data_1Z2J # _entry.id 1Z2J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z2J pdb_00001z2j 10.2210/pdb1z2j/pdb RCSB RCSB032216 ? ? WWPDB D_1000032216 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1PJY _pdbx_database_related.details 'HIV-1 frameshift site stem-loop' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z2J _pdbx_database_status.recvd_initial_deposition_date 2005-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Staple, D.W.' 1 'Butcher, S.E.' 2 # _citation.id primary _citation.title 'Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 349 _citation.page_first 1011 _citation.page_last 1023 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15927637 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.03.038 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Staple, D.W.' 1 ? primary 'Butcher, S.E.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'HIV-1 frameshift site RNA' _entity.formula_weight 14519.708 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 C n 1 10 U n 1 11 G n 1 12 G n 1 13 C n 1 14 C n 1 15 U n 1 16 U n 1 17 C n 1 18 C n 1 19 C n 1 20 A n 1 21 C n 1 22 A n 1 23 A n 1 24 G n 1 25 G n 1 26 G n 1 27 A n 1 28 A n 1 29 G n 1 30 G n 1 31 C n 1 32 C n 1 33 A n 1 34 G n 1 35 G n 1 36 G n 1 37 A n 1 38 A n 1 39 U n 1 40 C n 1 41 U n 1 42 U n 1 43 C n 1 44 C n 1 45 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA was produced from in vitro transcripton with T7 RNA ploymerase from DNA templates.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1Z2J _struct_ref.pdbx_db_accession 1Z2J _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z2J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 45 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1Z2J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 45 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 45 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 3D_13C-separated_NOESY 1 4 2 '2D NOESY' 2 5 2 HNN-COSY 2 6 1 HCCH-TOCSY 1 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 1 6.8 '50 mM NaCl' atm K 2 283 1 6.8 '50 mM NaCl' atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 'All NMR samples were 1 mM RNA, and approximately 50 mM NaCl, 100% D2O' '100% D2O' 2 'All NMR samples were 1 mM RNA, and approximately 50 mM NaCl, 90% H2O/10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DMX Bruker 600 ? 2 DMX Bruker 750 ? 3 INOVA Varian 600 ? 4 INOVA Varian 800 ? 5 INOVA Varian 900 ? # _pdbx_nmr_ensemble.entry_id 1Z2J _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1Z2J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR ? ? 1 processing NMRPipe ? Delaglio 2 'data analysis' Sparky ? ? 3 'structure solution' CNS ? Brunger 4 refinement XPLOR-NIH ? Schwieters 5 # _exptl.entry_id 1Z2J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1Z2J _struct.title 'Solution structure of the HIV-1 frameshift inducing element' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z2J _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Stem-loop, purine bulge, tetraloop, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 4 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 4 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 5 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 