data_1Z3E # _entry.id 1Z3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Z3E RCSB RCSB032247 WWPDB D_1000032247 # _pdbx_database_status.entry_id 1Z3E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-03-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Newberry, K.J.' 1 'Nakano, S.' 2 'Zuber, P.' 3 'Brennan, R.G.' 4 # _citation.id primary _citation.title ;Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the {alpha} C-terminal domain of RNA polymerase ; _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 15839 _citation.page_last 15844 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16249335 _citation.pdbx_database_id_DOI 10.1073/pnas.0506592102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Newberry, K.J.' 1 primary 'Nakano, S.' 2 primary 'Zuber, P.' 3 primary 'Brennan, R.G.' 4 # _cell.length_a 96.440 _cell.length_b 96.440 _cell.length_c 57.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1Z3E _cell.pdbx_unique_axis ? _cell.Z_PDB 9 # _symmetry.space_group_name_H-M 'H 3' _symmetry.entry_id 1Z3E _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 146 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Regulatory protein spx' 15690.040 1 ? ? 'transcription regulator' ? 2 polymer man 'DNA-directed RNA polymerase alpha chain' 8381.699 1 2.7.7.6 ? 'c-terminal domain of RNA polymerase alpha subunit' ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RNAP alpha subunit, Transcriptase alpha chain, RNA polymerase alpha subunit' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HMVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDL YRLINEHPGLLRRPIIIDEKRLQVGYNEDEIRRFLPRKVRSFQLREAQRLAN ; ;HMVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDL YRLINEHPGLLRRPIIIDEKRLQVGYNEDEIRRFLPRKVRSFQLREAQRLAN ; A ? 2 'polypeptide(L)' no no MEKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDDG MEKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDDG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 VAL n 1 4 THR n 1 5 LEU n 1 6 TYR n 1 7 THR n 1 8 SER n 1 9 PRO n 1 10 SER n 1 11 CYS n 1 12 THR n 1 13 SER n 1 14 CYS n 1 15 ARG n 1 16 LYS n 1 17 ALA n 1 18 ARG n 1 19 ALA n 1 20 TRP n 1 21 LEU n 1 22 GLU n 1 23 GLU n 1 24 HIS n 1 25 GLU n 1 26 ILE n 1 27 PRO n 1 28 PHE n 1 29 VAL n 1 30 GLU n 1 31 ARG n 1 32 ASN n 1 33 ILE n 1 34 PHE n 1 35 SER n 1 36 GLU n 1 37 PRO n 1 38 LEU n 1 39 SER n 1 40 ILE n 1 41 ASP n 1 42 GLU n 1 43 ILE n 1 44 LYS n 1 45 GLN n 1 46 ILE n 1 47 LEU n 1 48 ARG n 1 49 MET n 1 50 THR n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 THR n 1 55 ASP n 1 56 GLU n 1 57 ILE n 1 58 ILE n 1 59 SER n 1 60 THR n 1 61 ARG n 1 62 SER n 1 63 LYS n 1 64 VAL n 1 65 PHE n 1 66 GLN n 1 67 LYS n 1 68 LEU n 1 69 ASN n 1 70 VAL n 1 71 ASN n 1 72 VAL n 1 73 GLU n 1 74 SER n 1 75 MET n 1 76 PRO n 1 77 