data_1Z4P # _entry.id 1Z4P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z4P pdb_00001z4p 10.2210/pdb1z4p/pdb RCSB RCSB032294 ? ? WWPDB D_1000032294 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Z4I ;the same protein complexed with deoxyribouridine 5'-monophosphate ; unspecified PDB 1Z4J ;the same protein complexed with uridine 2'-monophosphate ; unspecified PDB 1Z4K ;the same protein complexed with thymidine 3'-monophosphate ; unspecified PDB 1Z4L ;the same protein complexed with thymidine 5'-monophosphate ; unspecified PDB 1Z4M ;the same protein complexed with uridine 5'-monophosphate ; unspecified PDB 1Z4Q ;the same protein complexed with 3'-deoxy 2'3'-didehydrothymidine 5'-monophosphate (d4T-MP) ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z4P _pdbx_database_status.recvd_initial_deposition_date 2005-03-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wallden, K.' 1 'Ruzzenente, B.' 2 'Rinaldo-Matthis, A.' 3 'Bianchi, V.' 4 'Nordlund, P.' 5 # _citation.id primary _citation.title 'Structural basis for substrate specificity of the human mitochondrial deoxyribonucleotidase' _citation.journal_abbrev STRUCTURE _citation.journal_volume 13 _citation.page_first 1081 _citation.page_last 1088 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16004879 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.04.023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wallden, K.' 1 ? primary 'Ruzzenente, B.' 2 ? primary 'Rinaldo-Matthis, A.' 3 ? primary 'Bianchi, V.' 4 ? primary 'Nordlund, P.' 5 ? # _cell.entry_id 1Z4P _cell.length_a 73.380 _cell.length_b 73.380 _cell.length_c 105.437 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z4P _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "5'(3')-deoxyribonucleotidase" 22840.135 1 3.1.3.- D41N ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 347.221 1 ? ? ? ? 4 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Mitochondrial deoxyribonucleotidase, 5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGRALRVLVNMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ARG n 1 4 ALA n 1 5 LEU n 1 6 ARG n 1 7 VAL n 1 8 LEU n 1 9 VAL n 1 10 ASN n 1 11 MET n 1 12 ASP n 1 13 GLY n 1 14 VAL n 1 15 LEU n 1 16 ALA n 1 17 ASP n 1 18 PHE n 1 19 GLU n 1 20 GLY n 1 21 GLY n 1 22 PHE n 1 23 LEU n 1 24 ARG n 1 25 LYS n 1 26 PHE n 1 27 ARG n 1 28 ALA n 1 29 ARG n 1 30 PHE n 1 31 PRO n 1 32 ASP n 1 33 GLN n 1 34 PRO n 1 35 PHE n 1 36 ILE n 1 37 ALA n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ARG n 1 42 ARG n 1 43 GLY n 1 44 PHE n 1 45 TRP n 1 46 VAL n 1 47 SER n 1 48 GLU n 1 49 GLN n 1 50 TYR n 1 51 GLY n 1 52 ARG n 1 53 LEU n 1 54 ARG n 1 55 PRO n 1 56 GLY n 1 57 LEU n 1 58 SER n 1 59 GLU n 1 60 LYS n 1 61 ALA n 1 62 ILE n 1 63 SER n 1 64 ILE n 1 65 TRP n 1 66 GLU n 1 67 SER n 1 68 LYS n 1 69 ASN n 1 70 PHE n 1 71 PHE n 1 72 PHE n 1 73 GLU n 1 74 LEU n 1 75 GLU n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ALA n 1 81 VAL n 1 82 GLU n 1 83 ALA n 1 84 VAL n 1 85 LYS n 1 86 GLU n 1 87 MET n 1 88 ALA n 1 89 SER n 1 90 LEU n 1 91 GLN n 1 92 ASN n 1 93 THR n 1 94 ASP n 1 95 VAL n 1 96 PHE n 1 97 ILE n 1 98 CYS n 1 99 THR n 1 100 SER n 1 101 PRO n 1 102 ILE n 1 103 LYS n 1 104 MET n 1 105 PHE n 1 106 LYS n 1 107 TYR n 1 108 CYS n 1 109 PRO n 1 110 TYR n 1 111 GLU n 1 112 LYS n 1 113 