HEADER LIGASE 04-MAR-05 1Z1M TITLE NMR STRUCTURE OF UNLIGANDED MDM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-PROTEIN LIGASE E3 MDM2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: P53-BINDING PROTEIN MDM2, ONCOPROTEIN MDM2, DOUBLE MINUTE 2 COMPND 6 PROTEIN, HDM2; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS KEYWDS PEPTIDE-BINDING GROOVE, PSUDOSYMMETRY, ALPHA-BETA DOMAINS, LIGASE EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR S.UHRINOVA,D.UHRIN,H.POWERS,K.WATT,D.ZHELEVA,P.FISCHER,C.MCINNES, AUTHOR 2 P.N.BARLOW REVDAT 5 29-MAY-24 1Z1M 1 REMARK REVDAT 4 02-MAR-22 1Z1M 1 REMARK SEQADV REVDAT 3 24-FEB-09 1Z1M 1 VERSN REVDAT 2 29-NOV-05 1Z1M 1 TITLE REVDAT 1 28-JUN-05 1Z1M 0 JRNL AUTH S.UHRINOVA,D.UHRIN,H.POWERS,K.WATT,D.ZHELEVA,P.FISCHER, JRNL AUTH 2 C.MCINNES,P.N.BARLOW JRNL TITL STRUCTURE OF FREE MDM2 N-TERMINAL DOMAIN REVEALS JRNL TITL 2 CONFORMATIONAL ADJUSTMENTS THAT ACCOMPANY P53-BINDING JRNL REF J.MOL.BIOL. V. 350 587 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15953616 JRNL DOI 10.1016/J.JMB.2005.05.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA, CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z1M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032183. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5MM HDM2(1-118), 60MM REMARK 210 DEUTERATED SODIUM ACETATE, 60MM REMARK 210 PHOSPHATE BUFFER; 0.5MM HDM2(1- REMARK 210 118), 60MM DEUTERATED SODIUM REMARK 210 ACETATE, 60MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 110 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 -16.93 -146.71 REMARK 500 1 MET A 6 11.19 -145.82 REMARK 500 1 SER A 7 176.25 61.51 REMARK 500 1 PRO A 9 24.69 -79.90 REMARK 500 1 ALA A 13 -173.21 58.68 REMARK 500 1 GLN A 18 -56.32 -162.87 REMARK 500 1 PRO A 20 96.20 -66.16 REMARK 500 1 ALA A 21 18.60 -163.51 REMARK 500 1 SER A 22 -53.79 -176.70 REMARK 500 1 GLU A 25 -79.97 -78.04 REMARK 500 1 THR A 26 126.26 85.00 REMARK 500 1 PRO A 32 97.93 -43.43 REMARK 500 1 LEU A 33 -42.10 -172.75 REMARK 500 1 GLN A 44 77.33 -173.33 REMARK 500 1 LEU A 54 -72.20 -53.19 REMARK 500 1 ASP A 68 -151.99 -52.57 REMARK 500 1 GLU A 69 20.84 -150.92 REMARK 500 1 LYS A 70 -62.32 -102.94 REMARK 500 1 HIS A 73 -10.94 -140.24 REMARK 500 1 ILE A 74 76.68 -105.14 REMARK 500 1 PHE A 86 -71.05 -115.76 REMARK 500 1 ARG A 105 -72.06 -68.19 REMARK 500 1 ASN A 106 -81.95 -79.51 REMARK 500 1 LEU A 107 146.71 -172.42 REMARK 500 1 VAL A 108 111.78 -176.15 REMARK 500 1 ASN A 111 -70.01 -87.40 REMARK 500 1 GLN A 112 93.35 57.42 REMARK 500 1 SER A 116 40.20 -87.56 REMARK 500 1 ASP A 117 -83.69 61.93 REMARK 500 2 PRO A 9 -178.27 -62.42 REMARK 500 2 THR A 10 129.12 66.23 