LEU n 1 78 GLN n 1 79 ASP n 1 80 LEU n 1 81 TYR n 1 82 ARG n 1 83 LEU n 1 84 ILE n 1 85 ASN n 1 86 GLU n 1 87 HIS n 1 88 PRO n 1 89 GLY n 1 90 LEU n 1 91 LEU n 1 92 ARG n 1 93 ARG n 1 94 PRO n 1 95 ILE n 1 96 ILE n 1 97 ILE n 1 98 ASP n 1 99 GLU n 1 100 LYS n 1 101 ARG n 1 102 LEU n 1 103 GLN n 1 104 VAL n 1 105 GLY n 1 106 TYR n 1 107 ASN n 1 108 GLU n 1 109 ASP n 1 110 GLU n 1 111 ILE n 1 112 ARG n 1 113 ARG n 1 114 PHE n 1 115 LEU n 1 116 PRO n 1 117 ARG n 1 118 LYS n 1 119 VAL n 1 120 ARG n 1 121 SER n 1 122 PHE n 1 123 GLN n 1 124 LEU n 1 125 ARG n 1 126 GLU n 1 127 ALA n 1 128 GLN n 1 129 ARG n 1 130 LEU n 1 131 ALA n 1 132 ASN n 2 1 MET n 2 2 GLU n 2 3 LYS n 2 4 GLU n 2 5 LYS n 2 6 VAL n 2 7 LEU n 2 8 GLU n 2 9 MET n 2 10 THR n 2 11 ILE n 2 12 GLU n 2 13 GLU n 2 14 LEU n 2 15 ASP n 2 16 LEU n 2 17 SER n 2 18 VAL n 2 19 ARG n 2 20 SER n 2 21 TYR n 2 22 ASN n 2 23 CYS n 2 24 LEU n 2 25 LYS n 2 26 ARG n 2 27 ALA n 2 28 GLY n 2 29 ILE n 2 30 ASN n 2 31 THR n 2 32 VAL n 2 33 GLN n 2 34 GLU n 2 35 LEU n 2 36 ALA n 2 37 ASN n 2 38 LYS n 2 39 THR n 2 40 GLU n 2 41 GLU n 2 42 ASP n 2 43 MET n 2 44 MET n 2 45 LYS n 2 46 VAL n 2 47 ARG n 2 48 ASN n 2 49 LEU n 2 50 GLY n 2 51 ARG n 2 52 LYS n 2 53 SER n 2 54 LEU n 2 55 GLU n 2 56 GLU n 2 57 VAL n 2 58 LYS n 2 59 ALA n 2 60 LYS n 2 61 LEU n 2 62 GLU n 2 63 GLU n 2 64 LEU n 2 65 GLY n 2 66 LEU n 2 67 GLY n 2 68 LEU n 2 69 ARG n 2 70 LYS n 2 71 ASP n 2 72 ASP n 2 73 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Bacillus spxA ? ? ? ? ? ? 'Bacillus subtilis' 1423 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 Escherichia ? ? 'Escherichia coli' ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pSN17 ? ? 2 1 sample ? ? ? ? Bacillus rpoA ? ? ? ? ? ? 'Bacillus subtilis' 1423 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 Escherichia ? ? 'Escherichia coli' ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pSN106 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPX_BACSU O31602 1 ;MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLY RLINEHPGLLRRPIIIDEKRLQVGYNEDEIRRFLPRKVRSFQLREAQRLAN ; 1 ? 2 UNP RPOA_BACSU P20429 2 KEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD 245 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Z3E A 2 ? 132 ? O31602 1 ? 131 ? 1 131 2 2 1Z3E B 3 ? 72 ? P20429 245 ? 314 ? 245 314 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z3E HIS A 1 ? UNP O31602 ? ? 'CLONING ARTIFACT' 0 1 2 1Z3E MET B 1 ? UNP P20429 ? ? 'CLONING ARTIFACT' 243 2 2 1Z3E GLU B 2 ? UNP P20429 ? ? 'CLONING ARTIFACT' 244 3 2 1Z3E GLY B 73 ? UNP P20429 ? ? 