HEADER ISOMERASE 15-MAR-05 1Z45 TITLE CRYSTAL STRUCTURE OF THE GAL10 FUSION PROTEIN GALACTOSE TITLE 2 MUTAROTASE/UDP-GALACTOSE 4-EPIMERASE FROM SACCHAROMYCES CEREVISIAE TITLE 3 COMPLEXED WITH NAD, UDP-GLUCOSE, AND GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAL10 BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.3.2, 5.1.3.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GAL10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS EPIMERASE, MUTAROTASE, METABOLISM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN REVDAT 9 23-AUG-23 1Z45 1 REMARK REVDAT 8 20-OCT-21 1Z45 1 SEQADV HETSYN REVDAT 7 29-JUL-20 1Z45 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 08-MAY-13 1Z45 1 HET HETATM HETNAM HETSYN REVDAT 6 2 1 REMARK SITE REVDAT 5 02-MAY-12 1Z45 1 COMPND VERSN REVDAT 4 24-FEB-09 1Z45 1 VERSN REVDAT 3 26-JUL-05 1Z45 1 JRNL REVDAT 2 10-MAY-05 1Z45 1 JRNL REVDAT 1 05-APR-05 1Z45 0 JRNL AUTH J.B.THODEN,H.M.HOLDEN JRNL TITL THE MOLECULAR ARCHITECTURE OF GALACTOSE JRNL TITL 2 MUTAROTASE/UDP-GALACTOSE 4-EPIMERASE FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF J.BIOL.CHEM. V. 280 21900 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15795221 JRNL DOI 10.1074/JBC.M502411200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 89827 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9080 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1960 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 89827 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 722 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.550 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34100 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRIES 1EK6 & 1SO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTAERYTHRITOL PROPOXYLATE 5/4, REMARK 280 HEPES, SODIUM CHLORIDE, GALACTOSE, UDP-GLUCOSE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.15000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER. THE SECOND PART OF THE BIOLOGICAL ASSEMBLY REMARK 300 IS GENERATED BY THE TWO-FOLD AXIS REMARK 300 LOCATED AT 42.9 0.0 0.0 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1014 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1357 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 ASP A 236 REMARK 465 TYR A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 LYS A 306 REMARK 465 VAL A 307 REMARK 465 THR A 308 REMARK 465 GLY A 309 REMARK 465 ARG A 310 REMARK 465 ARG A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 ASP A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 546 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1156 O HOH A 1156 2665 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 