REMARK 500 2 ALA A 13 -173.38 59.18 REMARK 500 2 VAL A 14 -72.49 -100.77 REMARK 500 2 SER A 17 173.45 61.97 REMARK 500 2 GLN A 18 -41.50 -150.41 REMARK 500 2 GLU A 23 -76.58 -85.20 REMARK 500 2 THR A 26 -39.11 84.51 REMARK 500 2 LEU A 27 83.33 52.19 REMARK 500 2 PRO A 32 95.21 -45.19 REMARK 500 2 LEU A 33 -30.00 -169.68 REMARK 500 2 LEU A 35 -44.62 -134.69 REMARK 500 2 GLN A 44 68.10 -150.57 REMARK 500 2 LEU A 54 -71.33 -48.82 REMARK 500 2 GLN A 59 -70.88 -51.83 REMARK 500 2 MET A 62 1.49 -69.59 REMARK 500 2 ARG A 65 80.32 55.32 REMARK 500 2 GLU A 69 -20.48 73.03 REMARK 500 2 HIS A 73 -67.96 -96.14 REMARK 500 2 SER A 78 89.35 52.40 REMARK 500 2 LEU A 85 -76.50 -55.00 REMARK 500 REMARK 500 THIS ENTRY HAS 668 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 18 ILE A 19 1 -148.82 REMARK 500 THR A 26 LEU A 27 5 143.60 REMARK 500 THR A 26 LEU A 27 6 140.76 REMARK 500 THR A 26 LEU A 27 7 144.92 REMARK 500 LEU A 35 LYS A 36 10 146.43 REMARK 500 THR A 26 LEU A 27 11 148.25 REMARK 500 LEU A 35 LYS A 36 11 147.07 REMARK 500 LEU A 38 LYS A 39 13 145.46 REMARK 500 GLN A 18 ILE A 19 14 -148.87 REMARK 500 GLN A 18 ILE A 19 15 142.87 REMARK 500 GLU A 25 THR A 26 15 -147.03 REMARK 500 GLU A 25 THR A 26 16 -145.03 REMARK 500 THR A 26 LEU A 27 16 -136.32 REMARK 500 THR A 26 LEU A 27 17 143.80 REMARK 500 LEU A 35 LYS A 36 17 -149.69 REMARK 500 THR A 26 LEU A 27 18 144.27 REMARK 500 ASP A 84 LEU A 85 20 -146.30 REMARK 500 THR A 26 LEU A 27 21 142.92 REMARK 500 LYS A 45 ASP A 46 22 -148.56 REMARK 500 GLN A 18 ILE A 19 23 -149.99 REMARK 500 THR A 26 LEU A 27 23 148.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 1Z1M A 1 118 UNP Q00987 MDM2_HUMAN 1 118 SEQADV 1Z1M SER A 119 UNP Q00987 CLONING ARTIFACT SEQRES 1 A 119 MET CYS ASN THR ASN MET SER VAL PRO THR ASP GLY ALA SEQRES 2 A 119 VAL THR THR SER GLN ILE PRO ALA SER GLU GLN GLU THR SEQRES 3 A 119 LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SEQRES 4 A 119 SER VAL GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU SEQRES 5 A 119 VAL LEU PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG SEQRES 6 A 119 LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER SEQRES 7 A 119 ASN ASP LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SEQRES 8 A 119 SER VAL LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR SEQRES 9 A 119 ARG ASN LEU VAL VAL VAL ASN GLN GLN GLU SER SER ASP SEQRES 10 A 119 SER SER HELIX 1 1 LEU A 34 GLY A 42 1 9 HELIX 2 2 LYS A 51 THR A 63 1 13 HELIX 3 3 ASP A 80 PHE A 86 1 7 HELIX 4 4 GLU A 95 TYR A 104 1 10 SHEET 1 A 2 ILE A 74 VAL A 75 0 SHEET 2 A 2 PHE A 91 SER A 92 -1 O PHE A 91 N VAL A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1