5 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 7 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 7 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 8 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 8 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 9 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 9 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 9 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 10 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 10 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 12 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 12 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 12 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 13 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 13 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 13 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 14 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 14 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 14 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 15 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 15 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 16 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 16 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 16 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 16 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 17 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 17 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 17 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 20 N3 ? ? ? 1_555 A A 23 N6 ? ? A A 20 A A 23 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1Z2J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z2J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 G 2 2 2 G GUA A . n A 1 3 G 3 3 3 G GUA A . n A 1 4 A 4 4 4 A ADE A . n A 1 5 A 5 5 5 A ADE A . n A 1 6 G 6 6 6 G GUA A . n A 1 7 A 7 7 7 A ADE A . n A 1 8 U 8 8 8 U URI A . n A 1 9 C 9 9 9 C CYT A . n A 1 10 U 10 10 10 U URI A . n A 1 11 G 11 11 11 G GUA A . n A 1 12 G 12 12 12 G GUA A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 C 14 14 14 C CYT A . n A 1 15 U 15 15 15 U URI A . n A 1 16 U 16 16 16 U URI A . n A 1 17 C 17 17 17 C CYT A . n A 1 18 C 18 18 18 C CYT A . n A 1 19 C 19 19 19 C CYT A . n A 1 20 A 20 20 20 A ADE A . n A 1 21 C 21 21 21 C CYT A . n A 1 22 A 22 22 22 A ADE A . n A 1 23 A 23 23 23 A ADE A . n A 1 24 G 24 24 24 G GUA A . n A 1 25 G 25 25 25 G GUA A . n A 1 26 G 26 26 26 G GUA A . n A 1 27 A 27 27 27 A ADE A . n A 1 28 A 28 28 28 A ADE A . n A 1 29 G 29 29 29 G GUA A . n A 1 30 G 30 30 30 G GUA A . n A 1 31 C 31 31 31 C CYT A . n A 1 32 C 32 32 32 C CYT A . n A 1 33 A 33 33 33 A ADE A . n A 1 34 G 34 34 34 G GUA A . n A 1 35 G 35 35 35 G GUA A . n A 1 36 G 36 36 36 G GUA A . n A 1 37 A 37 37 37 A ADE A . n A 1 38 A 38 38 38 A ADE A . n A 1 39 U 39 39 39 U URI A . n A 1 40 C 40 40 40 C CYT A . n A 1 41 U 41 41 41 U URI A . n A 1 42 U 42 42 42 U URI A . n A 1 43 C 43 43 43 C CYT A . n A 1 44 C 44 44 44 C CYT A . n A 1 45 C 45 45 45 C CYT A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.39 2 2 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.41 3 2 "HO2'" A G 36 ? ? "O5'" A A 37 ? ? 