'CLONING ARTIFACT' 315 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z3E _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'lithium sulfate, ammonium sulfate, sodium citrate, pH 5.6, VAPOR DIFFUSION, temperature 273K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-10-20 _diffrn_detector.details ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' 'double crystal Si' M x-ray 2 1 MAD 'double crystal Si' M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.00003 1.0 2 0.9794 1.0 3 0.9796 1.0 4 0.9952 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ? 1.00003 ALS 8.2.1 2 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ? '0.9794, 0.9796, 0.9952' ALS 8.2.1 # _reflns.entry_id 1Z3E _reflns.d_resolution_low 33.71 _reflns.d_resolution_high 1.50 _reflns.number_obs 31461 _reflns.percent_possible_obs 99.200 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 2.800 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 12.500 _reflns.pdbx_Rsym_value 0.042 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all 31461 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 1.58 _reflns_shell.d_res_high 1.50 _reflns_shell.number_measured_obs 4550 _reflns_shell.percent_possible_obs 98.500 _reflns_shell.Rmerge_I_obs 0.311 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 2.600 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 2.500 _reflns_shell.pdbx_Rsym_value 0.311 _reflns_shell.percent_possible_all 98.5 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.200 _refine.ls_number_reflns_obs 31435 _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.22 _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 3108 _refine.B_iso_mean 17.484 _refine.solvent_model_param_bsol 52.035 _refine.aniso_B[1][1] -1.132 _refine.aniso_B[2][2] -1.132 _refine.aniso_B[3][3] 2.265 _refine.aniso_B[1][2] -1.107 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.entry_id 1Z3E _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 31689 _refine.ls_R_factor_all 0.196 _refine.ls_R_factor_obs 0.196 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1509 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1672 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.006 ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? 1.272 0.000 ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 2.129 0.000 1.500 'X-RAY DIFFRACTION' ? c_scbond_it ? 4.294 0.000 2.000 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.750 0.000 2.000 'X-RAY DIFFRACTION' ? c_scangle_it ? 5.790 0.000 2.500 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.55 _refine_ls_shell.number_reflns_obs 2820 _refine_ls_shell.number_reflns_R_free 295 _refine_ls_shell.R_factor_R_work 0.2547 _refine_ls_shell.R_factor_R_free 0.2719 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_obs 99.2 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 1Z3E _struct.title 'Crystal Structure of Spx in Complex with the C-terminal Domain of the RNA Polymerase Alpha Subunit' _struct.pdbx_descriptor 'Regulatory protein spx, DNA-directed RNA polymerase alpha chain (E.C.2.7.7.