO GLY GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 84 MET ASP SER GLU THR LEU PRO GLU SER GLU LYS TYR ASN SEQRES 2 B 84 PRO GLY PRO GLN ASP PHE LEU LEU LYS MET PRO GLY VAL SEQRES 3 B 84 ASN ALA LYS ASN CYS ARG SER LEU MET HIS HIS VAL LYS SEQRES 4 B 84 ASN ILE ALA GLU LEU ALA ALA LEU SER GLN ASP GLU LEU SEQRES 5 B 84 THR SER ILE LEU GLY ASN ALA ALA ASN ALA LYS GLN LEU SEQRES 6 B 84 TYR ASP PHE ILE HIS THR SER PHE ALA GLU VAL VAL SER SEQRES 7 B 84 LYS GLY LYS GLY LYS LYS HELIX 1 1 LEU A 223 THR A 240 1 18 HELIX 2 2 ASN A 246 PHE A 257 1 12 HELIX 3 3 SER A 259 ALA A 266 1 8 HELIX 4 4 SER A 267 LEU A 273 1 7 HELIX 5 5 GLY A 278 GLU A 291 1 14 HELIX 6 6 LEU B 827 LYS B 832 5 6 HELIX 7 7 ASN B 834 LYS B 843 1 10 HELIX 8 8 ASN B 848 VAL B 859 1 12 HELIX 9 9 ASN B 861 LEU B 868 1 8 HELIX 10 10 SER B 869 GLY B 878 1 10 HELIX 11 11 ASN B 879 HIS B 891 1 13 HELIX 12 12 SER B 893 VAL B 898 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1