HEADER TRANSCRIPTION 02-MAR-05 1Z0R TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION DOMAIN OF THE TITLE 2 BACILLUS SUBTILIS TRANSCRIPTION-STATE REGULATOR ABRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITION STATE REGULATORY PROTEIN ABRB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DIMER FROM RESIDUES 1-53 (OF 94); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ABRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE)3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-24 KEYWDS SCOP DATABASE, N-TERMINAL DNA-BINDING DOMAIN, TRANSITION STATE KEYWDS 2 REGULATOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 7 AUTHOR B.G.BOBAY,A.ANDREEVA,G.A.MUELLER,J.CAVANAGH,A.G.MURZIN REVDAT 5 29-MAY-24 1Z0R 1 REMARK REVDAT 4 02-MAR-22 1Z0R 1 REMARK REVDAT 3 24-FEB-09 1Z0R 1 VERSN REVDAT 2 01-NOV-05 1Z0R 1 JRNL REVDAT 1 15-MAR-05 1Z0R 0 SPRSDE 15-MAR-05 1Z0R 1EKT JRNL AUTH B.G.BOBAY,A.ANDREEVA,G.A.MUELLER,J.CAVANAGH,A.G.MURZIN JRNL TITL REVISED STRUCTURE OF THE ABRB N-TERMINAL DOMAIN UNIFIES A JRNL TITL 2 DIVERSE SUPERFAMILY OF PUTATIVE DNA-BINDING PROTEINS. JRNL REF FEBS LETT. V. 579 5669 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 16223496 JRNL DOI 10.1016/J.FEBSLET.2005.09.045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE JULY 15TH 2004, ARIA 1.2 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), NILGES, M. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z0R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032152. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 15MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM ABRB; 95% PURE; 20MM REMARK 210 PHOSPHATE, 15MM KCL, 1MM EDTA, REMARK 210 1MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3-D 13C/15N REMARK 210 SEQUENTIAL ASSIGNMENT PROTOCOLS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0, ARIA 1.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NEW RELATIONSHIPS FOUND IN PROCESS OF UPDATING THE SCOP REMARK 210 DATABASE RESULTED IN REVISION OF THE STRUCTURE OF THE N-TERMINAL, REMARK 210 DNA-BINDING DOMAIN OF THE TRANSITION STATE REGULATOR ABRB. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD13 ILE A 28 HD23 LEU A 34 1.22 REMARK 500 HD13 ILE B 28 HD23 LEU B 34 1.32 REMARK 500 OE1 GLU B 35 HZ2 LYS B 46 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -124.51 -163.30 REMARK 500 1 ASP A 11 -91.81 73.32 REMARK 500 1 GLU A 12 -54.24 -161.12 REMARK 500 1 ASP A 40 -67.42 61.46 REMARK 500 1 PRO A 50 41.25 -75.74 REMARK 500 1 LYS B 2 -120.35 -168.98 REMARK 500 1 ASP B 11 -109.84 71.65 REMARK 500 1 GLU B 12 -42.23 -151.63 REMARK 500 1 ASP B 40 -70.46 62.72 REMARK 500 2 LYS A 2 -133.77 -146.60 REMARK 500 2 ASP A 11 -147.28 66.29 REMARK 500 2 ILE A 28 -157.66 -88.12 REMARK 500 2 ASP A 40 -79.37 60.79 REMARK 500 2 GLU A 41 