1.44 4 2 "O2'" A U 8 ? ? "H5'" A C 9 ? ? 1.54 5 3 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.55 6 4 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.41 7 4 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.57 8 5 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.23 9 5 "HO2'" A C 21 ? ? OP2 A A 22 ? ? 1.53 10 5 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.59 11 6 "HO2'" A G 36 ? ? "O5'" A A 37 ? ? 1.52 12 7 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.39 13 8 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.48 14 8 "O2'" A U 8 ? ? "H5'" A C 9 ? ? 1.54 15 8 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.59 16 9 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.44 17 10 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.56 18 12 "O2'" A U 8 ? ? "H5'" A C 9 ? ? 1.44 19 14 "HO2'" A G 36 ? ? OP2 A A 37 ? ? 1.44 20 15 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.43 21 15 "O2'" A U 8 ? ? "H5'" A C 9 ? ? 1.49 22 16 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.45 23 17 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.28 24 17 "HO2'" A C 21 ? ? OP2 A A 22 ? ? 1.40 25 17 "HO2'" A G 36 ? ? "O5'" A A 37 ? ? 1.49 26 17 "O2'" A G 36 ? ? H8 A A 37 ? ? 1.59 27 19 "HO2'" A A 22 ? ? "O4'" A A 23 ? ? 1.39 28 19 "O2'" A U 8 ? ? "H5'" A C 9 ? ? 1.47 29 20 "H1'" A C 21 ? ? OP2 A A 22 ? ? 1.55 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 10 "C4'" A A 33 ? ? "C3'" A A 33 ? ? 1.457 1.521 -0.064 0.010 N 2 11 "C4'" A A 33 ? ? "C3'" A A 33 ? ? 1.459 1.521 -0.062 0.010 N 3 20 "C4'" A A 33 ? ? "C3'" A A 33 ? ? 1.450 1.521 -0.071 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.11 109.70 -4.59 0.70 N 2 2 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.15 109.70 -4.55 0.70 N 3 3 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.11 109.70 -4.59 0.70 N 4 3 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.38 109.70 -4.32 0.70 N 5 4 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 104.78 109.70 -4.92 0.70 N 6 5 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.14 109.70 -4.56 0.70 N 7 5 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.45 109.70 -4.25 0.70 N 8 5 "C1'" A C 31 ? ? "O4'" A C 31 ? ? "C4'" A C 31 ? ? 105.42 109.70 -4.28 0.70 N 9 6 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.36 109.70 -4.34 0.70 N 10 7 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 104.87 109.70 -4.83 0.70 N 11 7 "C1'" A C 31 ? ? "O4'" A C 31 ? ? "C4'" A C 31 ? ? 105.49 109.70 -4.21 0.70 N 12 8 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.28 109.70 -4.42 0.70 N 13 8 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.45 109.70 -4.25 0.70 N 14 9 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.12 109.70 -4.58 0.70 N 15 9 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.36 109.70 -4.34 0.70 N 16 9 "C1'" A C 31 ? ? "O4'" A C 31 ? ? "C4'" A C 31 ? ? 