HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-MAR-05 1Z3K TITLE STRUCTURAL INSIGHT INTO THE BINDING DIVERSITY BETWEEN THE TYR- TITLE 2 PHOSPHORYLATED HUMAN EPHRINBS AND NCK2 SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 2, SH2/SH3 ADAPTOR PROTEIN NCK-BETA, COMPND 6 NCK-2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NCK2, SH2 DOMAIN, EPH RECEPTOR-EPHRIN MEDIATED SIGNALING, STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.RAN,J.SONG REVDAT 4 02-MAR-22 1Z3K 1 REMARK REVDAT 3 24-FEB-09 1Z3K 1 VERSN REVDAT 2 21-JUN-05 1Z3K 1 JRNL REVDAT 1 29-MAR-05 1Z3K 0 JRNL AUTH X.RAN,J.SONG JRNL TITL STRUCTURAL INSIGHT INTO THE BINDING DIVERSITY BETWEEN THE JRNL TITL 2 TYR-PHOSPHORYLATED HUMAN EPHRINBS AND NCK2 SH2 DOMAIN. JRNL REF J.BIOL.CHEM. V. 280 19205 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15764601 JRNL DOI 10.1074/JBC.M500330200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z3K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032253. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM NCK2 SH2 DOMAIN U-15N,13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES ACCEPTED BY CNS REMARK 210 PROGRAM WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 17 H ARG A 20 1.56 REMARK 500 O THR A 9 H HIS A 11 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 169.13 177.53 REMARK 500 1 ARG A 10 -55.16 68.82 REMARK 500 1 GLU A 19 -33.51 -39.50 REMARK 500 1 ARG A 20 70.25 85.55 REMARK 500 1 GLU A 23 -173.99 47.76 REMARK 500 1 SER A 45 81.15 -60.96 REMARK 500 1 ASP A 57 57.64 32.33 REMARK 500 1 GLN A 64 43.88 -140.17 REMARK 500 1 MET A 70 -77.65 -121.89 REMARK 500 1 TYR A 77 52.11 34.57 REMARK 500 1 LYS A 78 -125.09 -62.20 REMARK 500 1 PRO A 81 11.85 -54.34 REMARK 500 1 GLU A 89 -178.00 70.77 REMARK 500 1 VAL A 94 -107.95 -105.66 REMARK 500 1 LEU A 97 -174.91 47.95 REMARK 500 2 GLU A 2 26.73 46.18 REMARK 500 2 TYR A 5 -33.54 168.26 REMARK 500 2 THR A 9 -177.91 57.45 REMARK 500 2 ARG A 10 -56.26 72.75 REMARK 500 2 ARG A 20 90.10 118.40 REMARK 500 2 GLU A 23 -136.96 39.09 REMARK 500 2 SER A 45 80.55 -67.66 REMARK 500 2 ASP A 57 61.61 34.49 REMARK 500 2 HIS A 68 42.67 -86.69 REMARK 500 2 MET A 70 -110.39 -122.83 REMARK 500 2 HIS A 76 16.03 -154.81 REMARK 500 2 TYR A 77 73.36 42.16 REMARK 500 2 LYS A 78 -72.29 -49.49 REMARK 500 2 VAL A 94 -99.75 -49.66 REMARK 500 2 LEU A 97 117.28 68.57 REMARK 500 3 TRP A 3 -132.35 -121.12 REMARK 500 3 THR A 9 147.13 117.48 REMARK 500 3 ARG A 10 -44.64 31.90 REMARK 500 3 GLU A 19 -67.72 177.64 REMARK 500 3 ARG A 20 -19.78 147.00 REMARK 500 3 GLU A 23 -91.18 45.20 REMARK 500 3 SER A 36 33.74 -158.54 REMARK 500 3 SER A 45 80.91 -63.31 REMARK 500 3 ASP A 57 51.69 32.35 REMARK 500 3 HIS A 68 30.29 -82.31 REMARK 500 3 MET A 70 -79.58 -133.12 REMARK 500 3 HIS A 76 27.95 -156.10 REMARK 500 3 LYS A 78 -125.71 -68.80 REMARK 500 3 PRO A 81 8.69 -68.59 REMARK 500 3 VAL A 94 -100.39 -53.87 REMARK 500 4 GLU A 2 -80.03 62.85 REMARK 500 4 TYR A 5 -81.12 -179.62 REMARK 500 4 VAL A 8 -98.19 -101.06 REMARK 500 4 THR A 9 179.81 -46.77 REMARK 500 4 ARG A 10 -54.15 74.09 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Z3K A 1 98 UNP O43639 NCK2_HUMAN 283 380 SEQRES 1 A 98 ARG GLU TRP TYR TYR GLY ASN VAL THR ARG HIS GLN ALA SEQRES 2 A 98 GLU CYS ALA LEU ASN GLU ARG GLY VAL GLU GLY ASP PHE SEQRES 3 A 98 LEU ILE ARG ASP SER GLU SER SER PRO SER ASP PHE SER SEQRES 4 A 98 VAL SER LEU LYS ALA SER GLY LYS ASN LYS HIS PHE LYS SEQRES 5 A 98 VAL GLN LEU VAL ASP ASN VAL TYR CYS ILE GLY GLN ARG SEQRES 6 A 98 ARG PHE HIS THR MET ASP GLU LEU VAL GLU HIS TYR LYS SEQRES 7 A 98 LYS ALA PRO ILE PHE THR SER GLU HIS GLY GLU LYS LEU SEQRES 8 A 98 TYR LEU VAL ARG ALA LEU GLN HELIX 1 1 HIS A 11 ASN A 18 1 8 HELIX 2 2 GLU A 72 TYR A 77 1 6 SHEET 1 A 4 PHE A 26 ASP A 30 0 SHEET 2 A 4 ASP A 37 LYS A 43 -1 O SER A 39 N ARG A 29 SHEET 3 A 4 ASN A 48 VAL A 56 -1 O VAL A 53 N PHE A 38 SHEET 4 A 4 VAL A 59 ILE A 62 -1 O CYS A 61 N GLN A 54 SHEET 1 B 2 THR A 84 SER A 85 0 SHEET 2 B 2 GLU A 89 LYS A 90 -1 O GLU A 89 N SER A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1