HEADER TRANSCRIPTION 01-MAR-05 1Z05 TITLE CRYSTAL STRUCTURE OF THE ROK FAMILY TRANSCRIPTIONAL REGULATOR, HOMOLOG TITLE 2 OF E.COLI MLC PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, ROK FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: AAF95155; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ROK FAMILY, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,J.S.BRUNZELLE,L.SHUVALOVA,F.R.COLLART,W.F.ANDERSON,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-JUN-18 1Z05 1 SEQADV REVDAT 4 11-OCT-17 1Z05 1 REMARK REVDAT 3 13-JUL-11 1Z05 1 VERSN REVDAT 2 24-FEB-09 1Z05 1 VERSN REVDAT 1 08-MAR-05 1Z05 0 JRNL AUTH G.MINASOV,J.S.BRUNZELLE,L.SHUVALOVA,F.R.COLLART,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THE ROK FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR, HOMOLOG OF E.COLI MLC PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 31297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 3.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3287 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4480 ; 1.098 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;38.184 ;24.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;13.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1582 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2316 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 320 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 1.048 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3331 ; 1.671 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1288 ; 2.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1149 ; 4.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 82 REMARK 3 RESIDUE RANGE : A 395 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5622 24.4556 16.6833 REMARK 3 T TENSOR REMARK 3 T11: -0.2467 T22: -0.1168 REMARK 3 T33: -0.1675 T12: -0.0089 REMARK 3 T13: 0.0213 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 6.1598 L22: 4.7606 REMARK 3 L33: 5.2451 L12: -2.0575 REMARK 3 L13: 2.1239 L23: -2.5439 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: 0.0499 S13: -0.0696 REMARK 3 S21: 0.2374 S22: 0.0345 S23: 0.3346 REMARK 3 S31: -0.1264 S32: -0.1312 S33: -0.1083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1221 20.1582 34.0140 REMARK 3 T TENSOR REMARK 3 T11: -0.1140 T22: -0.2065 REMARK 3 T33: -0.2198 T12: -0.0059 REMARK 3 T13: -0.0586 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.8450 L22: 4.4043 REMARK 3 L33: 2.2518 L12: -0.3758 REMARK 3 L13: 1.0943 L23: -0.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.0907 S13: 0.0719 REMARK 3 S21: 0.5190 S22: -0.0586 S23: -0.3053 REMARK 3 S31: -0.1488 S32: 0.1287 S33: 0.1185 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2413 -3.3882 22.6964 REMARK 3 T TENSOR REMARK 3 T11: -0.1324 T22: -0.1482 REMARK 3 T33: -0.1734 T12: -0.0160 REMARK 3 T13: -0.0017 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.3236 L22: 2.0743 REMARK 3 L33: 0.7874 L12: -1.7145 REMARK 3 L13: -0.6755 L23: 0.5043 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.0007 S13: 0.0535 REMARK 3 S21: -0.0307 S22: 0.0727 S23: -0.1438 REMARK 3 S31: -0.0478 S32: 0.1789 S33: -0.1495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Z05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 1.5M AMMONIUM SO4, 12% REMARK 280 GLYCEROL, 5MM BETA-MERCAPTOETHANOL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.14550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.85950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.57275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.85950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.71825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.85950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.57275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.85950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.85950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.71825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.14550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLY A DIMER. THE SECON PART COULD BE GENERATED BY THE REMARK 300 TWO FOLD AXIS: -Y,-X,-Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.14550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 ILE A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 70.14 -109.11 REMARK 500 ASP A 143 -113.40 -123.04 REMARK 500 ASP A 143 -114.55 -123.04 REMARK 500 HIS A 168 -57.79 75.03 REMARK 500 HIS A 219 -127.24 -150.96 REMARK 500 GLN A 251 55.84 -113.44 REMARK 500 TYR A 378 -52.00 -155.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 245 ND1 REMARK 620 2 CYS A 255 SG 104.1 REMARK 620 3 CYS A 257 SG 110.1 103.7 REMARK 620 4 CYS A 262 SG 122.0 107.3 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26690 RELATED DB: TARGETDB DBREF 1Z05 A 1 405 UNP Q9KQJ1 Q9KQJ1_VIBCH 1 405 SEQADV 1Z05 MET A -23 UNP Q9KQJ1 INITIATING METHIONINE SEQADV 1Z05 HIS A -22 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -21 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -20 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -19 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -18 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 HIS A -17 UNP Q9KQJ1 EXPRESSION TAG SEQADV 1Z05 SER A -16 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 SER A -15 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLY A -14 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 VAL A -13 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASP A -12 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 LEU A -11 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLY A -10 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 THR A -9 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLU A -8 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASN A -7 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 LEU A -6 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 TYR A -5 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 PHE A -4 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 GLN A -3 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 SER A -2 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ASN A -1 UNP Q9KQJ1 CLONING ARTIFACT SEQADV 1Z05 ALA A 0 UNP Q9KQJ1 CLONING ARTIFACT SEQRES 1 A 429 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 429 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET TYR SEQRES 3 A 429 MET ALA GLN PRO GLY HIS ILE ASP HIS ILE LYS GLN ILE SEQRES 4 A 429 ASN ALA GLY ARG VAL TYR LYS LEU ILE ASP GLN LYS GLY SEQRES 5 A 429 PRO ILE SER ARG ILE ASP LEU SER LYS GLU SER GLU LEU SEQRES 6 A 429 ALA PRO ALA SER ILE THR LYS ILE THR ARG GLU LEU ILE SEQRES 7 A 429 ASP ALA HIS LEU ILE HIS GLU THR THR VAL GLN GLU ALA SEQRES 8 A 429 ILE SER ARG GLY ARG PRO ALA VAL GLY LEU GLN THR ASN SEQRES 9 A 429 ASN LEU GLY TRP GLN PHE LEU SER MET ARG LEU GLY ARG SEQRES 10 A 429 GLY TYR LEU THR ILE ALA LEU HIS GLU LEU GLY GLY GLU SEQRES 11 A 429 VAL LEU ILE ASP THR LYS ILE ASP ILE HIS GLU ILE ASP SEQRES 12 A 429 GLN ASP ASP VAL LEU ALA ARG LEU LEU PHE GLU ILE GLU SEQRES 13 A 429 GLU PHE PHE GLN THR TYR ALA ALA GLN LEU ASP ARG VAL SEQRES 14 A 429 THR SER ILE ALA ILE THR LEU PRO GLY LEU VAL ASN SER SEQRES 15 A 429 GLU GLN GLY ILE VAL LEU GLN MET PRO HIS TYR ASN VAL SEQRES 16 A 429 LYS ASN LEU ALA LEU GLY PRO GLU ILE TYR LYS ALA THR SEQRES 17 A 429 GLY LEU PRO VAL PHE VAL ALA ASN ASP THR ARG ALA