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z3E _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'bacterial transcription regulation, disulfide stress, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 11 ? HIS A 24 ? CYS A 10 HIS A 23 1 ? 14 HELX_P HELX_P2 2 SER A 39 ? MET A 49 ? SER A 38 MET A 48 1 ? 11 HELX_P HELX_P3 3 GLY A 53 ? ILE A 57 ? GLY A 52 ILE A 56 5 ? 5 HELX_P HELX_P4 4 SER A 62 ? ASN A 69 ? SER A 61 ASN A 68 1 ? 8 HELX_P HELX_P5 5 ASN A 71 ? MET A 75 ? ASN A 70 MET A 74 5 ? 5 HELX_P HELX_P6 6 PRO A 76 ? HIS A 87 ? PRO A 75 HIS A 86 1 ? 12 HELX_P HELX_P7 7 PRO A 88 ? LEU A 91 ? PRO A 87 LEU A 90 5 ? 4 HELX_P HELX_P8 8 ASP A 109 ? LEU A 115 ? ASP A 108 LEU A 114 5 ? 7 HELX_P HELX_P9 9 LYS B 3 ? GLU B 8 ? LYS B 245 GLU B 250 1 ? 6 HELX_P HELX_P10 10 THR B 10 ? LEU B 14 ? THR B 252 LEU B 256 5 ? 5 HELX_P HELX_P11 11 SER B 17 ? ALA B 27 ? SER B 259 ALA B 269 1 ? 11 HELX_P HELX_P12 12 THR B 31 ? ASN B 37 ? THR B 273 ASN B 279 1 ? 7 HELX_P HELX_P13 13 THR B 39 ? LYS B 45 ? THR B 281 LYS B 287 1 ? 7 HELX_P HELX_P14 14 GLY B 50 ? LEU B 64 ? GLY B 292 LEU B 306 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 11 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 14 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 10 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 13 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 92 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 93 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.84 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 28 ? ASN A 32 ? PHE A 27 ASN A 31 A 2 VAL A 3 ? THR A 7 ? VAL A 2 THR A 6 A 3 ILE A 95 ? ILE A 97 ? ILE A 94 ILE A 96 A 4 LEU A 102 ? VAL A 104 ? LEU A 101 VAL A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 29 ? O VAL A 28 N LEU A 5 ? N LEU A 4 A 2 3 N TYR A 6 ? N TYR A 5 O ILE A 95 ? O ILE A 94 A 3 4 N ILE A 96 ? N ILE A 95 O GLN A 103 ? O GLN A 102 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 400' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 401' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 403' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 B 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS A 1 ? HIS A 0 . ? 1_555 ? 2 AC1 10 MET A 2 ? MET A 1 . ? 1_555 ? 3 AC1 10 VAL A 64 ? VAL A 63 . ? 9_554 ? 4 AC1 10 GLU A 86 ? GLU A 85 . ? 9_554 ? 5 AC1 10 HIS A 87 ? HIS A 86 . ? 9_554 ? 6 AC1 10 ASP A 98 ? ASP A 97 . ? 1_555 ? 7 AC1 10 GLU A 99 ? GLU A 98 . ? 1_555 ? 8 AC1 10 HOH G . ? HOH A 409 . ? 9_554 ? 9 AC1 10 HOH G . ? HOH A 410 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH A 449 . ? 1_555 ? 11 AC2 5 CYS A 11 ? CYS A 10 . ? 1_555 ? 12 AC2 5 THR A 12 ? THR A 11 . ? 1_555 ? 13 AC2 5 SER A 13 ? SER A 12 . ? 