56 CD GLU A 56 OE2 0.067 REMARK 500 GLU A 77 CD GLU A 77 OE2 0.071 REMARK 500 GLU A 171 CD GLU A 171 OE2 0.067 REMARK 500 GLU A 228 CD GLU A 228 OE2 0.068 REMARK 500 GLU A 270 CD GLU A 270 OE2 0.081 REMARK 500 GLU A 272 CD GLU A 272 OE2 0.074 REMARK 500 GLU A 290 CD GLU A 290 OE2 0.070 REMARK 500 GLU A 334 CD GLU A 334 OE2 0.068 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.071 REMARK 500 GLU A 413 CD GLU A 413 OE2 0.069 REMARK 500 GLU A 517 CD GLU A 517 OE2 0.071 REMARK 500 GLU A 528 CD GLU A 528 OE2 0.072 REMARK 500 GLU A 579 CD GLU A 579 OE2 0.068 REMARK 500 GLU A 606 CD GLU A 606 OE2 0.080 REMARK 500 GLU A 619 CD GLU A 619 OE2 0.075 REMARK 500 GLU A 657 CD GLU A 657 OE2 0.069 REMARK 500 GLU A 676 CD GLU A 676 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 83 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 VAL A 224 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 241 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 VAL A 288 CA - CB - CG1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 302 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 323 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 397 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 500 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 500 CB - CG - OD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 SER A 562 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 564 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 566 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 566 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 630 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 650 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 650 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 680 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 680 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 697 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -71.99 -55.67 REMARK 500 ASN A 46 33.45 -140.66 REMARK 500 ASP A 181 61.87 -168.68 REMARK 500 PHE A 193 -119.32 -93.67 REMARK 500 LEU A 209 69.25 -69.42 REMARK 500 ILE A 211 114.66 -166.25 REMARK 500 LEU A 316 -73.13 -59.88 REMARK 500 LEU A 318 71.35 -159.22 REMARK 500 ALA A 366 -135.49 -135.85 REMARK 500 ASP A 419 45.90 -103.69 REMARK 500 ASN A 432 -162.36 66.73 REMARK 500 LYS A 436 12.35 54.36 REMARK 500 SER A 460 -110.77 35.04 REMARK 500 ASN A 533 86.64 -170.08 REMARK 500 ASP A 599 67.39 -161.61 REMARK 500 ALA A 608 134.85 -39.73 REMARK 500 PRO A 610 108.62 -59.82 REMARK 500 SER A 653 -150.19 -123.81 REMARK 500 ALA A 654 63.46 32.52 REMARK 500 TYR A 669 -151.73 58.