TRP SEQRES 18 A 429 ALA LEU ALA GLU LYS LEU PHE GLY HIS SER GLN ASP VAL SEQRES 19 A 429 ASP ASN SER VAL LEU ILE SER ILE HIS HIS GLY LEU GLY SEQRES 20 A 429 ALA GLY ILE VAL LEU ASP GLY ARG VAL LEU GLN GLY ARG SEQRES 21 A 429 HIS GLY ASN ILE GLY GLU LEU GLY HIS ILE GLN ILE ASP SEQRES 22 A 429 PRO GLN GLY LYS ARG CYS HIS CYS GLY ASN TYR GLY CYS SEQRES 23 A 429 LEU GLU THR VAL ALA SER SER GLN ALA ILE ARG ASP GLN SEQRES 24 A 429 VAL THR ALA ARG ILE GLN ALA GLY GLU PRO SER CYS LEU SEQRES 25 A 429 ALA THR VAL GLU GLU ILE SER ILE GLU ASP ILE CYS ALA SEQRES 26 A 429 ALA ALA ALA ASP GLY ASP PRO LEU ALA VAL ASP VAL ILE SEQRES 27 A 429 GLN GLN LEU GLY ARG TYR LEU GLY ALA ALA ILE ALA ILE SEQRES 28 A 429 VAL ILE ASN LEU PHE ASN PRO GLU LYS ILE LEU ILE GLY SEQRES 29 A 429 GLY VAL ILE ASN GLN ALA LYS SER ILE LEU TYR PRO SER SEQRES 30 A 429 ILE GLU GLN CYS ILE ARG GLU GLN SER LEU PRO VAL TYR SEQRES 31 A 429 HIS GLN ASP LEU LYS LEU VAL GLU SER ARG PHE TYR LYS SEQRES 32 A 429 GLN ALA THR MET PRO GLY ALA ALA LEU ILE LYS GLN ALA SEQRES 33 A 429 LEU TYR ASP GLY LEU LEU LEU MET LYS VAL VAL GLU GLY HET ZN A 406 1 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET BME A 413 4 HET GOL A 414 6 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 BME C2 H6 O S FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *396(H2 O) HELIX 1 1 ASP A 10 GLY A 28 1 19 HELIX 2 2 SER A 31 GLU A 40 1 10 HELIX 3 3 ALA A 42 ALA A 56 1 15 HELIX 4 4 THR A 63 GLY A 71 1 9 HELIX 5 5 ASP A 119 TYR A 138 1 20 HELIX 6 6 ALA A 175 GLY A 185 1 11 HELIX 7 7 ASP A 193 GLY A 205 1 13 HELIX 8 8 LEU A 263 SER A 268 1 6 HELIX 9 9 SER A 268 ALA A 282 1 15 HELIX 10 10 SER A 295 ASP A 305 1 11 HELIX 11 11 ASP A 307 ASN A 333 1 27 HELIX 12 12 GLY A 341 GLN A 345 5 5 HELIX 13 13 ALA A 346 SER A 362 1 17 HELIX 14 14 LEU A 363 GLN A 368 1 6 HELIX 15 15 THR A 382 ASP A 395 1 14 HELIX 16 16 GLY A 396 GLY A 405 1 10 SHEET 1 A 2 ILE A 59 THR A 62 0 SHEET 2 A 2 VAL A 75 THR A 79 -1 O GLN A 78 N HIS A 60 SHEET 1 B 5 VAL A 107 ASP A 114 0 SHEET 2 B 5 TYR A 95 GLU A 102 -1 N LEU A 100 O LEU A 108 SHEET 3 B 5 TRP A 84 GLY A 92 -1 N PHE A 86 O HIS A 101 SHEET 4 B 5 ARG A 144 LEU A 152 1 O ALA A 149 N MET A 89 SHEET 5 B 5 VAL A 188 ASN A 192 1 O PHE A 189 N ILE A 150 SHEET 1 C 2 LEU A 155 ASN A 157 0 SHEET 2 C 2 ILE A 162 GLN A 165 -1 O ILE A 162 N ASN A 157 SHEET 1 D 5 ARG A 231 VAL A 232 0 SHEET 2 D 5 LEU A 222 LEU A 228 -1 N LEU A 228 O ARG A 231 SHEET 3 D 5 SER A 213 ILE A 218 -1 N SER A 217 O GLY A 223 SHEET 4 D 5 LYS A 336 GLY A 340 1 O LEU A 338 N ILE A 216 SHEET 5 D 5 LYS A 371 GLU A 374 1 O VAL A 373 N ILE A 337 LINK SG ACYS A 357 S2 ABME A 413 1555 1555 1.94 LINK ZN ZN A 406 ND1 HIS A 245 1555 1555 2.13 LINK ZN ZN A 406 SG CYS A 255 1555 1555 2.46 LINK ZN ZN A 406 SG CYS A 257 1555 1555 2.32 LINK ZN ZN A 406 SG CYS A 262 1555 1555 2.27 CISPEP 1 GLY A 28 PRO A 29 0 -0.20 SITE 1 AC1 4 HIS A 245 CYS A 255 CYS A 257 CYS A 262 SITE 1 AC2 8 ARG A 90 GLY A 92 ARG A 93 TYR A 95 SITE 2 AC2 8 HIS A 219 HIS A 220 HOH A 521 HOH A 735 SITE 1 AC3 8 ARG A 93 HIS A 219 HIS A 220 GLY A 221 SITE 2 AC3 8 HOH A 437 HOH A 520 HOH A 722 HOH A 802 SITE 1 AC4 5 GLU A 355 ILE A 358 ARG A 359 HIS A 367 SITE 2 AC4 5 LEU A 370 SITE 1 AC5 6 PRO A 167 HIS A 168 HOH A 714 HOH A 716 SITE 2 AC5 6 HOH A 718 HOH A 775 SITE 1 AC6 4 THR A 47 ARG A 51 HOH A 509 HOH A 739 SITE 1 AC7 5 GLN A 316 ARG A 319 TYR A 320 HOH A 776 SITE 2 AC7 5 HOH A 777 SITE 1 AC8 7 GLN A 356 CYS A 357 GLU A 360 HOH A 454 SITE 2 AC8 7 HOH A 737 HOH A 749 HOH A 750 SITE 1 AC9 7 GLN A 345 ALA A 346 LYS A 347 SER A 348 SITE 2 AC9 7 HOH A 772 HOH A 785 HOH A 792 CRYST1 93.719 93.719 118.291 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008454 0.00000