105.35 109.70 -4.35 0.70 N 17 10 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.06 109.70 -4.64 0.70 N 18 11 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.00 109.70 -4.70 0.70 N 19 12 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.13 109.70 -4.57 0.70 N 20 12 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.45 109.70 -4.25 0.70 N 21 13 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.41 109.70 -4.29 0.70 N 22 14 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 104.80 109.70 -4.90 0.70 N 23 15 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.44 109.70 -4.26 0.70 N 24 16 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.26 109.70 -4.44 0.70 N 25 17 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.05 109.70 -4.65 0.70 N 26 17 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.35 109.70 -4.35 0.70 N 27 18 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.25 109.70 -4.45 0.70 N 28 18 "C1'" A A 28 ? ? "O4'" A A 28 ? ? "C4'" A A 28 ? ? 105.20 109.70 -4.50 0.70 N 29 19 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 104.93 109.70 -4.77 0.70 N 30 20 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 105.09 109.70 -4.61 0.70 N 31 20 "C1'" A A 22 ? ? "O4'" A A 22 ? ? "C4'" A A 22 ? ? 104.71 109.70 -4.99 0.70 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Z2J 'double helix' 1Z2J 'a-form double helix' 1Z2J 'hairpin loop' 1Z2J 'bulge loop' 1Z2J 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 45 1_555 -0.703 -0.253 -0.084 -1.121 -8.535 -1.523 1 A_G1:C45_A A 1 ? A 45 ? 19 1 1 A G 2 1_555 A C 44 1_555 -0.133 -0.113 0.221 1.308 -11.360 -2.654 2 A_G2:C44_A A 2 ? A 44 ? 19 1 1 A G 3 1_555 A C 43 1_555 -0.447 -0.168 0.109 1.563 -8.904 -2.224 3 A_G3:C43_A A 3 ? A 43 ? 19 1 1 A A 4 1_555 A U 42 1_555 -0.473 -0.114 0.106 1.033 -4.439 -3.382 4 A_A4:U42_A A 4 ? A 42 ? 20 1 1 A A 5 1_555 A U 41 1_555 0.616 -0.007 -0.050 -0.561 -4.358 -2.759 5 A_A5:U41_A A 5 ? A 41 ? 20 1 1 A G 6 1_555 A C 40 1_555 -0.288 -0.114 -0.033 0.299 -9.257 -1.516 6 A_G6:C40_A A 6 ? A 40 ? 19 1 1 A A 7 1_555 A U 39 1_555 -0.630 -0.189 -0.055 -1.076 -5.048 -2.920 7 A_A7:U39_A A 7 ? A 39 ? 20 1 1 A U 8 1_555 A A 38 1_555 -0.004 -0.008 -0.221 9.395 0.932 -1.039 8 A_U8:A38_A A 8 ? A 38 ? 20 1 1 A C 9 1_555 A G 34 1_555 0.546 -0.197 0.047 -5.408 -6.588 -2.083 9 A_C9:G34_A A 9 ? A 34 ? 19 1 1 A U 10 1_555 A A 33 1_555 0.513 -0.168 -0.265 -3.881 0.525 -2.300 10 A_U10:A33_A A 10 ? A 33 ? 20 1 1 A G 11 1_555 A C 32 1_555 -1.046 -0.482 0.044 -0.692 -1.396 -3.678 11 A_G11:C32_A A 11 ? A 32 ? 19 1 1 A G 12 1_555 A C 31 1_555 0.623 -0.096 0.076 -4.997 -1.525 -0.958 12 A_G12:C31_A A 12 ? A 31 ? 19 1 1 A C 13 1_555 A G 30 1_555 0.353 -0.157 -0.487 5.819 -7.613 -1.021 13 A_C13:G30_A A 13 ? A 30 ? 19 1 1 A C 14 1_555 A G 29 1_555 0.062 -0.136 -0.685 8.665 -10.739 0.323 14 A_C14:G29_A A 14 ? A 29 ? 19 1 1 A U 15 1_555 A A 28 1_555 0.551 -0.437 -0.836 -6.993 13.334 -14.870 15 A_U15:A28_A A 15 ? A 28 ? 20 1 1 A U 16 1_555 A A 27 1_555 -0.405 0.037 -0.150 10.391 4.824 -2.991 16 A_U16:A27_A A 16 ? A 27 ? 20 1 1 A C 17 1_555 A G 26 1_555 0.080 -0.070 -0.240 2.785 1.722 -2.077 17 A_C17:G26_A A 17 ? A 26 ? 19 1 1 A C 18 1_555 A G 25 1_555 -0.273 -0.078 -0.328 -0.986 6.952 -2.747 18 A_C18:G25_A A 18 ? A 25 ? 19 1 1 A C 19 1_555 A G 24 1_555 0.511 -0.242 -0.270 7.029 14.268 -2.602 19 A_C19:G24_A A 19 ? A 24 ? 19 1 1 A A 20 1_555 A A 23 1_555 6.248 -4.606 -0.619 13.407 9.555 -12.177 20 A_A20:A23_A A 20 ? A 23 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 45 1_555 A G 2 1_555 A C 44 1_555 -0.537 -1.537 3.190 -3.350 12.673 30.686 -4.573 0.436 2.427 22.692 5.999 33.307 1 AA_G1G2:C44C45_AA A 1 ? A 45 ? A 2 ? A 44 ? 