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 350 O REMARK 620 2 ASN A 351 OD1 87.4 REMARK 620 3 GLN A 475 OE1 144.8 76.7 REMARK 620 4 HOH A 816 O 84.8 157.6 98.1 REMARK 620 5 HOH A 817 O 119.2 102.3 94.9 99.8 REMARK 620 6 HOH A1106 O 82.4 97.0 69.0 61.1 151.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 357 O REMARK 620 2 VAL A 360 O 96.9 REMARK 620 3 HOH A1053 O 87.4 92.2 REMARK 620 4 HOH A1054 O 89.1 89.8 176.2 REMARK 620 5 HOH A1055 O 85.0 161.9 105.8 72.2 REMARK 620 6 HOH A1223 O 174.7 83.7 97.8 85.6 92.8 REMARK 620 N 1 2 3 4 5 DBREF 1Z45 A 1 699 UNP P04397 GAL10_YEAST 1 699 SEQADV 1Z45 ILE A 518 UNP P04397 MET 518 ENGINEERED MUTATION SEQRES 1 A 699 MET THR ALA GLN LEU GLN SER GLU SER THR SER LYS ILE SEQRES 2 A 699 VAL LEU VAL THR GLY GLY ALA GLY TYR ILE GLY SER HIS SEQRES 3 A 699 THR VAL VAL GLU LEU ILE GLU ASN GLY TYR ASP CYS VAL SEQRES 4 A 699 VAL ALA ASP ASN LEU SER ASN SER THR TYR ASP SER VAL SEQRES 5 A 699 ALA ARG LEU GLU VAL LEU THR LYS HIS HIS ILE PRO PHE SEQRES 6 A 699 TYR GLU VAL ASP LEU CYS ASP ARG LYS GLY LEU GLU LYS SEQRES 7 A 699 VAL PHE LYS GLU TYR LYS ILE ASP SER VAL ILE HIS PHE SEQRES 8 A 699 ALA GLY LEU LYS ALA VAL GLY GLU SER THR GLN ILE PRO SEQRES 9 A 699 LEU ARG TYR TYR HIS ASN ASN ILE LEU GLY THR VAL VAL SEQRES 10 A 699 LEU LEU GLU LEU MET GLN GLN TYR ASN VAL SER LYS PHE SEQRES 11 A 699 VAL PHE SER SER SER ALA THR VAL TYR GLY ASP ALA THR SEQRES 12 A 699 ARG PHE PRO ASN MET ILE PRO ILE PRO GLU GLU CYS PRO SEQRES 13 A 699 LEU GLY PRO THR ASN PRO TYR GLY HIS THR LYS TYR ALA SEQRES 14 A 699 ILE GLU ASN ILE LEU ASN ASP LEU TYR ASN SER ASP LYS SEQRES 15 A 699 LYS SER TRP LYS PHE ALA ILE LEU ARG TYR PHE ASN PRO SEQRES 16 A 699 ILE GLY ALA HIS PRO SER GLY LEU ILE GLY GLU ASP PRO SEQRES 17 A 699 LEU GLY ILE PRO ASN ASN LEU LEU PRO TYR MET ALA GLN SEQRES 18 A 699 VAL ALA VAL GLY ARG ARG GLU LYS LEU TYR ILE PHE GLY SEQRES 19 A 699 ASP ASP TYR ASP SER ARG ASP GLY THR PRO ILE ARG ASP SEQRES 20 A 699 TYR ILE HIS VAL VAL ASP LEU ALA LYS GLY HIS ILE ALA SEQRES 21 A 699 ALA LEU GLN TYR LEU GLU ALA TYR ASN GLU ASN GLU GLY SEQRES 22 A 699 LEU CYS ARG GLU TRP ASN LEU GLY SER GLY LYS GLY SER SEQRES 23 A 699 THR VAL PHE GLU VAL TYR HIS ALA PHE CYS LYS ALA SER SEQRES 24 A 699 GLY ILE ASP LEU PRO TYR LYS VAL THR GLY ARG ARG ALA SEQRES 25 A 699 GLY ASP VAL LEU ASN LEU THR ALA LYS PRO ASP ARG ALA SEQRES 26 A 699 LYS ARG GLU LEU LYS TRP GLN THR GLU LEU GLN VAL GLU SEQRES 27 A 699 ASP SER CYS LYS ASP LEU TRP LYS TRP THR THR GLU ASN SEQRES 28 A 699 PRO PHE GLY TYR GLN LEU ARG GLY VAL GLU ALA ARG PHE SEQRES 29 A 699 SER ALA GLU ASP MET ARG TYR ASP ALA ARG PHE VAL THR SEQRES 30 A 699 ILE GLY ALA GLY THR ARG PHE GLN ALA THR PHE ALA ASN SEQRES 