TYR n 1 114 ALA n 1 115 TRP n 1 116 VAL n 1 117 GLU n 1 118 LYS n 1 119 TYR n 1 120 PHE n 1 121 GLY n 1 122 PRO n 1 123 ASP n 1 124 PHE n 1 125 LEU n 1 126 GLU n 1 127 GLN n 1 128 ILE n 1 129 VAL n 1 130 LEU n 1 131 THR n 1 132 ARG n 1 133 ASP n 1 134 LYS n 1 135 THR n 1 136 VAL n 1 137 VAL n 1 138 SER n 1 139 ALA n 1 140 ASP n 1 141 LEU n 1 142 LEU n 1 143 ILE n 1 144 ASP n 1 145 ASP n 1 146 ARG n 1 147 PRO n 1 148 ASP n 1 149 ILE n 1 150 THR n 1 151 GLY n 1 152 ALA n 1 153 GLU n 1 154 PRO n 1 155 THR n 1 156 PRO n 1 157 SER n 1 158 TRP n 1 159 GLU n 1 160 HIS n 1 161 VAL n 1 162 LEU n 1 163 PHE n 1 164 THR n 1 165 ALA n 1 166 CYS n 1 167 HIS n 1 168 ASN n 1 169 GLN n 1 170 HIS n 1 171 LEU n 1 172 GLN n 1 173 LEU n 1 174 GLN n 1 175 PRO n 1 176 PRO n 1 177 ARG n 1 178 ARG n 1 179 ARG n 1 180 LEU n 1 181 HIS n 1 182 SER n 1 183 TRP n 1 184 ALA n 1 185 ASP n 1 186 ASP n 1 187 TRP n 1 188 LYS n 1 189 ALA n 1 190 ILE n 1 191 LEU n 1 192 ASP n 1 193 SER n 1 194 LYS n 1 195 ARG n 1 196 PRO n 1 197 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name plysS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NT5M_HUMAN _struct_ref.pdbx_db_accession Q9NPB1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z4P _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPB1 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 228 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1Z4P _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 10 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9NPB1 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 41 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 41 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DGP non-polymer n "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z4P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details 'pH 4.5' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2005-01-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1Z4P _reflns.number_all ? _reflns.number_obs 20163 _reflns.percent_possible_obs 99.6 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 40 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI 25.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.45 _reflns_shell.meanI_over_sigI_obs 0.045 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Z4P _refine.ls_number_reflns_obs 19103 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.77 _refine.ls_R_factor_obs 0.18969 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18834 _refine.ls_R_factor_R_free 0.21526 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1027 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 22.939 _refine.aniso_B[1][1] -0.31 _refine.aniso_B[2][2] -0.31 _refine.aniso_B[3][3] 0.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.147 _refine.pdbx_overall_ESU_R_Free 0.133 _refine.overall_SU_ML 0.087 _refine.overall_SU_B 3.059 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1597 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 1755 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 1678 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1490 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.623 1.961 ? 2280 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.952 3.000 ? 3464 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.654 5.000 ? 