20.82 -141.25 REMARK 500 2 LYS B 2 -104.25 -136.91 REMARK 500 2 ASP B 11 -148.43 70.17 REMARK 500 2 ILE B 28 -153.45 -78.34 REMARK 500 2 ALA B 29 -105.92 -153.44 REMARK 500 2 GLU B 30 -39.34 -154.70 REMARK 500 2 ASP B 40 -13.31 67.04 REMARK 500 2 GLU B 41 -15.46 -179.91 REMARK 500 3 LYS A 2 -151.08 63.22 REMARK 500 3 ASP A 11 -133.34 66.94 REMARK 500 3 GLU A 12 -37.13 -131.19 REMARK 500 3 ILE A 28 -153.75 -83.11 REMARK 500 3 ALA A 29 -168.61 -162.47 REMARK 500 3 ASP A 40 -73.82 67.87 REMARK 500 3 GLU A 41 17.88 -155.50 REMARK 500 3 LYS B 2 -148.00 62.93 REMARK 500 3 ASP B 11 -145.14 64.69 REMARK 500 3 ILE B 28 -157.95 -88.81 REMARK 500 3 ASP B 40 -69.47 69.73 REMARK 500 3 GLU B 41 20.82 -158.81 REMARK 500 4 LYS A 2 -151.01 64.68 REMARK 500 4 THR A 4 -34.51 -135.77 REMARK 500 4 ASP A 11 -135.62 66.35 REMARK 500 4 GLU A 12 -47.96 -130.25 REMARK 500 4 ILE A 28 -156.29 -81.10 REMARK 500 4 ASP A 40 -83.73 64.83 REMARK 500 4 GLU A 41 18.15 -143.97 REMARK 500 4 LYS B 2 -155.37 66.01 REMARK 500 4 THR B 4 -39.66 -137.86 REMARK 500 4 ASP B 11 -136.74 67.18 REMARK 500 4 GLU B 12 -42.33 -131.56 REMARK 500 4 ILE B 28 -156.36 -80.90 REMARK 500 4 ASP B 40 -87.11 60.85 REMARK 500 4 GLU B 41 29.81 -144.43 REMARK 500 5 LYS A 2 -140.28 -151.92 REMARK 500 5 ASP A 11 -124.45 68.51 REMARK 500 5 GLU A 12 -40.40 -142.90 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MVF RELATED DB: PDB REMARK 900 MAZE ADDICTION ANTIDOTE REMARK 900 RELATED ID: 1N0F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS REMARK 900 PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL REMARK 900 FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF DBREF 1Z0R A 1 53 UNP P08874 ABRB_BACSU 3 55 DBREF 1Z0R B 1 53 UNP P08874 ABRB_BACSU 3 55 SEQRES 1 A 53 MET LYS SER THR GLY ILE VAL ARG LYS VAL ASP GLU LEU SEQRES 2 A 53 GLY ARG VAL VAL ILE PRO ILE GLU LEU ARG ARG THR LEU SEQRES 3 A 53 GLY ILE ALA GLU LYS ASP ALA LEU GLU ILE TYR VAL ASP SEQRES 4 A 53 ASP GLU LYS ILE ILE LEU LYS LYS TYR LYS PRO ASN MET SEQRES 5 A 53 THR SEQRES 1 B 53 MET LYS SER THR GLY ILE VAL ARG LYS VAL ASP GLU LEU SEQRES 2 B 53 GLY ARG VAL VAL ILE PRO ILE GLU LEU ARG ARG THR LEU SEQRES 3 B 53 GLY ILE ALA GLU LYS ASP ALA LEU GLU ILE TYR VAL ASP SEQRES 4 B 53 ASP GLU LYS ILE ILE LEU LYS LYS TYR LYS PRO ASN MET SEQRES 5 B 53 THR HELIX 1 1 PRO A 19 LEU A 26 1 8 HELIX 2 2 PRO B 19 LEU B 26 1 8 SHEET 1 A 6 ILE A 6 LYS A 9 0 SHEET 2 A 6 ALA B 33 ASP B 39 -1 O ILE B 36 N ILE A 6 SHEET 3 A 6 LYS B 42 LYS B 47 -1 O ILE B 44 N TYR B 37 SHEET 4 A 6 LYS A 42 LYS A 47 -1 N ILE A 43 O LEU B 45 SHEET 5 A 6 ALA A 33 ASP A 39 -1 N TYR A 37 O ILE A 44 SHEET 6 A 6 ILE B 6 LYS B 9 -1 O ILE B 6 N ILE A 36 SHEET 1 B 2 ARG A 15 VAL A 17 0 SHEET 2 B 2 ARG B 15 VAL B 17 -1 O VAL B 16 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1