31 A 699 LEU GLY ALA SER ILE VAL ASP LEU LYS VAL ASN GLY GLN SEQRES 32 A 699 SER VAL VAL LEU GLY TYR GLU ASN GLU GLU GLY TYR LEU SEQRES 33 A 699 ASN PRO ASP SER ALA TYR ILE GLY ALA THR ILE GLY ARG SEQRES 34 A 699 TYR ALA ASN ARG ILE SER LYS GLY LYS PHE SER LEU CYS SEQRES 35 A 699 ASN LYS ASP TYR GLN LEU THR VAL ASN ASN GLY VAL ASN SEQRES 36 A 699 ALA ASN HIS SER SER ILE GLY SER PHE HIS ARG LYS ARG SEQRES 37 A 699 PHE LEU GLY PRO ILE ILE GLN ASN PRO SER LYS ASP VAL SEQRES 38 A 699 PHE THR ALA GLU TYR MET LEU ILE ASP ASN GLU LYS ASP SEQRES 39 A 699 THR GLU PHE PRO GLY ASP LEU LEU VAL THR ILE GLN TYR SEQRES 40 A 699 THR VAL ASN VAL ALA GLN LYS SER LEU GLU ILE VAL TYR SEQRES 41 A 699 LYS GLY LYS LEU THR ALA GLY GLU ALA THR PRO ILE ASN SEQRES 42 A 699 LEU THR ASN HIS SER TYR PHE ASN LEU ASN LYS PRO TYR SEQRES 43 A 699 GLY ASP THR ILE GLU GLY THR GLU ILE MET VAL ARG SER SEQRES 44 A 699 LYS LYS SER VAL ASP VAL ASP LYS ASN MET ILE PRO THR SEQRES 45 A 699 GLY ASN ILE VAL ASP ARG GLU ILE ALA THR PHE ASN SER SEQRES 46 A 699 THR LYS PRO THR VAL LEU GLY PRO LYS ASN PRO GLN PHE SEQRES 47 A 699 ASP CYS CYS PHE VAL VAL ASP GLU ASN ALA LYS PRO SER SEQRES 48 A 699 GLN ILE ASN THR LEU ASN ASN GLU LEU THR LEU ILE VAL SEQRES 49 A 699 LYS ALA PHE HIS PRO ASP SER ASN ILE THR LEU GLU VAL SEQRES 50 A 699 LEU SER THR GLU PRO THR TYR GLN PHE TYR THR GLY ASP SEQRES 51 A 699 PHE LEU SER ALA GLY TYR GLU ALA ARG GLN GLY PHE ALA SEQRES 52 A 699 ILE GLU PRO GLY ARG TYR ILE ASP ALA ILE ASN GLN GLU SEQRES 53 A 699 ASN TRP LYS ASP CYS VAL THR LEU LYS ASN GLY GLU THR SEQRES 54 A 699 TYR GLY SER LYS ILE VAL TYR ARG PHE SER HET GAL A 700 12 HET NA A 701 1 HET NA A 702 1 HET NAD A 703 44 HET UPG A 704 36 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 GAL C6 H12 O6 FORMUL 3 NA 2(NA 1+) FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 UPG C15 H24 N2 O17 P2 FORMUL 7 HOH *722(H2 O) HELIX 1 1 GLY A 21 ASN A 34 1 14 HELIX 2 2 TYR A 49 LYS A 60 1 12 HELIX 3 3 ASP A 72 TYR A 83 1 12 HELIX 4 4 ALA A 96 ILE A 103 1 8 HELIX 5 5 ILE A 103 ASN A 126 1 24 HELIX 6 6 THR A 137 GLY A 140 5 4 HELIX 7 7 ASP A 141 PHE A 145 5 5 HELIX 8 8 ASN A 161 ASP A 181 1 21 HELIX 9 9 ASN A 214 VAL A 224 1 11 HELIX 10 10 VAL A 251 TYR A 268 1 18 HELIX 11 11 VAL A 288 GLY A 300 1 13 HELIX 12 12 PRO A 322 LEU A 329 1 8 HELIX 13 13 GLN A 336 ASN A 351 1 16 HELIX 14 14 LEU A 391 ALA A 393 5 3 HELIX 15 15 ASN A 411 LEU A 416 1 6 HELIX 16 16 SER A 459 LYS A 467 5 9 HELIX 17 17 ASN A 491 THR A 495 5 5 HELIX 18 18 ASP A 671 GLN A 675 5 5 HELIX 19 19 TRP A 678 CYS A 681 5 4 SHEET 1 A 7 PHE A 65 GLU A 67 0 SHEET 2 A 7 ASP A 37 ASP A 42 1 N VAL A 40 O TYR A 66 SHEET 3 A 7 ILE A 13 THR A 