193 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 236 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1838 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.012 0.020 ? 369 'X-RAY DIFFRACTION' ? r_nbd_refined 0.210 0.200 ? 536 'X-RAY DIFFRACTION' ? r_nbd_other 0.261 0.200 ? 1787 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.176 0.200 ? 1445 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.144 0.200 ? 88 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.265 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.339 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.159 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.081 1.500 ? 973 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.996 2.000 ? 1579 'X-RAY DIFFRACTION' ? r_scbond_it 2.829 3.000 ? 705 'X-RAY DIFFRACTION' ? r_scangle_it 4.544 4.500 ? 701 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.998 _refine_ls_shell.d_res_low 2.050 _refine_ls_shell.number_reflns_R_work 1378 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.242 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Z4P _struct.title ;Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with deoxyriboguanosine 5'-monophosphate ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z4P _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'alfa beta fold, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? PHE A 30 ? ASP X 48 PHE X 61 1 ? 14 HELX_P HELX_P2 2 ALA A 37 ? ARG A 41 ? ALA X 68 ARG X 72 5 ? 5 HELX_P HELX_P3 3 TRP A 45 ? ARG A 54 ? TRP X 76 ARG X 85 1 ? 10 HELX_P HELX_P4 4 GLY A 56 ? GLU A 66 ? GLY X 87 GLU X 97 1 ? 11 HELX_P HELX_P5 5 GLY A 79 ? LEU A 90 ? GLY X 110 LEU X 121 1 ? 12 HELX_P HELX_P6 6 TYR A 107 ? GLY A 121 ? TYR X 138 GLY X 152 1 ? 15 HELX_P HELX_P7 7 PRO A 122 ? GLU A 126 ? PRO X 153 GLU X 157 5 ? 5 HELX_P HELX_P8 8 ALA A 165 ? GLN A 169 ? ALA X 196 GLN X 200 5 ? 5 HELX_P HELX_P9 9 ASP A 186 ? SER A 193 ? ASP X 217 SER X 224 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C DGP . OP3 ? ? ? 1_555 B MG . MG ? ? X DGP 1 X MG 1001 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc2 metalc ? ? A ASN 10 OD1 ? ? ? 1_555 B MG . MG ? ? X ASN 41 X MG 1001 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc3 metalc ? ? A ASP 12 O ? ? ? 1_555 B MG . MG ? ? X ASP 43 X MG 1001 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc4 metalc ? ? A ASP 145 OD1 ? ? ? 1_555 B MG . MG ? ? X ASP 176 X MG 1001 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? X MG 1001 X HOH 1075 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? X MG 1001 X HOH 1110 1_555 ? ? ? ? ? ? ? 2.158 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 175 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 206 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 176 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 207 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.83 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 128 ? LEU A 130 ? ILE X 159 LEU X 161 A 2 THR A 93 ? THR A 99 ? THR X 124 THR X 130 A 3 LEU A 5 ? ASN A 10 ? LEU X 36 ASN X 41 A 4 LEU A 141 ? ASP A 144 ? LEU X 172 ASP X 175 A 5 GLU A 159 ? PHE A 163 ? GLU X 190 PHE X 194 A 6 ARG A 178 ? LEU A 180 ? ARG X 209 LEU X 211 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 129 ? O VAL X 160 N ILE A 97 ? N ILE X 128 A 2 3 O ASP A 94 ? O ASP X 125 N LEU A 5 ? N LEU X 36 A 3 4 N LEU A 8 ? N LEU X 39 O LEU A 141 ? O LEU X 172 A 4 5 N LEU A 142 ? N LEU X 173 O VAL A 161 ? O VAL X 192 A 5 6 N LEU A 162 ? N LEU X 193 O ARG A 178 ? O ARG X 209 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X MG 1001 ? 