1_555 ? 14 AC2 5 ARG A 93 ? ARG A 92 . ? 1_555 ? 15 AC2 5 SO4 E . ? SO4 A 403 . ? 1_555 ? 16 AC3 7 SER A 59 ? SER A 58 . ? 1_555 ? 17 AC3 7 ARG A 92 ? ARG A 91 . ? 1_555 ? 18 AC3 7 ARG A 93 ? ARG A 92 . ? 1_555 ? 19 AC3 7 SO4 D . ? SO4 A 401 . ? 1_555 ? 20 AC3 7 HOH G . ? HOH A 442 . ? 1_555 ? 21 AC3 7 HOH G . ? HOH A 471 . ? 1_555 ? 22 AC3 7 HOH G . ? HOH A 473 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH B 131 . ? 6_455 ? 24 AC4 6 LYS B 3 ? LYS B 245 . ? 6_455 ? 25 AC4 6 LEU B 7 ? LEU B 249 . ? 6_455 ? 26 AC4 6 GLY B 50 ? GLY B 292 . ? 1_555 ? 27 AC4 6 ARG B 51 ? ARG B 293 . ? 1_555 ? 28 AC4 6 LYS B 52 ? LYS B 294 . ? 1_555 ? # _atom_sites.entry_id 1Z3E _atom_sites.fract_transf_matrix[1][1] 0.010369 _atom_sites.fract_transf_matrix[1][2] 0.005987 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011973 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017513 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 0 0 HIS HIS A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 VAL 3 2 2 VAL VAL A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 SER 8 7 7 SER SER A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 CYS 11 10 10 CYS CYS A . n A 1 12 THR 12 11 11 THR THR A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 CYS 14 13 13 CYS CYS A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 TRP 20 19 19 TRP TRP A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 HIS 24 23 23 HIS HIS A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 PHE 28 27 27 PHE PHE A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 MET 49 48 48 MET MET A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 ARG 61 60 60 ARG ARG A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 MET 75 74 74 MET MET A . n A 1 76 PRO 76 75 75 PRO PRO A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 ASN 85 84 84 ASN ASN A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 HIS 87 86 86 HIS HIS A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 GLY 89 88 88 GLY GLY A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ARG 92 91 91 ARG ARG A . n A 1 93 ARG 93 92 92 ARG ARG A . n A 1 94 PRO 94 93 93 PRO PRO A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 GLN 103 102 102 GLN GLN A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 VAL 119 118 118 VAL VAL A . n A 1 120 ARG 120 119 ? ? ? A . n A 1 121 SER 121 120 ? ? ? A . n A 1 122 PHE 122 121 ? ? ? A . n A 1 123 GLN 123 122 ? ? ? A . n A 1 124 LEU 124 123 ? ? ? A . n A 1 125 ARG 125 124 ? ? ? A . n A 1 126 GLU 126 125 ? ? ? A . n A 1 127 ALA 127 126 ? ? ? A . n A 1 128 GLN 128 127 ? ? ? A . n A 1 129 ARG 129 128 ? ? ? A . n A 1 130 LEU 130 129 ? ? ? A . n A 1 131 ALA 131 130 ? ? ? A . n A 1 132 ASN 132 131 ? ? ? A . n B 2 1 MET 1 243 ? ? ? B . n B 2 2 GLU 2 244 ? ? ? B . n B 2 3 LYS 3 245 245 LYS LYS B . n B 2 4 GLU 4 246 246 GLU GLU B . n B 2 5 LYS 5 247 247 LYS LYS B . n B 2 6 VAL 6 248 248 VAL VAL B . n B 2 7 LEU 7 249 249 LEU LEU B . n B 2 8 GLU 8 250 250 GLU GLU B . n B 2 9 MET 9 251 251 MET MET B . n B 2 10 THR 10 252 252 THR THR B . n B 2 11 ILE 11 253 253 ILE ILE B . n B 2 12 GLU 12 254 254 GLU GLU B . n B 2 13 GLU 13 255 255 GLU GLU B . n B 2 14 LEU 14 256 256 LEU LEU B . n B 2 15 ASP 15 257 257 ASP ASP B . n B 2 16 LEU 16 258 258 LEU LEU B . n B 2 17 SER 17 259 259 SER SER B . n B 2 18 VAL 18 260 260 VAL VAL B . n B 2 19 ARG 19 261 261 ARG ARG B . n B 2 20 SER 20 262 262 SER SER B . n B 2 21 TYR 21 263 263 TYR TYR B . n B 2 22 ASN 22 264 264 ASN ASN B . n B 2 23 CYS 23 265 265 CYS CYS B . n B 2 24 LEU 24 266 266 LEU LEU B . n B 2 25 LYS 25 267 267 LYS LYS B . n B 2 26 ARG 26 268 268 ARG ARG B . n B 2 27 ALA 27 269 269 ALA ALA B . n B 2 28 GLY 28 270 270 GLY GLY B . n B 2 29 ILE 29 271 271 ILE ILE B . n B 2 30 ASN 30 272 272 ASN ASN B . n B 2 31 THR 31 273 273 THR THR B . n B 2 32 VAL 32 274 274 VAL VAL B . n B 2 33 GLN 33 275 275 GLN GLN B . n B 2 34 GLU 34 276 276 GLU GLU B . n B 2 35 LEU 35 277 277 LEU LEU B . n B 2 36 ALA 36 278 278 ALA ALA B . n B 2 37 ASN 37 279 279 ASN ASN B . n B 2 38 LYS 38 280 280 LYS LYS B . n B 2 39 THR 39 281 281 THR THR B . n B 2 40 GLU 40 282 282 GLU GLU B . n B 2 41 GLU 41 283 283 GLU GLU B . n B 2 42 ASP 42 284 284 ASP ASP B . n B 2 43 MET 43 285 285 MET MET B . n B 2 44 MET 44 286 286 MET MET B . n B 2 45 LYS 45 287 287 LYS LYS B . n B 2 46 VAL 46 288 288 VAL VAL B . n B 2 47 ARG 47 289 289 ARG ARG B . n B 2 48 ASN 48 290 290 ASN ASN B . n B 2 49 LEU 49 291 291 LEU LEU B . n B 2 50 GLY 50 292 292 GLY GLY B . n B 2 51 ARG 51 293 293 ARG ARG B . n B 2 52 LYS 52 294 294 LYS LYS B . n B 2 53 SER 53 295 295 SER SER B . n B 2 54 LEU 54 296 296 LEU LEU B . n B 2 55 GLU 55 297 297 GLU GLU B . n B 2 56 GLU 56 298 298 GLU GLU B . n B 2 57 VAL 57 299 299 VAL VAL B . n B 2 58 LYS 58 300 300 LYS LYS B . n B 2 59 ALA 59 301 301 ALA ALA B . n B 2 60 LYS 60 302 302 LYS LYS B . n B 2 61 LEU 61 303 303 LEU LEU B . n B 2 62 GLU 62 304 304 GLU GLU B . n B 2 63 GLU 63 305 305 GLU GLU B . n B 2 64 LEU 64 306 306 LEU LEU B . n B 2 65 GLY 65 307 307 GLY GLY B . n B 2 66 LEU 66 308 308 LEU LEU B . n B 2 67 GLY 67 309 309 GLY GLY B . n B 2 68 LEU 68 310 310 LEU LEU B . n B 2 69 ARG 69 311 311 ARG ARG B . n B 2 70 LYS 70 312 ? ? ? B . n B 2 71 ASP 71 313 ? ? ? B . n B 2 72 ASP 72 314 ? ? ? B . n B 2 73 GLY 73 315 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 400 400 SO4 SO4 A . D 3 SO4 1 401 401 SO4 SO4 A . E 3 SO4 1 403 403 SO4 SO4 A . F 3 SO4 1 402 402 SO4 SO4 B . G 4 HOH 1 404 2 HOH HOH A . G 4 HOH 2 405 3 HOH HOH A . G 4 HOH 3 406 5 HOH HOH A . G 4 HOH 4 407 6 HOH HOH A . G 