17 1 N VAL A 14 O ASP A 37 SHEET 4 A 7 SER A 87 HIS A 90 1 O SER A 87 N LEU A 15 SHEET 5 A 7 LYS A 129 SER A 135 1 O VAL A 131 N HIS A 90 SHEET 6 A 7 LYS A 186 TYR A 192 1 O ALA A 188 N PHE A 130 SHEET 7 A 7 LEU A 274 LEU A 280 1 O ARG A 276 N ILE A 189 SHEET 1 B 2 ASN A 194 ILE A 196 0 SHEET 2 B 2 TYR A 248 HIS A 250 1 O ILE A 249 N ILE A 196 SHEET 1 C 2 ILE A 245 ARG A 246 0 SHEET 2 C 2 SER A 286 THR A 287 -1 O SER A 286 N ARG A 246 SHEET 1 D 5 VAL A 360 PHE A 364 0 SHEET 2 D 5 ARG A 374 ILE A 378 -1 O THR A 377 N GLU A 361 SHEET 3 D 5 PHE A 384 ALA A 389 -1 O PHE A 388 N VAL A 376 SHEET 4 D 5 ILE A 395 VAL A 400 -1 O ASP A 397 N THR A 387 SHEET 5 D 5 GLN A 403 SER A 404 -1 O GLN A 403 N VAL A 400 SHEET 1 E 2 THR A 426 ILE A 427 0 SHEET 2 E 2 THR A 535 ASN A 536 -1 O THR A 535 N ILE A 427 SHEET 1 F 2 ARG A 433 ILE A 434 0 SHEET 2 F 2 ALA A 456 ASN A 457 -1 O ALA A 456 N ILE A 434 SHEET 1 G 2 LYS A 438 LEU A 441 0 SHEET 2 G 2 LYS A 444 GLN A 447 -1 O TYR A 446 N PHE A 439 SHEET 1 H 9 LEU A 470 SER A 478 0 SHEET 2 H 9 VAL A 481 ASP A 490 -1 O THR A 483 N GLN A 475 SHEET 3 H 9 ASP A 500 ASN A 510 -1 O TYR A 507 N ALA A 484 SHEET 4 H 9 SER A 515 ALA A 526 -1 O THR A 525 N ASP A 500 SHEET 5 H 9 THR A 689 SER A 699 -1 O ILE A 694 N ILE A 518 SHEET 6 H 9 THR A 634 SER A 639 -1 N THR A 634 O SER A 699 SHEET 7 H 9 THR A 621 PHE A 627 -1 N ALA A 626 O LEU A 635 SHEET 8 H 9 THR A 553 VAL A 557 -1 N GLU A 554 O PHE A 627 SHEET 9 H 9 THR A 589 LEU A 591 -1 O THR A 589 N ILE A 555 SHEET 1 I 2 ALA A 529 PRO A 531 0 SHEET 2 I 2 THR A 683 LYS A 685 -1 O LEU A 684 N THR A 530 SHEET 1 J 4 TYR A 539 PHE A 540 0 SHEET 2 J 4 PHE A 662 GLY A 667 -1 O PHE A 662 N PHE A 540 SHEET 3 J 4 THR A 643 TYR A 647 -1 N TYR A 647 O ALA A 663 SHEET 4 J 4 ASP A 599 VAL A 603 -1 N PHE A 602 O TYR A 644 SHEET 1 K 2 LYS A 561 VAL A 565 0 SHEET 2 K 2 PRO A 571 ASP A 577 -1 O VAL A 576 N SER A 562 LINK O GLU A 350 NA NA A 702 1555 1555 2.35 LINK OD1 ASN A 351 NA NA A 702 1555 1555 2.84 LINK O LEU A 357 NA NA A 701 1555 1555 2.35 LINK O VAL A 360 NA NA A 701 1555 1555 2.39 LINK OE1 GLN A 475 NA NA A 702 1555 1555 2.34 LINK NA NA A 701 O HOH A1053 1555 1555 2.47 LINK NA NA A 701 O HOH A1054 1555 1555 2.46 LINK NA NA A 701 O HOH A1055 1555 1555 2.48 LINK NA NA A 701 O HOH A1223 1555 1555 2.48 LINK NA NA A 702 O HOH A 816 1555 1555 2.44 LINK NA NA A 702 O HOH A 817 1555 1555 2.34 LINK NA NA A 702 O HOH A1106 1555 1555 3.02 CISPEP 1 ILE A 149 PRO A 150 0 1.68 CISPEP 2 GLY A 428 ARG A 429 0 1.69 CISPEP 3 GLY A 471 PRO A 472 0 1.19 CISPEP 4 ASN A 595 PRO A 596 0 -1.81 CRYST1 120.900 125.200 142.300 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007027 0.00000