6 'BINDING SITE FOR RESIDUE MG X 1001' AC2 Software X DGP 1 ? 18 'BINDING SITE FOR RESIDUE DGP X 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DGP C . ? DGP X 1 . ? 1_555 ? 2 AC1 6 ASN A 10 ? ASN X 41 . ? 1_555 ? 3 AC1 6 ASP A 12 ? ASP X 43 . ? 1_555 ? 4 AC1 6 ASP A 145 ? ASP X 176 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH X 1075 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH X 1110 . ? 1_555 ? 7 AC2 18 ASN A 10 ? ASN X 41 . ? 1_555 ? 8 AC2 18 ASP A 12 ? ASP X 43 . ? 1_555 ? 9 AC2 18 PHE A 18 ? PHE X 49 . ? 1_555 ? 10 AC2 18 PHE A 44 ? PHE X 75 . ? 1_555 ? 11 AC2 18 TRP A 45 ? TRP X 76 . ? 1_555 ? 12 AC2 18 VAL A 46 ? VAL X 77 . ? 1_555 ? 13 AC2 18 SER A 47 ? SER X 78 . ? 1_555 ? 14 AC2 18 TRP A 65 ? TRP X 96 . ? 1_555 ? 15 AC2 18 PHE A 71 ? PHE X 102 . ? 1_555 ? 16 AC2 18 SER A 100 ? SER X 131 . ? 1_555 ? 17 AC2 18 LYS A 134 ? LYS X 165 . ? 1_555 ? 18 AC2 18 MG B . ? MG X 1001 . ? 1_555 ? 19 AC2 18 HOH D . ? HOH X 1007 . ? 1_555 ? 20 AC2 18 HOH D . ? HOH X 1071 . ? 1_555 ? 21 AC2 18 HOH D . ? HOH X 1075 . ? 1_555 ? 22 AC2 18 HOH D . ? HOH X 1078 . ? 1_555 ? 23 AC2 18 HOH D . ? HOH X 1108 . ? 1_555 ? 24 AC2 18 HOH D . ? HOH X 1110 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z4P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z4P _atom_sites.fract_transf_matrix[1][1] 0.013628 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013628 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 32 ? ? ? X . n A 1 2 GLY 2 33 ? ? ? X . n A 1 3 ARG 3 34 34 ARG ARG X . n A 1 4 ALA 4 35 35 ALA ALA X . n A 1 5 LEU 5 36 36 LEU LEU X . n A 1 6 ARG 6 37 37 ARG ARG X . n A 1 7 VAL 7 38 38 VAL VAL X . n A 1 8 LEU 8 39 39 LEU LEU X . n A 1 9 VAL 9 40 40 VAL VAL X . n A 1 10 ASN 10 41 41 ASN ASN X . n A 1 11 MET 11 42 42 MET MET X . n A 1 12 ASP 12 43 43 ASP ASP X . n A 1 13 GLY 13 44 44 GLY GLY X . n A 1 14 VAL 14 45 45 VAL VAL X . n A 1 15 LEU 15 46 46 LEU LEU X . n A 1 16 ALA 16 47 47 ALA ALA X . n A 1 17 ASP 17 48 48 ASP ASP X . n A 1 18 PHE 18 49 49 PHE PHE X . n A 1 19 GLU 19 50 50 GLU GLU X . n A 1 20 GLY 20 51 51 GLY GLY X . n A 1 21 GLY 21 52 52 GLY GLY X . n A 1 22 PHE 22 53 53 PHE PHE X . n A 1 23 LEU 23 54 54 LEU LEU X . n A 1 24 ARG 24 55 55 ARG ARG X . n A 1 25 LYS 25 56 56 LYS LYS X . n A 1 26 PHE 26 57 57 PHE PHE X . n A 1 27 ARG 27 58 58 ARG ARG X . n A 1 28 ALA 28 59 59 ALA ALA X . n A 1 29 ARG 29 60 60 ARG ARG X . n A 1 30 PHE 30 61 61 PHE PHE X . n A 1 31 PRO 31 62 62 PRO PRO X . n A 1 32 ASP 32 63 63 ASP ASP X . n A 1 33 GLN 33 64 64 GLN GLN X . n A 1 34 PRO 34 65 65 PRO PRO X . n A 1 35 PHE 35 66 66 PHE PHE X . n A 1 36 ILE 36 67 67 ILE ILE X . n A 1 37 ALA 37 68 68 ALA ALA X . n A 1 38 LEU 38 69 69 LEU LEU X . n A 1 39 GLU 39 70 70 GLU GLU X . n A 1 40 ASP 40 71 71 ASP ASP X . n A 1 41 ARG 41 72 72 ARG ARG X . n A 1 42 ARG 42 73 73 ARG ARG X . n A 1 43 GLY 43 74 74 GLY GLY X . n A 1 44 PHE 44 75 75 PHE PHE X . n A 1 45 TRP 45 76 76 TRP TRP X . n A 1 46 VAL 46 77 77 VAL VAL X . n A 1 47 SER 47 78 78 SER SER X . n A 1 48 GLU 48 79 79 GLU GLU X . n A 1 49 GLN 49 80 80 GLN GLN X . n A 1 50 TYR 50 81 81 TYR TYR X . n A 1 51 GLY 51 82 82 GLY GLY X . n A 1 52 ARG 52 83 83 ARG ARG X . n A 1 53 LEU 53 84 84 LEU LEU X . n A 1 54 ARG 54 85 85 ARG ARG X . n A 1 55 PRO 55 86 86 PRO PRO X . n A 1 56 GLY 56 87 87 GLY GLY X . n A 1 57 LEU 57 88 88 LEU LEU X . n A 1 58 SER 58 89 89 SER SER X . n A 1 59 GLU 59 90 90 GLU GLU X . n A 1 60 LYS 60 91 91 LYS LYS X . n A 1 61 ALA 61 92 92 ALA ALA X . n A 1 62 ILE 62 93 93 ILE ILE X . n A 1 63 SER 63 94 94 SER SER X . n A 1 64 ILE 64 95 95 ILE ILE X . n A 1 65 TRP 65 96 96 TRP TRP X . n A 1 66 GLU 66 97 97 GLU GLU X . n A 1 67 SER 67 98 98 SER SER X . n A 1 68 LYS 68 99 99 LYS LYS X . n A 1 69 ASN 69 100 100 ASN ASN X . n A 1 70 PHE 70 101 101 PHE PHE X . n A 1 71 PHE 71 102 102 PHE PHE X . n A 1 72 PHE 72 103 103 PHE PHE X . n A 1 73 GLU 73 104 104 GLU GLU X . n A 1 74 LEU 74 105 105 LEU LEU X . n A 1 75 GLU 75 106 106 GLU GLU X . n A 1 76 PRO 76 107 107 PRO PRO X . n A 1 77 LEU 77 108 108 LEU LEU X . n A 1 78 PRO 78 109 109 PRO PRO X . n A 1 79 GLY 79 110 110 GLY GLY X . n A 1 80 ALA 80 111 111 ALA ALA X . n A 1 81 VAL 81 112 112 VAL VAL X . n A 1 82 GLU 82 113 113 GLU GLU X . n A 1 83 ALA 83 114 114 ALA ALA X . n A 1 84 VAL 84 115 115 VAL VAL X . n A 1 85 LYS 85 116 116 LYS LYS X . n A 1 86 GLU 86 117 117 GLU GLU X . n A 1 87 MET 87 118 118 MET MET X . n A 1 88 ALA 88 119 119 ALA ALA X . n A 1 89 SER 89 120 120 SER SER X . n A 1 90 LEU 90 121 121 LEU LEU X . n A 1 91 GLN 91 122 122 GLN GLN X . n A 1 92 ASN 92 123 123 ASN ASN X . n A 1 93 THR 93 124 124 THR THR X . n A 1 94 ASP 94 125 125 ASP ASP X . n A 1 95 VAL 95 126 126 VAL VAL X . n A 1 96 PHE 96 127 127 PHE PHE X . n A 1 97 ILE 97 128 128 ILE ILE X . n A 1 98 CYS 98 129 129 CYS CYS X . n A 1 99 THR 99 130 130 THR THR X . n A 1 100 SER 100 131 131 SER SER X . n A 1 101 PRO 101 132 132 PRO PRO X . n A 1 102 ILE 102 133 133 ILE ILE X . n A 1 103 LYS 103 134 134 LYS LYS X . n A 1 104 MET 104 135 135 MET MET X . n A 1 105 PHE 105 136 136 PHE PHE X . n A 1 106 LYS 106 137 137 LYS LYS X . n A 1 107 TYR 107 138 138 TYR TYR X . n A 1 108 CYS 108 139 139 CYS CYS X . n A 1 109 PRO 109 140 140 PRO PRO X . n A 1 110 TYR 110 141 141 TYR TYR X . n A 1 111 GLU 111 142 142 GLU GLU X . n A 1 112 LYS 112 143 143 LYS LYS X . n A 1 113 TYR 113 144 144 TYR TYR X . n A 1 114 ALA 114 145 145 ALA ALA X . n A 1 115 TRP 115 146 146 TRP TRP X . n A 1 116 VAL 116 147 147 VAL VAL X . n A 1 117 GLU 117 148 148 GLU GLU X . n A 1 118 LYS 118 149 149 LYS LYS X . n A 1 119 TYR 119 150 150 TYR TYR X . n A 1 120 PHE 120 151 151 PHE PHE X . n A 1 121 GLY 121 152 152 GLY GLY X . n A 1 122 PRO 122 153 153 PRO PRO X . n A 1 123 ASP 123 154 154 ASP ASP X . n A 1 124 PHE 124 155 155 PHE PHE X . n A 1 125 LEU 125 156 156 LEU LEU X . n A 1 126 GLU 126 157 157 GLU GLU X . n A 1 127 GLN 127 158 158 GLN GLN X . n A 1 128 ILE 128 159 159 ILE ILE X . n A 1 129 VAL 129 160 160 VAL VAL X . n A 1 130 LEU 130 161 161 LEU LEU X . n A 1 131 THR 131 162 162 THR THR X . n A 1 132 ARG 132 163 163 ARG ARG X . n A 1 133 ASP 133 164 164 ASP ASP X . n A 1 134 LYS 134 165 165 LYS LYS X . n A 1 135 THR 135 166 166 THR THR X . n A 1 136 VAL 136 167 167 VAL VAL X . n A 1 137 VAL 137 168 168 VAL VAL X . n A 1 138 SER 138 169 169 SER SER X . n A 1 139 ALA 139 170 170 ALA ALA X . n A 1 140 ASP 140 171 171 ASP ASP X . n A 1 141 LEU 141 172 172 LEU LEU X . n A 1 142 LEU 142 173 173 LEU LEU X . n A 1 143 ILE 143 174 174 ILE ILE X . n A 1 144 ASP 144 175 175 ASP ASP X . n A 1 145 ASP 145 176 176 ASP ASP X . n A 1 146 ARG 146 177 177 ARG ARG X . n A 1 147 PRO 147 178 178 PRO PRO X . n A 1 148 ASP 148 179 179 ASP ASP X . n A 1 149 ILE 149 180 180 ILE ILE X . n A 1 150 THR 150 181 181 THR THR X . n A 1 151 GLY 151 182 182 GLY GLY X . n A 1 152 ALA 152 183 183 ALA ALA X . n A 1 153 GLU 153 184 184 GLU GLU X . n A 1 154 PRO 154 185 185 PRO PRO X . n A 1 155 THR 155 186 186 THR THR X . n A 1 156 PRO 156 187 187 PRO PRO X . n A 1 157 SER 157 188 188 SER SER X . n A 1 158 TRP 158 189 189 TRP TRP X . n A 1 159 GLU 159 190 190 GLU GLU X . n A 1 160 HIS 160 191 191 HIS HIS X . n A 1 161 VAL 161 192 192 VAL VAL X . n A 1 162 LEU 162 193 193 LEU LEU X . n A 1 163 PHE 163 194 194 PHE PHE X . n A 1 164 THR 164 195 195 THR THR X . n A 1 165 ALA 165 196 196 ALA ALA X . n A 1 166 CYS 166 197 197 CYS CYS X . n A 1 167 HIS 167 198 198 HIS HIS X . n A 1 168 ASN 168 199 199 ASN ASN X . n A 1 169 GLN 169 200 200 GLN GLN X . n A 1 170 HIS 170 201 201 HIS HIS X . n A 1 171 LEU 171 202 202 LEU LEU X . n A 1 172 GLN 172 203 203 GLN GLN X . n A 1 173 LEU 173 204 204 LEU LEU X . n A 1 174 GLN 174 205 205 GLN GLN X . n A 1 175 PRO 175 206 206 PRO PRO X . n A 1 176 PRO 176 207 207 PRO PRO X . n A 1 177 ARG 177 208 208 ARG ARG X . n A 1 178 ARG 178 209 209 ARG ARG X . n A 1 179 ARG 179 210 210 ARG ARG X . n A 1 180 LEU 180 211 211 LEU LEU X . n A 1 181 HIS 181 212 212 HIS HIS X . n A 1 182 SER 182 213 213 SER SER X . n A 1 183 TRP 183 214 214 TRP TRP X . n A 1 184 ALA 184 215 215 ALA ALA X . n A 1 185 ASP 185 216 216 ASP ASP X . n A 1 186 ASP 186 217 217 ASP ASP X . n A 1 187 TRP 187 218 218 TRP TRP X . n A 1 188 LYS 188 219 219 LYS LYS X . n A 1 189 ALA 189 220 220 ALA ALA X . n A 1 190 ILE 190 221 221 ILE ILE X . n A 1 191 LEU 191 222 222 LEU LEU X . n A 1 192 ASP 192 223 223 ASP ASP X . n A 1 193 SER 193 224 224 SER SER X . n A 1 194 LYS 194 225 225 LYS LYS X . n A 1 195 ARG 195 226 226 ARG ARG X . n A 1 196 PRO 196 227 227 PRO PRO X . n A 1 197 CYS 197 228 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1001 1 MG MG X . C 3 DGP 1 1 1 DGP DGP X . D 4 HOH 1 1002 3 HOH HOH X . D 4 HOH 2 1003 4 HOH HOH X . D 4 HOH 3 1004 5 HOH HOH X . D 4 HOH 4 1005 7 HOH HOH X . D 4 HOH 5 1006 8 HOH HOH X . D 4 HOH 6 1007 13 HOH HOH X . D 4 HOH 7 1008 14 HOH HOH X . D 4 HOH 8 1009 15 HOH HOH X . D 4 HOH 9 1010 16 HOH HOH X . D 4 HOH 10 1011 17 HOH HOH X . D 4 HOH 11 1012 18 HOH HOH X . D 4 HOH 12 1013 19 HOH HOH X . D 4 HOH 13 1014 20 HOH HOH X . D 4 HOH 14 1015 21 HOH HOH X . D 4 HOH 15 1016 22 HOH HOH X . D 4 HOH 16 1017 23 HOH HOH X . D 4 HOH 17 1018 24 HOH HOH X . D 4 HOH 18 1019 26 HOH HOH X . D 4 HOH 19 1020 27 HOH HOH X . D 4 HOH 20 1021 28 HOH HOH X . D 4 HOH 21 1022 29 HOH HOH X . D 4 HOH 22 1023 30 HOH HOH X . D 4 HOH 23 1024 33 HOH HOH X . D 4 HOH 24 1025 36 HOH HOH X . D 4 HOH 25 1026 37 HOH HOH X . D 4 HOH 26 1027 38 HOH HOH X . D 4 HOH 27 1028 39 HOH HOH X . D 4 HOH 28 1029 40 HOH HOH X . D 4 HOH 29 1030 42 HOH HOH X . D 4 HOH 30 1031 44 HOH HOH X . D 4 HOH 31 1032 45 HOH HOH X . D 4 HOH 32 1033 49 HOH HOH X . D 4 HOH 33 1034 50 HOH HOH X . D 4 HOH 34 1035 54 HOH HOH X . D 4 HOH 35 1036 55 HOH HOH X . D 4 HOH 36 1037 56 HOH HOH X . D 4 HOH 37 1038 58 HOH HOH X . D 4 HOH 38 1039 61 HOH HOH X . D 4 HOH 39 1040 63 HOH HOH X . D 4 HOH 40 1041 64 HOH HOH X . D 4 HOH 41 1042 65 HOH HOH X . D 4 HOH 42 1043 66 HOH HOH X . D 4 HOH 43 1044 67 HOH HOH X . D 4 HOH 44 1045 68 HOH HOH X . D 4 HOH 45 1046 70 HOH HOH X . D 4 HOH 46 1047 71 HOH HOH X . D 4 HOH 47 1048 72 HOH HOH X . D 4 HOH 48 1049 74 HOH HOH X . D 4 HOH 49 1050 78 HOH HOH X . D 4 HOH 50 1051 80 HOH HOH X . D 4 HOH 51 1052 82 HOH HOH X . D 4 HOH 52 1053 83 HOH HOH X . D 4 HOH 53 1054 84 HOH HOH X . D 4 HOH 54 1055 85 HOH HOH X . D 4 HOH 55 1056 86 HOH HOH X . D 4 HOH 56 1057 88 HOH HOH X . D 4 HOH 57 1058 89 HOH HOH X . D 4 HOH 58 1059 90 HOH HOH X . D 4 HOH 59 1060 91 HOH HOH X . D 4 HOH 60 1061 93 HOH HOH X . D 4 HOH 61 1062 94 HOH HOH X . D 4 HOH 62 1063 96 HOH HOH X . D 4 HOH 63 1064 97 HOH HOH X . D 4 HOH 64 1065 98 HOH HOH X . D 4 HOH 65 1066 99 HOH HOH X . D 4 HOH 66 1067 100 HOH HOH X . D 4 HOH 67 1068 101 HOH HOH X . D 4 HOH 68 1069 103 HOH HOH X . D 4 HOH 69 1070 105 HOH HOH X . D 4 HOH 70 1071 106 HOH HOH X . D 4 HOH 71 1072 107 HOH HOH X . D 4 HOH 72 1073 108 HOH HOH X . D 4 HOH 73 1074 109 HOH HOH X . D 4 HOH 74 1075 110 HOH HOH X . D 4 HOH 75 1076 111 HOH HOH X . D 4 HOH 76 1077 112 HOH HOH X . D 4 HOH 77 1078 113 HOH HOH X . D 4 HOH 78 1079 116 HOH HOH X . D 4 HOH 79 1080 117 HOH HOH X . D 4 HOH 80 1081 121 HOH HOH X . D 4 HOH 81 1082 123 HOH HOH X . D 4 HOH 82 1083 124 HOH HOH X . D 4 HOH 83 1084 126 HOH HOH X . D 4 HOH 84 1085 128 HOH HOH X . D 4 HOH 85 1086 129 HOH HOH X . D 4 HOH 86 1087 133 HOH HOH X . D 4 HOH 87 1088 134 HOH HOH X . D 4 HOH 88 1089 135 HOH HOH X . D 4 HOH 89 1090 136 HOH HOH X . D 4 HOH 90 1091 137 HOH HOH X . D 4 HOH 91 1092 138 HOH HOH X . D 4 HOH 92 1093 139 HOH HOH X . D 4 HOH 93 1094 140 HOH HOH X . D 4 HOH 94 1095 142 HOH HOH X . D 4 HOH 95 1096 143 HOH HOH X . D 4 HOH 96 1097 145 HOH HOH X . D 4 HOH 97 1098 146 HOH HOH X . D 4 HOH 98 1099 147 HOH HOH X . D 4 HOH 99 1100 148 HOH HOH X . D 4 HOH 100 1101 157 HOH HOH X . D 4 HOH 101 1102 158 HOH HOH X . D 4 HOH 102 1103 159 HOH HOH X . D 4 HOH 103 1104 160 HOH HOH X . D 4 HOH 104 1105 161 HOH HOH X . D 4 HOH 105 1106 162 HOH HOH X . D 4 HOH 106 1107 163 HOH HOH X . D 4 HOH 107 1108 174 HOH HOH X . D 4 HOH 108 1109 175 HOH HOH X . D 4 HOH 109 1110 176 HOH HOH X . D 4 HOH 110 1111 177 HOH HOH X . D 4 HOH 111 1112 178 HOH HOH X . D 4 HOH 112 1113 179 HOH HOH X . D 4 HOH 113 1114 180 HOH HOH X . D 4 HOH 114 1115 181 HOH HOH X . D 4 HOH 115 1116 182 HOH HOH X . D 4 HOH 116 1117 183 HOH HOH X . D 4 HOH 117 1118 184 HOH HOH X . D 4 HOH 118 1119 185 HOH HOH X . D 4 HOH 119 1120 186 HOH HOH X . D 4 HOH 120 1121 187 HOH HOH X . D 4 HOH 121 1122 188 HOH HOH X . D 4 HOH 122 1123 189 HOH HOH X . D 4 HOH 123 1124 190 HOH HOH X . D 4 HOH 124 1125 191 HOH HOH X . D 4 HOH 125 1126 192 HOH HOH X . D 4 HOH 126 1127 193 HOH HOH X . D 4 HOH 127 1128 194 HOH HOH X . D 4 HOH 128 1129 195 HOH HOH X . D 4 HOH 129 1130 196 HOH HOH X . D 4 HOH 130 1131 197 HOH HOH X . D 4 HOH 131 1132 198 HOH HOH X . D 4 HOH 132 1133 199 HOH HOH X . D 4 HOH 133 1134 200 HOH HOH X . D 4 HOH 134 1135 201 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 73.3800000000 -1.0000000000 0.0000000000 0.0000000000 73.3800000000 0.0000000000 0.0000000000 -1.0000000000 52.7185000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP3 ? C DGP . ? X DGP 1 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 OD1 ? A ASN 10 ? X ASN 41 ? 1_555 98.3 ? 2 OP3 ? C DGP . ? X DGP 1 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? A ASP 12 ? X ASP 43 ? 1_555 100.1 ? 3 OD1 ? A ASN 10 ? X ASN 41 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? A ASP 12 ? X ASP 43 ? 1_555 90.5 ? 4 OP3 ? C DGP . ? X DGP 1 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 OD1 ? A ASP 145 ? X ASP 176 ? 1_555 168.3 ? 5 OD1 ? A ASN 10 ? X ASN 41 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 OD1 ? A ASP 145 ? X ASP 176 ? 1_555 89.6 ? 6 O ? A ASP 12 ? X ASP 43 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 OD1 ? A ASP 145 ? X ASP 176 ? 1_555 88.4 ? 7 OP3 ? C DGP . ? X DGP 1 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1075 ? 1_555 88.0 ? 8 OD1 ? A ASN 10 ? X ASN 41 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1075 ? 1_555 86.2 ? 9 O ? A ASP 12 ? X ASP 43 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1075 ? 1_555 171.6 ? 10 OD1 ? A ASP 145 ? X ASP 176 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1075 ? 1_555 83.8 ? 11 OP3 ? C DGP . ? X DGP 1 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1110 ? 1_555 84.3 ? 12 OD1 ? A ASN 10 ? X ASN 41 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1110 ? 1_555 174.6 ? 13 O ? A ASP 12 ? X ASP 43 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1110 ? 1_555 84.4 ? 14 OD1 ? A ASP 145 ? X ASP 176 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1110 ? 1_555 88.6 ? 15 O ? D HOH . ? X HOH 1075 ? 1_555 MG ? B MG . ? X MG 1001 ? 1_555 O ? D HOH . ? X HOH 1110 ? 1_555 98.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.type' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_ref_seq_dif.details' 31 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 117 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1135 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CD2 _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 HIS _pdbx_validate_symm_contact.auth_seq_id_1 212 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1047 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_455 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE X ARG 37 ? ? CZ X ARG 37 ? ? NH1 X ARG 37 ? ? 125.01 120.30 4.71 0.50 N 2 1 NE X ARG 37 ? ? CZ X ARG 37 ? ? NH2 X ARG 37 ? ? 113.95 120.30 -6.35 0.50 N 3 1 CB X ASP 175 ? ? CG X ASP 175 ? ? OD2 X ASP 175 ? ? 124.41 118.30 6.11 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET X 42 ? ? -90.06 -72.50 2 1 VAL X 45 ? ? -129.78 -54.88 3 1 ARG X 85 ? ? -178.64 139.36 4 1 ASN X 100 ? ? 72.48 -1.11 5 1 PRO X 207 ? ? -99.46 31.56 6 1 SER X 213 ? ? 179.00 171.34 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id X _pdbx_unobs_or_zero_occ_atoms.auth_comp_id PRO _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 227 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id PRO _pdbx_unobs_or_zero_occ_atoms.label_seq_id 196 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X GLY 32 ? A GLY 1 2 1 Y 1 X GLY 33 ? A GLY 2 3 1 Y 1 X CYS 228 ? A CYS 197 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" DGP 4 water HOH #