4 HOH 5 408 7 HOH HOH A . G 4 HOH 6 409 8 HOH HOH A . G 4 HOH 7 410 9 HOH HOH A . G 4 HOH 8 411 10 HOH HOH A . G 4 HOH 9 412 11 HOH HOH A . G 4 HOH 10 413 12 HOH HOH A . G 4 HOH 11 414 13 HOH HOH A . G 4 HOH 12 415 14 HOH HOH A . G 4 HOH 13 416 16 HOH HOH A . G 4 HOH 14 417 17 HOH HOH A . G 4 HOH 15 418 18 HOH HOH A . G 4 HOH 16 419 19 HOH HOH A . G 4 HOH 17 420 20 HOH HOH A . G 4 HOH 18 421 21 HOH HOH A . G 4 HOH 19 422 23 HOH HOH A . G 4 HOH 20 423 26 HOH HOH A . G 4 HOH 21 424 27 HOH HOH A . G 4 HOH 22 425 28 HOH HOH A . G 4 HOH 23 426 29 HOH HOH A . G 4 HOH 24 427 30 HOH HOH A . G 4 HOH 25 428 31 HOH HOH A . G 4 HOH 26 429 33 HOH HOH A . G 4 HOH 27 430 34 HOH HOH A . G 4 HOH 28 431 38 HOH HOH A . G 4 HOH 29 432 39 HOH HOH A . G 4 HOH 30 433 41 HOH HOH A . G 4 HOH 31 434 42 HOH HOH A . G 4 HOH 32 435 43 HOH HOH A . G 4 HOH 33 436 44 HOH HOH A . G 4 HOH 34 437 46 HOH HOH A . G 4 HOH 35 438 47 HOH HOH A . G 4 HOH 36 439 49 HOH HOH A . G 4 HOH 37 440 50 HOH HOH A . G 4 HOH 38 441 51 HOH HOH A . G 4 HOH 39 442 52 HOH HOH A . G 4 HOH 40 443 53 HOH HOH A . G 4 HOH 41 444 54 HOH HOH A . G 4 HOH 42 445 55 HOH HOH A . G 4 HOH 43 446 56 HOH HOH A . G 4 HOH 44 447 57 HOH HOH A . G 4 HOH 45 448 58 HOH HOH A . G 4 HOH 46 449 59 HOH HOH A . G 4 HOH 47 450 60 HOH HOH A . G 4 HOH 48 451 61 HOH HOH A . G 4 HOH 49 452 64 HOH HOH A . G 4 HOH 50 453 65 HOH HOH A . G 4 HOH 51 454 66 HOH HOH A . G 4 HOH 52 455 69 HOH HOH A . G 4 HOH 53 456 70 HOH HOH A . G 4 HOH 54 457 72 HOH HOH A . G 4 HOH 55 458 74 HOH HOH A . G 4 HOH 56 459 81 HOH HOH A . G 4 HOH 57 460 83 HOH HOH A . G 4 HOH 58 461 85 HOH HOH A . G 4 HOH 59 462 86 HOH HOH A . G 4 HOH 60 463 87 HOH HOH A . G 4 HOH 61 464 88 HOH HOH A . G 4 HOH 62 465 89 HOH HOH A . G 4 HOH 63 466 90 HOH HOH A . G 4 HOH 64 467 93 HOH HOH A . G 4 HOH 65 468 94 HOH HOH A . G 4 HOH 66 469 97 HOH HOH A . G 4 HOH 67 470 99 HOH HOH A . G 4 HOH 68 471 100 HOH HOH A . G 4 HOH 69 472 101 HOH HOH A . G 4 HOH 70 473 102 HOH HOH A . G 4 HOH 71 474 103 HOH HOH A . G 4 HOH 72 475 104 HOH HOH A . G 4 HOH 73 476 105 HOH HOH A . G 4 HOH 74 477 106 HOH HOH A . G 4 HOH 75 478 108 HOH HOH A . G 4 HOH 76 479 109 HOH HOH A . G 4 HOH 77 480 110 HOH HOH A . G 4 HOH 78 481 111 HOH HOH A . G 4 HOH 79 482 113 HOH HOH A . G 4 HOH 80 483 114 HOH HOH A . G 4 HOH 81 484 115 HOH HOH A . G 4 HOH 82 485 118 HOH HOH A . G 4 HOH 83 486 119 HOH HOH A . G 4 HOH 84 487 122 HOH HOH A . G 4 HOH 85 488 124 HOH HOH A . G 4 HOH 86 489 126 HOH HOH A . G 4 HOH 87 490 127 HOH HOH A . G 4 HOH 88 491 128 HOH HOH A . G 4 HOH 89 492 132 HOH HOH A . G 4 HOH 90 493 133 HOH HOH A . G 4 HOH 91 494 134 HOH HOH A . G 4 HOH 92 495 135 HOH HOH A . G 4 HOH 93 496 136 HOH HOH A . G 4 HOH 94 497 137 HOH HOH A . G 4 HOH 95 498 138 HOH HOH A . G 4 HOH 96 499 139 HOH HOH A . G 4 HOH 