1 A G 2 1_555 A C 44 1_555 A G 3 1_555 A C 43 1_555 -0.147 -1.574 3.428 -2.411 7.650 28.848 -4.616 -0.210 2.925 14.993 4.726 29.919 2 AA_G2G3:C43C44_AA A 2 ? A 44 ? A 3 ? A 43 ? 1 A G 3 1_555 A C 43 1_555 A A 4 1_555 A U 42 1_555 -0.119 -1.452 3.532 -1.712 8.943 30.151 -4.381 -0.107 2.992 16.718 3.201 31.465 3 AA_G3A4:U42C43_AA A 3 ? A 43 ? A 4 ? A 42 ? 1 A A 4 1_555 A U 42 1_555 A A 5 1_555 A U 41 1_555 0.021 -1.262 3.653 0.562 10.532 34.627 -3.613 0.050 3.148 17.207 -0.918 36.150 4 AA_A4A5:U41U42_AA A 4 ? A 42 ? A 5 ? A 41 ? 1 A A 5 1_555 A U 41 1_555 A G 6 1_555 A C 40 1_555 0.022 -1.691 3.251 -0.372 15.973 25.880 -5.978 -0.105 1.906 32.067 0.746 30.343 5 AA_A5G6:C40U41_AA A 5 ? A 41 ? A 6 ? A 40 ? 1 A G 6 1_555 A C 40 1_555 A A 7 1_555 A U 39 1_555 0.056 -1.415 3.568 -2.134 6.315 28.548 -4.222 -0.591 3.176 12.591 4.254 29.300 6 AA_G6A7:U39C40_AA A 6 ? A 40 ? A 7 ? A 39 ? 1 A A 7 1_555 A U 39 1_555 A U 8 1_555 A A 38 1_555 -0.043 -1.101 3.233 -0.271 17.410 31.620 -4.039 0.035 2.333 29.334 0.456 35.989 7 AA_A7U8:A38U39_AA A 7 ? A 39 ? A 8 ? A 38 ? 1 A C 9 1_555 A G 34 1_555 A U 10 1_555 A A 33 1_555 -0.388 -1.473 3.646 1.027 4.579 29.409 -3.899 0.986 3.368 8.948 -2.007 29.773 8 AA_C9U10:A33G34_AA A 9 ? A 34 ? A 10 ? A 33 ? 1 A U 10 1_555 A A 33 1_555 A G 11 1_555 A C 32 1_555 -0.142 -1.855 3.218 -3.675 11.467 20.348 -7.764 -0.688 1.909 29.370 9.413 23.611 9 AA_U10G11:C32A33_AA A 10 ? A 33 ? A 11 ? A 32 ? 1 A G 11 1_555 A C 32 1_555 A G 12 1_555 A C 31 1_555 0.065 -1.450 3.530 -1.675 13.497 41.820 -3.242 -0.249 2.943 18.335 2.276 43.882 10 AA_G11G12:C31C32_AA A 11 ? A 32 ? A 12 ? A 31 ? 1 A G 12 1_555 A C 31 1_555 A C 13 1_555 A G 30 1_555 -0.106 -1.601 2.933 4.933 5.884 28.903 -4.138 1.073 2.513 11.533 -9.670 29.884 11 AA_G12C13:G30C31_AA A 12 ? A 31 ? A 13 ? A 30 ? 1 A C 13 1_555 A G 30 1_555 A C 14 1_555 A G 29 1_555 -0.012 -1.296 3.367 2.647 4.791 28.966 -3.569 0.588 3.103 9.471 -5.233 29.468 12 AA_C13C14:G29G30_AA A 13 ? A 30 ? A 14 ? A 29 ? 1 A C 14 1_555 A G 29 1_555 A U 15 1_555 A A 28 1_555 -1.014 -1.235 4.567 0.012 9.230 32.843 -4.085 1.732 4.081 15.935 -0.020 34.081 13 AA_C14U15:A28G29_AA A 14 ? A 29 ? A 15 ? A 28 ? 1 A U 15 1_555 A A 28 1_555 A U 16 1_555 A A 27 1_555 0.800 -1.670 2.875 -2.348 9.127 21.260 -6.552 -2.605 1.906 23.318 5.998 23.233 14 AA_U15U16:A27A28_AA A 15 ? A 28 ? A 16 ? A 27 ? 1 A U 16 1_555 A A 27 1_555 A C 17 1_555 A G 26 1_555 -0.103 -1.673 3.866 0.131 18.309 31.402 -5.403 0.186 2.540 30.773 -0.221 36.234 15 AA_U16C17:G26A27_AA A 16 ? A 27 ? A 17 ? A 26 ? 1 A C 17 1_555 A G 26 1_555 A C 18 1_555 A G 25 1_555 -0.126 -1.786 3.641 0.015 18.115 25.751 -6.535 0.235 1.985 35.579 -0.030 31.396 16 AA_C17C18:G25G26_AA A 17 ? A 26 ? A 18 ? A 25 ? 1 A C 18 1_555 A G 25 1_555 A C 19 1_555 A G 24 1_555 -0.073 -1.593 3.295 -1.970 18.968 28.717 -5.284 -0.145 1.910 33.929 3.525 34.361 17 AA_C18C19:G24G25_AA A 18 ? A 25 ? A 19 ? A 24 ? 1 A C 19 1_555 A G 24 1_555 A A 20 1_555 A A 23 1_555 -0.911 -0.540 3.396 5.606 16.704 50.126 -1.687 1.385 2.978 19.052 -6.394 52.944 18 AA_C19A20:A23G24_AA A 19 ? A 24 ? A 20 ? A 23 ? #