97 500 140 HOH HOH A . G 4 HOH 98 501 141 HOH HOH A . G 4 HOH 99 502 142 HOH HOH A . H 4 HOH 1 1 1 HOH HOH B . H 4 HOH 2 4 4 HOH HOH B . H 4 HOH 3 15 15 HOH HOH B . H 4 HOH 4 22 22 HOH HOH B . H 4 HOH 5 24 24 HOH HOH B . H 4 HOH 6 25 25 HOH HOH B . H 4 HOH 7 32 32 HOH HOH B . H 4 HOH 8 35 35 HOH HOH B . H 4 HOH 9 36 36 HOH HOH B . H 4 HOH 10 37 37 HOH HOH B . H 4 HOH 11 40 40 HOH HOH B . H 4 HOH 12 45 45 HOH HOH B . H 4 HOH 13 48 48 HOH HOH B . H 4 HOH 14 62 62 HOH HOH B . H 4 HOH 15 63 63 HOH HOH B . H 4 HOH 16 67 67 HOH HOH B . H 4 HOH 17 68 68 HOH HOH B . H 4 HOH 18 71 71 HOH HOH B . H 4 HOH 19 73 73 HOH HOH B . H 4 HOH 20 75 75 HOH HOH B . H 4 HOH 21 76 76 HOH HOH B . H 4 HOH 22 77 77 HOH HOH B . H 4 HOH 23 78 78 HOH HOH B . H 4 HOH 24 79 79 HOH HOH B . H 4 HOH 25 80 80 HOH HOH B . H 4 HOH 26 82 82 HOH HOH B . H 4 HOH 27 84 84 HOH HOH B . H 4 HOH 28 91 91 HOH HOH B . H 4 HOH 29 92 92 HOH HOH B . H 4 HOH 30 95 95 HOH HOH B . H 4 HOH 31 96 96 HOH HOH B . H 4 HOH 32 98 98 HOH HOH B . H 4 HOH 33 107 107 HOH HOH B . H 4 HOH 34 112 112 HOH HOH B . H 4 HOH 35 116 116 HOH HOH B . H 4 HOH 36 117 117 HOH HOH B . H 4 HOH 37 120 120 HOH HOH B . H 4 HOH 38 121 121 HOH HOH B . H 4 HOH 39 123 123 HOH HOH B . H 4 HOH 40 125 125 HOH HOH B . H 4 HOH 41 129 129 HOH HOH B . H 4 HOH 42 130 130 HOH HOH B . H 4 HOH 43 131 131 HOH HOH B . H 4 HOH 44 143 143 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.classification' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? program 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 2 PDB_EXTRACT 1.600 'Jan. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 60 ? CG ? A ARG 61 CG 2 1 Y 1 A ARG 60 ? CD ? A ARG 61 CD 3 1 Y 1 A ARG 60 ? NE ? A ARG 61 NE 4 1 Y 1 A ARG 60 ? CZ ? A ARG 61 CZ 5 1 Y 1 A ARG 60 ? NH1 ? A ARG 61 NH1 6 1 Y 1 A ARG 60 ? NH2 ? A ARG 61 NH2 7 1 Y 1 A LYS 62 ? CG ? A LYS 63 CG 8 1 Y 1 A LYS 62 ? CD ? A LYS 63 CD 9 1 Y 1 A LYS 62 ? CE ? A LYS 63 CE 10 1 Y 1 A LYS 62 ? NZ ? A LYS 63 NZ 11 1 Y 1 B LYS 247 ? CG ? B LYS 5 CG 12 1 Y 1 B LYS 247 ? CD ? B LYS 5 CD 13 1 Y 1 B LYS 247 ? CE ? B LYS 5 CE 14 1 Y 1 B LYS 247 ? NZ ? B LYS 5 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 119 ? A ARG 120 2 1 Y 1 A SER 120 ? A SER 121 3 1 Y 1 A PHE 121 ? A PHE 122 4 1 Y 1 A GLN 122 ? A GLN 123 5 1 Y 1 A LEU 123 ? A LEU 124 6 1 Y 1 A ARG 124 ? A ARG 125 7 1 Y 1 A GLU 125 ? A GLU 126 8 1 Y 1 A ALA 126 ? A ALA 127 9 1 Y 1 A GLN 127 ? A GLN 128 10 1 Y 1 A ARG 128 ? A ARG 129 11 1 Y 1 A LEU 129 ? A LEU 130 12 1 Y 1 A ALA 130 ? A ALA 131 13 1 Y 1 A ASN 131 ? A ASN 132 14 1 Y 1 B MET 243 ? B MET 1 15 1 Y 1 B GLU 244 ? B GLU 2 16 1 Y 1 B LYS 312 ? B LYS 70 17 1 Y 1 B ASP 313 ? B ASP 71 18 1 Y 1 B ASP 314 ? B ASP 72 19 1 Y 1 B GLY 315 ? B GLY 73 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #