data_1Z5M # _entry.id 1Z5M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z5M pdb_00001z5m 10.2210/pdb1z5m/pdb RCSB RCSB032327 ? ? WWPDB D_1000032327 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1uu7 'same protein with BIM-2' unspecified PDB 1uu8 'same protein with BIM-1' unspecified PDB 1uu9 'same protein with BIM-3' unspecified PDB 1uvr 'same protein with BIM-8' unspecified PDB 1h1w 'same protein with ATP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z5M _pdbx_database_status.recvd_initial_deposition_date 2005-03-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Whitlow, M.' 1 'Adler, M.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Novel small molecule inhibitors of 3-phosphoinositide-dependent kinase-1.' J.Biol.Chem. 280 19867 19874 2005 JBCHA3 US 0021-9258 0071 ? 15772071 10.1074/jbc.M501367200 1 'High Resolution Crystal Structure of the Human Pdk1 Catalytic Domain Defines the Regulatory Phosphopeptide Docking Site' 'Embo J.' 21 4219 4228 2002 EMJODG UK 0261-4189 0897 ? 12169624 10.1093/emboj/cdf437 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feldman, R.I.' 1 ? primary 'Wu, J.M.' 2 ? primary 'Polokoff, M.A.' 3 ? primary 'Kochanny, M.J.' 4 ? primary 'Dinter, H.' 5 ? primary 'Zhu, D.' 6 ? primary 'Biroc, S.L.' 7 ? primary 'Alicke, B.' 8 ? primary 'Bryant, J.' 9 ? primary 'Yuan, S.' 10 ? primary 'Buckman, B.O.' 11 ? primary 'Lentz, D.' 12 ? primary 'Ferrer, M.' 13 ? primary 'Whitlow, M.' 14 ? primary 'Adler, M.' 15 ? primary 'Finster, S.' 16 ? primary 'Chang, Z.' 17 ? primary 'Arnaiz, D.O.' 18 ? 1 'Biondi, R.M.' 19 ? 1 'Komander, D.' 20 ? 1 'Thomas, C.C.' 21 ? 1 'Lizcano, J.M.' 22 ? 1 'Deak, M.' 23 ? 1 'Alessi, D.R.' 24 ? 1 'Van Aalten, D.M.F.' 25 ? # _cell.entry_id 1Z5M _cell.length_a 124.61 _cell.length_b 124.61 _cell.length_c 46.97 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 120.0 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 # _symmetry.entry_id 1Z5M _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 154 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3-phosphoinositide dependent protein kinase-1' 33130.117 1 2.7.1.37 ? 'Kinase Domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'N-(3-{[5-BROMO-2-({3-[(PYRROLIDIN-1-YLCARBONYL)AMINO]PHENYL}AMINO)PYRIMIDIN-4-YL]AMINO}PROPYL)-2,2-DIMETHYLMALONAMIDE' 547.448 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 6 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hPDK1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE SKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKA RDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _entity_poly.pdbx_seq_one_letter_code_can ;PRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLV EKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 LYS n 1 4 LYS n 1 5 ARG n 1 6 PRO n 1 7 GLU n 1 8 ASP n 1 9 PHE n 1 10 LYS n 1 11 PHE n 1 12 GLY n 1 13 LYS n 1 14 ILE n 1 15 LEU n 1 16 GLY n 1 17 GLU n 1 18 GLY n 1 19 SER n 1 20 PHE n 1 21 SER n 1 22 THR n 1 23 VAL n 1 24 VAL n 1 25 LEU n 1 26 ALA n 1 27 ARG n 1 28 GLU n 1 29 LEU n 1 30 ALA n 1 31 THR n 1 32 SER n 1 33 ARG n 1 34 GLU n 1 35 TYR n 1 36 ALA n 1 37 ILE n 1 38 LYS n 1 39 ILE n 1 40 LEU n 1 41 GLU n 1 42 LYS n 1 43 ARG n 1 44 HIS n 1 45 ILE n 1 46 ILE n 1 47 LYS n 1 48 GLU n 1 49 ASN n 1 50 LYS n 1 51 VAL n 1 52 PRO n 1 53 TYR n 1 54 VAL n 1 55 THR n 1 56 ARG n 1 57 GLU n 1 58 ARG n 1 59 ASP n 1 60 VAL n 1 61 MET n 1 62 SER n 1 63 ARG n 1 64 LEU n 1 65 ASP n 1 66 HIS n 1 67 PRO n 1 68 PHE n 1 69 PHE n 1 70 VAL n 1 71 LYS n 1 72 LEU n 1 73 TYR n 1 74 PHE n 1 75 THR n 1 76 PHE n 1 77 GLN n 1 78 ASP n 1 79 ASP n 1 80 GLU n 1 81 LYS n 1 82 LEU n 1 83 TYR n 1 84 PHE n 1 85 GLY n 1 86 LEU n 1 87 SER n 1 88 TYR n 1 89 ALA n 1 90 LYS n 1 91 ASN n 1 92 GLY n 1 93 GLU n 1 94 LEU n 1 95 LEU n 1 96 LYS n 1 97 TYR n 1 98 ILE n 1 99 ARG n 1 100 LYS n 1 101 ILE n 1 102 GLY n 1 103 SER n 1 104 PHE n 1 105 ASP n 1 106 GLU n 1 107 THR n 1 108 CYS n 1 109 THR n 1 110 ARG n 1 111 PHE n 1 112 TYR n 1 113 THR n 1 114 ALA n 1 115 GLU n 1 116 ILE n 1 117 VAL n 1 118 SER n 1 119 ALA n 1 120 LEU n 1 121 GLU n 1 122 TYR n 1 123 LEU n 1 124 HIS n 1 125 GLY n 1 126 LYS n 1 127 GLY n 1 128 ILE n 1 129 ILE n 1 130 HIS n 1 131 ARG n 1 132 ASP n 1 133 LEU n 1 134 LYS n 1 135 PRO n 1 136 GLU n 1 137 ASN n 1 138 ILE n 1 139 LEU n 1 140 LEU n 1 141 ASN n 1 142 GLU n 1 143 ASP n 1 144 MET n 1 145 HIS n 1 146 ILE n 1 147 GLN n 1 148 ILE n 1 149 THR n 1 150 ASP n 1 151 PHE n 1 152 GLY n 1 153 THR n 1 154 ALA n 1 155 LYS n 1 156 VAL n 1 157 LEU n 1 158 SER n 1 159 PRO n 1 160 GLU n 1 161 SER n 1 162 LYS n 1 163 GLN n 1 164 ALA n 1 165 ARG n 1 166 ALA n 1 167 ASN n 1 168 SEP n 1 169 PHE n 1 170 VAL n 1 171 GLY n 1 172 THR n 1 173 ALA n 1 174 GLN n 1 175 TYR n 1 176 VAL n 1 177 SER n 1 178 PRO n 1 179 GLU n 1 180 LEU n 1 181 LEU n 1 182 THR n 1 183 GLU n 1 184 LYS n 1 185 SER n 1 186 ALA n 1 187 CYS n 1 188 LYS n 1 189 SER n 1 190 SER n 1 191 ASP n 1 192 LEU n 1 193 TRP n 1 194 ALA n 1 195 LEU n 1 196 GLY n 1 197 CYS n 1 198 ILE n 1 199 ILE n 1 200 TYR n 1 201 GLN n 1 202 LEU n 1 203 VAL n 1 204 ALA n 1 205 GLY n 1 206 LEU n 1 207 PRO n 1 208 PRO n 1 209 PHE n 1 210 ARG n 1 211 ALA n 1 212 GLY n 1 213 ASN n 1 214 GLU n 1 215 TYR n 1 216 LEU n 1 217 ILE n 1 218 PHE n 1 219 GLN n 1 220 LYS n 1 221 ILE n 1 222 ILE n 1 223 LYS n 1 224 LEU n 1 225 GLU n 1 226 TYR n 1 227 ASP n 1 228 PHE n 1 229 PRO n 1 230 GLU n 1 231 LYS n 1 232 PHE n 1 233 PHE n 1 234 PRO n 1 235 LYS n 1 236 ALA n 1 237 ARG n 1 238 ASP n 1 239 LEU n 1 240 VAL n 1 241 GLU n 1 242 LYS n 1 243 LEU n 1 244 LEU n 1 245 VAL n 1 246 LEU n 1 247 ASP n 1 248 ALA n 1 249 THR n 1 250 LYS n 1 251 ARG n 1 252 LEU n 1 253 GLY n 1 254 CYS n 1 255 GLU n 1 256 GLU n 1 257 MET n 1 258 GLU n 1 259 GLY n 1 260 TYR n 1 261 GLY n 1 262 PRO n 1 263 LEU n 1 264 LYS n 1 265 ALA n 1 266 HIS n 1 267 PRO n 1 268 PHE n 1 269 PHE n 1 270 GLU n 1 271 SER n 1 272 VAL n 1 273 THR n 1 274 TRP n 1 275 GLU n 1 276 ASN n 1 277 LEU n 1 278 HIS n 1 279 GLN n 1 280 GLN n 1 281 THR n 1 282 PRO n 1 283 PRO n 1 284 LYS n 1 285 LEU n 1 286 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'PDPK1, PDK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'unidentified baculovirus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10469 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'SF-21 cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pBlueBac4.5 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDK1-CAT-PBB4.5 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDPK1_HUMAN _struct_ref.pdbx_db_accession O15530 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLV EKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _struct_ref.pdbx_align_begin 74 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z5M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15530 _struct_ref_seq.db_align_beg 74 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 359 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 74 _struct_ref_seq.pdbx_auth_seq_align_end 359 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1Z5M _struct_ref_seq_dif.mon_id SEP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 168 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O15530 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 241 _struct_ref_seq_dif.details 'modified residue' _struct_ref_seq_dif.pdbx_auth_seq_num 241 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LI8 non-polymer . 'N-(3-{[5-BROMO-2-({3-[(PYRROLIDIN-1-YLCARBONYL)AMINO]PHENYL}AMINO)PYRIMIDIN-4-YL]AMINO}PROPYL)-2,2-DIMETHYLMALONAMIDE' ? 'C23 H31 Br N8 O3' 547.448 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z5M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.2 _exptl_crystal.density_percent_sol 62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, Tris, EDTA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 94.2 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(220); cylindrically bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1. _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1. # _reflns.entry_id 1Z5M _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.17 _reflns.d_resolution_low 20 _reflns.number_all 22440 _reflns.number_obs 21597 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0874 _reflns.pdbx_netI_over_sigmaI 8.33 _reflns.B_iso_Wilson_estimate 36.4 _reflns.pdbx_redundancy 3.417 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.17 _reflns_shell.d_res_low 2.31 _reflns_shell.percent_possible_all 91.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.347 _reflns_shell.meanI_over_sigI_obs 2.14 _reflns_shell.pdbx_redundancy 2.77 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3380 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Z5M _refine.ls_d_res_high 2.17 _refine.ls_d_res_low 8 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 22377 _refine.ls_number_reflns_obs 21580 _refine.ls_number_reflns_R_free 915 _refine.ls_percent_reflns_obs 96.4 _refine.ls_R_factor_all 0.232 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.269 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDK1 Homology model built from pdb entry 1O6L' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Overall _refine.B_iso_mean 25.7 _refine.aniso_B[1][1] 1.18 _refine.aniso_B[1][2] 1.61 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][2] 1.18 _refine.aniso_B[2][3] 0 _refine.aniso_B[3][3] -2.35 _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2255 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 2388 _refine_hist.d_res_high 2.17 _refine_hist.d_res_low 8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.77 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.46 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all . 2.17 2.27 . 0.309 90 0.373 . . 85 2094 . . 'X-RAY DIFFRACTION' . . 2.27 2.38 . 0.29 95.9 0.33 . . 110 2380 . . 'X-RAY DIFFRACTION' . . 2.38 2.53 . 0.268 98.2 0.318 . . 103 2529 . . 'X-RAY DIFFRACTION' . . 2.53 2.72 . 0.251 98.6 0.34 . . 124 2610 . . 'X-RAY DIFFRACTION' . . 2.72 2.98 . 0.222 97.9 0.255 . . 120 2628 . . 'X-RAY DIFFRACTION' . . 2.98 3.38 . 0.201 97.6 0.265 . . 107 2636 . . 'X-RAY DIFFRACTION' . . 3.38 4.15 . 0.163 97.6 0.22 . . 118 2677 . . 'X-RAY DIFFRACTION' . . 4.15 8 . 0.179 95.7 0.235 . . 90 2675 . . 'X-RAY DIFFRACTION' . # _struct.entry_id 1Z5M _struct.title ;Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-dimethylpropanediamide Complexed with Human PDK1 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z5M _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'PROTEIN INHIBITOR COMPLEX, SERINE KINASE, Transferase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 5 ? GLU A 7 ? ARG A 78 GLU A 80 5 ? 3 HELX_P HELX_P2 2 LYS A 42 ? GLU A 48 ? LYS A 115 GLU A 121 1 ? 7 HELX_P HELX_P3 3 LYS A 50 ? LEU A 64 ? LYS A 123 LEU A 137 1 ? 15 HELX_P HELX_P4 4 GLU A 93 ? GLY A 102 ? GLU A 166 GLY A 175 1 ? 10 HELX_P HELX_P5 5 ASP A 105 ? LYS A 126 ? ASP A 178 LYS A 199 1 ? 22 HELX_P HELX_P6 6 THR A 172 ? VAL A 176 ? THR A 245 VAL A 249 5 ? 5 HELX_P HELX_P7 7 SER A 177 ? THR A 182 ? SER A 250 THR A 255 1 ? 6 HELX_P HELX_P8 8 CYS A 187 ? GLY A 205 ? CYS A 260 GLY A 278 1 ? 19 HELX_P HELX_P9 9 ASN A 213 ? LEU A 224 ? ASN A 286 LEU A 297 1 ? 12 HELX_P HELX_P10 10 PHE A 233 ? GLU A 241 ? PHE A 306 GLU A 314 1 ? 9 HELX_P HELX_P11 11 ASP A 247 ? ARG A 251 ? ASP A 320 ARG A 324 5 ? 5 HELX_P HELX_P12 12 CYS A 254 ? GLU A 258 ? CYS A 327 GLU A 331 5 ? 5 HELX_P HELX_P13 13 GLY A 259 ? ALA A 265 ? GLY A 332 ALA A 338 1 ? 7 HELX_P HELX_P14 14 HIS A 266 ? GLU A 270 ? HIS A 339 GLU A 343 5 ? 5 HELX_P HELX_P15 15 THR A 273 ? GLN A 280 ? THR A 346 GLN A 353 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 168 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 169 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 9 ? GLU A 17 ? PHE A 82 GLU A 90 A 2 THR A 22 ? GLU A 28 ? THR A 95 GLU A 101 A 3 GLU A 34 ? GLU A 41 ? GLU A 107 GLU A 114 A 4 LYS A 81 ? LEU A 86 ? LYS A 154 LEU A 159 A 5 LEU A 72 ? GLN A 77 ? LEU A 145 GLN A 150 B 1 ILE A 128 ? ILE A 129 ? ILE A 201 ILE A 202 B 2 LYS A 155 ? VAL A 156 ? LYS A 228 VAL A 229 C 1 ILE A 138 ? LEU A 140 ? ILE A 211 LEU A 213 C 2 ILE A 146 ? ILE A 148 ? ILE A 219 ILE A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 12 ? N GLY A 85 O LEU A 25 ? O LEU A 98 A 2 3 N VAL A 24 ? N VAL A 97 O ILE A 37 ? O ILE A 110 A 3 4 N LEU A 40 ? N LEU A 113 O LEU A 82 ? O LEU A 155 A 4 5 O GLY A 85 ? O GLY A 158 N TYR A 73 ? N TYR A 146 B 1 2 N ILE A 129 ? N ILE A 202 O LYS A 155 ? O LYS A 228 C 1 2 N LEU A 139 ? N LEU A 212 O GLN A 147 ? O GLN A 220 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 600 ? 4 'BINDING SITE FOR RESIDUE SO4 A 600' AC2 Software A CL 698 ? 3 'BINDING SITE FOR RESIDUE CL A 698' AC3 Software A LI8 501 ? 18 'BINDING SITE FOR RESIDUE LI8 A 501' AC4 Software A GOL 602 ? 7 'BINDING SITE FOR RESIDUE GOL A 602' AC5 Software A GOL 606 ? 5 'BINDING SITE FOR RESIDUE GOL A 606' AC6 Software A GOL 607 ? 4 'BINDING SITE FOR RESIDUE GOL A 607' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS A 3 ? LYS A 76 . ? 1_555 ? 2 AC1 4 THR A 75 ? THR A 148 . ? 1_555 ? 3 AC1 4 PHE A 76 ? PHE A 149 . ? 1_555 ? 4 AC1 4 GLN A 77 ? GLN A 150 . ? 1_555 ? 5 AC2 3 LYS A 38 ? LYS A 111 . ? 1_555 ? 6 AC2 3 THR A 149 ? THR A 222 . ? 1_555 ? 7 AC2 3 LI8 D . ? LI8 A 501 . ? 1_555 ? 8 AC3 18 LEU A 15 ? LEU A 88 . ? 1_555 ? 9 AC3 18 GLY A 16 ? GLY A 89 . ? 1_555 ? 10 AC3 18 GLU A 17 ? GLU A 90 . ? 1_555 ? 11 AC3 18 GLY A 18 ? GLY A 91 . ? 1_555 ? 12 AC3 18 SER A 21 ? SER A 94 . ? 1_555 ? 13 AC3 18 VAL A 23 ? VAL A 96 . ? 1_555 ? 14 AC3 18 ALA A 36 ? ALA A 109 . ? 1_555 ? 15 AC3 18 LYS A 38 ? LYS A 111 . ? 1_555 ? 16 AC3 18 LEU A 86 ? LEU A 159 . ? 1_555 ? 17 AC3 18 SER A 87 ? SER A 160 . ? 1_555 ? 18 AC3 18 TYR A 88 ? TYR A 161 . ? 1_555 ? 19 AC3 18 ALA A 89 ? ALA A 162 . ? 1_555 ? 20 AC3 18 LYS A 90 ? LYS A 163 . ? 1_555 ? 21 AC3 18 GLY A 92 ? GLY A 165 . ? 1_555 ? 22 AC3 18 GLU A 93 ? GLU A 166 . ? 1_555 ? 23 AC3 18 LEU A 139 ? LEU A 212 . ? 1_555 ? 24 AC3 18 ASP A 150 ? ASP A 223 . ? 1_555 ? 25 AC3 18 CL C . ? CL A 698 . ? 1_555 ? 26 AC4 7 PHE A 9 ? PHE A 82 . ? 1_555 ? 27 AC4 7 LYS A 10 ? LYS A 83 . ? 1_555 ? 28 AC4 7 PHE A 11 ? PHE A 84 . ? 1_555 ? 29 AC4 7 GLU A 121 ? GLU A 194 . ? 1_556 ? 30 AC4 7 GLY A 261 ? GLY A 334 . ? 1_556 ? 31 AC4 7 LYS A 264 ? LYS A 337 . ? 1_556 ? 32 AC4 7 HOH H . ? HOH A 731 . ? 1_555 ? 33 AC5 5 PHE A 11 ? PHE A 84 . ? 1_555 ? 34 AC5 5 LYS A 81 ? LYS A 154 . ? 1_555 ? 35 AC5 5 TYR A 83 ? TYR A 156 . ? 1_555 ? 36 AC5 5 GLU A 258 ? GLU A 331 . ? 1_556 ? 37 AC5 5 HOH H . ? HOH A 731 . ? 1_555 ? 38 AC6 4 LEU A 40 ? LEU A 113 . ? 1_555 ? 39 AC6 4 TYR A 53 ? TYR A 126 . ? 1_555 ? 40 AC6 4 GLU A 57 ? GLU A 130 . ? 1_555 ? 41 AC6 4 GLY A 152 ? GLY A 225 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z5M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z5M _atom_sites.fract_transf_matrix[1][1] 0.008025 _atom_sites.fract_transf_matrix[1][2] 0.004633 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021290 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 74 74 PRO PRO A . n A 1 2 ARG 2 75 75 ARG ALA A . n A 1 3 LYS 3 76 76 LYS LYS A . n A 1 4 LYS 4 77 77 LYS LYS A . n A 1 5 ARG 5 78 78 ARG ARG A . n A 1 6 PRO 6 79 79 PRO PRO A . n A 1 7 GLU 7 80 80 GLU GLU A . n A 1 8 ASP 8 81 81 ASP ASP A . n A 1 9 PHE 9 82 82 PHE PHE A . n A 1 10 LYS 10 83 83 LYS LYS A . n A 1 11 PHE 11 84 84 PHE PHE A . n A 1 12 GLY 12 85 85 GLY GLY A . n A 1 13 LYS 13 86 86 LYS LYS A . n A 1 14 ILE 14 87 87 ILE ILE A . n A 1 15 LEU 15 88 88 LEU LEU A . n A 1 16 GLY 16 89 89 GLY GLY A . n A 1 17 GLU 17 90 90 GLU GLU A . n A 1 18 GLY 18 91 91 GLY GLY A . n A 1 19 SER 19 92 92 SER SER A . n A 1 20 PHE 20 93 93 PHE PHE A . n A 1 21 SER 21 94 94 SER SER A . n A 1 22 THR 22 95 95 THR THR A . n A 1 23 VAL 23 96 96 VAL VAL A . n A 1 24 VAL 24 97 97 VAL VAL A . n A 1 25 LEU 25 98 98 LEU LEU A . n A 1 26 ALA 26 99 99 ALA ALA A . n A 1 27 ARG 27 100 100 ARG ARG A . n A 1 28 GLU 28 101 101 GLU GLU A . n A 1 29 LEU 29 102 102 LEU LEU A . n A 1 30 ALA 30 103 103 ALA ALA A . n A 1 31 THR 31 104 104 THR THR A . n A 1 32 SER 32 105 105 SER SER A . n A 1 33 ARG 33 106 106 ARG ARG A . n A 1 34 GLU 34 107 107 GLU GLU A . n A 1 35 TYR 35 108 108 TYR TYR A . n A 1 36 ALA 36 109 109 ALA ALA A . n A 1 37 ILE 37 110 110 ILE ILE A . n A 1 38 LYS 38 111 111 LYS LYS A . n A 1 39 ILE 39 112 112 ILE ILE A . n A 1 40 LEU 40 113 113 LEU LEU A . n A 1 41 GLU 41 114 114 GLU GLU A . n A 1 42 LYS 42 115 115 LYS LYS A . n A 1 43 ARG 43 116 116 ARG ARG A . n A 1 44 HIS 44 117 117 HIS HIS A . n A 1 45 ILE 45 118 118 ILE ILE A . n A 1 46 ILE 46 119 119 ILE ILE A . n A 1 47 LYS 47 120 120 LYS LYS A . n A 1 48 GLU 48 121 121 GLU GLU A . n A 1 49 ASN 49 122 122 ASN ASN A . n A 1 50 LYS 50 123 123 LYS LYS A . n A 1 51 VAL 51 124 124 VAL VAL A . n A 1 52 PRO 52 125 125 PRO PRO A . n A 1 53 TYR 53 126 126 TYR TYR A . n A 1 54 VAL 54 127 127 VAL VAL A . n A 1 55 THR 55 128 128 THR THR A . n A 1 56 ARG 56 129 129 ARG ARG A . n A 1 57 GLU 57 130 130 GLU GLU A . n A 1 58 ARG 58 131 131 ARG ARG A . n A 1 59 ASP 59 132 132 ASP ASP A . n A 1 60 VAL 60 133 133 VAL VAL A . n A 1 61 MET 61 134 134 MET MET A . n A 1 62 SER 62 135 135 SER SER A . n A 1 63 ARG 63 136 136 ARG ARG A . n A 1 64 LEU 64 137 137 LEU LEU A . n A 1 65 ASP 65 138 138 ASP ASP A . n A 1 66 HIS 66 139 139 HIS HIS A . n A 1 67 PRO 67 140 140 PRO PRO A . n A 1 68 PHE 68 141 141 PHE PHE A . n A 1 69 PHE 69 142 142 PHE PHE A . n A 1 70 VAL 70 143 143 VAL VAL A . n A 1 71 LYS 71 144 144 LYS LYS A . n A 1 72 LEU 72 145 145 LEU LEU A . n A 1 73 TYR 73 146 146 TYR TYR A . n A 1 74 PHE 74 147 147 PHE PHE A . n A 1 75 THR 75 148 148 THR THR A . n A 1 76 PHE 76 149 149 PHE PHE A . n A 1 77 GLN 77 150 150 GLN GLN A . n A 1 78 ASP 78 151 151 ASP ASP A . n A 1 79 ASP 79 152 152 ASP ASP A . n A 1 80 GLU 80 153 153 GLU GLU A . n A 1 81 LYS 81 154 154 LYS LYS A . n A 1 82 LEU 82 155 155 LEU LEU A . n A 1 83 TYR 83 156 156 TYR TYR A . n A 1 84 PHE 84 157 157 PHE PHE A . n A 1 85 GLY 85 158 158 GLY GLY A . n A 1 86 LEU 86 159 159 LEU LEU A . n A 1 87 SER 87 160 160 SER SER A . n A 1 88 TYR 88 161 161 TYR TYR A . n A 1 89 ALA 89 162 162 ALA ALA A . n A 1 90 LYS 90 163 163 LYS LYS A . n A 1 91 ASN 91 164 164 ASN ASN A . n A 1 92 GLY 92 165 165 GLY GLY A . n A 1 93 GLU 93 166 166 GLU GLU A . n A 1 94 LEU 94 167 167 LEU LEU A . n A 1 95 LEU 95 168 168 LEU LEU A . n A 1 96 LYS 96 169 169 LYS LYS A . n A 1 97 TYR 97 170 170 TYR TYR A . n A 1 98 ILE 98 171 171 ILE ILE A . n A 1 99 ARG 99 172 172 ARG ARG A . n A 1 100 LYS 100 173 173 LYS LYS A . n A 1 101 ILE 101 174 174 ILE ILE A . n A 1 102 GLY 102 175 175 GLY GLY A . n A 1 103 SER 103 176 176 SER SER A . n A 1 104 PHE 104 177 177 PHE PHE A . n A 1 105 ASP 105 178 178 ASP ASP A . n A 1 106 GLU 106 179 179 GLU GLU A . n A 1 107 THR 107 180 180 THR THR A . n A 1 108 CYS 108 181 181 CYS CYS A . n A 1 109 THR 109 182 182 THR THR A . n A 1 110 ARG 110 183 183 ARG ARG A . n A 1 111 PHE 111 184 184 PHE PHE A . n A 1 112 TYR 112 185 185 TYR TYR A . n A 1 113 THR 113 186 186 THR THR A . n A 1 114 ALA 114 187 187 ALA ALA A . n A 1 115 GLU 115 188 188 GLU GLU A . n A 1 116 ILE 116 189 189 ILE ILE A . n A 1 117 VAL 117 190 190 VAL VAL A . n A 1 118 SER 118 191 191 SER SER A . n A 1 119 ALA 119 192 192 ALA ALA A . n A 1 120 LEU 120 193 193 LEU LEU A . n A 1 121 GLU 121 194 194 GLU GLU A . n A 1 122 TYR 122 195 195 TYR TYR A . n A 1 123 LEU 123 196 196 LEU LEU A . n A 1 124 HIS 124 197 197 HIS HIS A . n A 1 125 GLY 125 198 198 GLY GLY A . n A 1 126 LYS 126 199 199 LYS LYS A . n A 1 127 GLY 127 200 200 GLY GLY A . n A 1 128 ILE 128 201 201 ILE ILE A . n A 1 129 ILE 129 202 202 ILE ILE A . n A 1 130 HIS 130 203 203 HIS HIS A . n A 1 131 ARG 131 204 204 ARG ARG A . n A 1 132 ASP 132 205 205 ASP ASP A . n A 1 133 LEU 133 206 206 LEU LEU A . n A 1 134 LYS 134 207 207 LYS LYS A . n A 1 135 PRO 135 208 208 PRO PRO A . n A 1 136 GLU 136 209 209 GLU GLU A . n A 1 137 ASN 137 210 210 ASN ASN A . n A 1 138 ILE 138 211 211 ILE ILE A . n A 1 139 LEU 139 212 212 LEU LEU A . n A 1 140 LEU 140 213 213 LEU LEU A . n A 1 141 ASN 141 214 214 ASN ASN A . n A 1 142 GLU 142 215 215 GLU GLU A . n A 1 143 ASP 143 216 216 ASP ASP A . n A 1 144 MET 144 217 217 MET MET A . n A 1 145 HIS 145 218 218 HIS HIS A . n A 1 146 ILE 146 219 219 ILE ILE A . n A 1 147 GLN 147 220 220 GLN GLN A . n A 1 148 ILE 148 221 221 ILE ILE A . n A 1 149 THR 149 222 222 THR THR A . n A 1 150 ASP 150 223 223 ASP ASP A . n A 1 151 PHE 151 224 224 PHE PHE A . n A 1 152 GLY 152 225 225 GLY GLY A . n A 1 153 THR 153 226 226 THR THR A . n A 1 154 ALA 154 227 227 ALA ALA A . n A 1 155 LYS 155 228 228 LYS LYS A . n A 1 156 VAL 156 229 229 VAL VAL A . n A 1 157 LEU 157 230 230 LEU LEU A . n A 1 158 SER 158 231 ? ? ? A . n A 1 159 PRO 159 232 ? ? ? A . n A 1 160 GLU 160 233 ? ? ? A . n A 1 161 SER 161 234 ? ? ? A . n A 1 162 LYS 162 235 ? ? ? A . n A 1 163 GLN 163 236 ? ? ? A . n A 1 164 ALA 164 237 ? ? ? A . n A 1 165 ARG 165 238 ? ? ? A . n A 1 166 ALA 166 239 ? ? ? A . n A 1 167 ASN 167 240 ? ? ? A . n A 1 168 SEP 168 241 241 SEP SEP A . n A 1 169 PHE 169 242 242 PHE PHE A . n A 1 170 VAL 170 243 243 VAL VAL A . n A 1 171 GLY 171 244 244 GLY GLY A . n A 1 172 THR 172 245 245 THR THR A . n A 1 173 ALA 173 246 246 ALA ALA A . n A 1 174 GLN 174 247 247 GLN GLN A . n A 1 175 TYR 175 248 248 TYR TYR A . n A 1 176 VAL 176 249 249 VAL VAL A . n A 1 177 SER 177 250 250 SER SER A . n A 1 178 PRO 178 251 251 PRO PRO A . n A 1 179 GLU 179 252 252 GLU GLU A . n A 1 180 LEU 180 253 253 LEU LEU A . n A 1 181 LEU 181 254 254 LEU LEU A . n A 1 182 THR 182 255 255 THR THR A . n A 1 183 GLU 183 256 256 GLU GLU A . n A 1 184 LYS 184 257 257 LYS LYS A . n A 1 185 SER 185 258 258 SER SER A . n A 1 186 ALA 186 259 259 ALA ALA A . n A 1 187 CYS 187 260 260 CYS CYS A . n A 1 188 LYS 188 261 261 LYS LYS A . n A 1 189 SER 189 262 262 SER SER A . n A 1 190 SER 190 263 263 SER SER A . n A 1 191 ASP 191 264 264 ASP ASP A . n A 1 192 LEU 192 265 265 LEU LEU A . n A 1 193 TRP 193 266 266 TRP TRP A . n A 1 194 ALA 194 267 267 ALA ALA A . n A 1 195 LEU 195 268 268 LEU LEU A . n A 1 196 GLY 196 269 269 GLY GLY A . n A 1 197 CYS 197 270 270 CYS CYS A . n A 1 198 ILE 198 271 271 ILE ILE A . n A 1 199 ILE 199 272 272 ILE ILE A . n A 1 200 TYR 200 273 273 TYR TYR A . n A 1 201 GLN 201 274 274 GLN GLN A . n A 1 202 LEU 202 275 275 LEU LEU A . n A 1 203 VAL 203 276 276 VAL VAL A . n A 1 204 ALA 204 277 277 ALA ALA A . n A 1 205 GLY 205 278 278 GLY GLY A . n A 1 206 LEU 206 279 279 LEU LEU A . n A 1 207 PRO 207 280 280 PRO PRO A . n A 1 208 PRO 208 281 281 PRO PRO A . n A 1 209 PHE 209 282 282 PHE PHE A . n A 1 210 ARG 210 283 283 ARG ARG A . n A 1 211 ALA 211 284 284 ALA ALA A . n A 1 212 GLY 212 285 285 GLY GLY A . n A 1 213 ASN 213 286 286 ASN ASN A . n A 1 214 GLU 214 287 287 GLU GLU A . n A 1 215 TYR 215 288 288 TYR TYR A . n A 1 216 LEU 216 289 289 LEU LEU A . n A 1 217 ILE 217 290 290 ILE ILE A . n A 1 218 PHE 218 291 291 PHE PHE A . n A 1 219 GLN 219 292 292 GLN GLN A . n A 1 220 LYS 220 293 293 LYS LYS A . n A 1 221 ILE 221 294 294 ILE ILE A . n A 1 222 ILE 222 295 295 ILE ILE A . n A 1 223 LYS 223 296 296 LYS LYS A . n A 1 224 LEU 224 297 297 LEU LEU A . n A 1 225 GLU 225 298 298 GLU GLU A . n A 1 226 TYR 226 299 299 TYR TYR A . n A 1 227 ASP 227 300 300 ASP ASP A . n A 1 228 PHE 228 301 301 PHE PHE A . n A 1 229 PRO 229 302 302 PRO PRO A . n A 1 230 GLU 230 303 303 GLU GLU A . n A 1 231 LYS 231 304 304 LYS LYS A . n A 1 232 PHE 232 305 305 PHE PHE A . n A 1 233 PHE 233 306 306 PHE PHE A . n A 1 234 PRO 234 307 307 PRO PRO A . n A 1 235 LYS 235 308 308 LYS LYS A . n A 1 236 ALA 236 309 309 ALA ALA A . n A 1 237 ARG 237 310 310 ARG ARG A . n A 1 238 ASP 238 311 311 ASP ASP A . n A 1 239 LEU 239 312 312 LEU LEU A . n A 1 240 VAL 240 313 313 VAL VAL A . n A 1 241 GLU 241 314 314 GLU GLU A . n A 1 242 LYS 242 315 315 LYS LYS A . n A 1 243 LEU 243 316 316 LEU LEU A . n A 1 244 LEU 244 317 317 LEU LEU A . n A 1 245 VAL 245 318 318 VAL VAL A . n A 1 246 LEU 246 319 319 LEU LEU A . n A 1 247 ASP 247 320 320 ASP ASP A . n A 1 248 ALA 248 321 321 ALA ALA A . n A 1 249 THR 249 322 322 THR THR A . n A 1 250 LYS 250 323 323 LYS LYS A . n A 1 251 ARG 251 324 324 ARG ARG A . n A 1 252 LEU 252 325 325 LEU LEU A . n A 1 253 GLY 253 326 326 GLY GLY A . n A 1 254 CYS 254 327 327 CYS CYS A . n A 1 255 GLU 255 328 328 GLU GLU A . n A 1 256 GLU 256 329 329 GLU GLU A . n A 1 257 MET 257 330 330 MET MET A . n A 1 258 GLU 258 331 331 GLU GLU A . n A 1 259 GLY 259 332 332 GLY GLY A . n A 1 260 TYR 260 333 333 TYR TYR A . n A 1 261 GLY 261 334 334 GLY GLY A . n A 1 262 PRO 262 335 335 PRO PRO A . n A 1 263 LEU 263 336 336 LEU LEU A . n A 1 264 LYS 264 337 337 LYS LYS A . n A 1 265 ALA 265 338 338 ALA ALA A . n A 1 266 HIS 266 339 339 HIS HIS A . n A 1 267 PRO 267 340 340 PRO PRO A . n A 1 268 PHE 268 341 341 PHE PHE A . n A 1 269 PHE 269 342 342 PHE PHE A . n A 1 270 GLU 270 343 343 GLU GLU A . n A 1 271 SER 271 344 344 SER SER A . n A 1 272 VAL 272 345 345 VAL VAL A . n A 1 273 THR 273 346 346 THR THR A . n A 1 274 TRP 274 347 347 TRP TRP A . n A 1 275 GLU 275 348 348 GLU GLU A . n A 1 276 ASN 276 349 349 ASN ASN A . n A 1 277 LEU 277 350 350 LEU LEU A . n A 1 278 HIS 278 351 351 HIS HIS A . n A 1 279 GLN 279 352 352 GLN GLN A . n A 1 280 GLN 280 353 353 GLN GLN A . n A 1 281 THR 281 354 354 THR THR A . n A 1 282 PRO 282 355 355 PRO PRO A . n A 1 283 PRO 283 356 356 PRO PRO A . n A 1 284 LYS 284 357 357 LYS LYS A . n A 1 285 LEU 285 358 358 LEU LEU A . n A 1 286 THR 286 359 359 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 600 600 SO4 SO4 A . C 3 CL 1 698 698 CL CL A . D 4 LI8 1 501 501 LI8 320 A . E 5 GOL 1 602 602 GOL GOL A . F 5 GOL 1 606 606 GOL GOL A . G 5 GOL 1 607 607 GOL GOL A . H 6 HOH 1 701 701 HOH HOH A . H 6 HOH 2 702 702 HOH HOH A . H 6 HOH 3 703 703 HOH HOH A . H 6 HOH 4 704 704 HOH HOH A . H 6 HOH 5 705 705 HOH HOH A . H 6 HOH 6 706 706 HOH HOH A . H 6 HOH 7 707 707 HOH HOH A . H 6 HOH 8 708 708 HOH HOH A . H 6 HOH 9 709 709 HOH HOH A . H 6 HOH 10 710 710 HOH HOH A . H 6 HOH 11 711 711 HOH HOH A . H 6 HOH 12 712 712 HOH HOH A . H 6 HOH 13 713 713 HOH HOH A . H 6 HOH 14 714 714 HOH HOH A . H 6 HOH 15 715 715 HOH HOH A . H 6 HOH 16 716 716 HOH HOH A . H 6 HOH 17 717 717 HOH HOH A . H 6 HOH 18 718 718 HOH HOH A . H 6 HOH 19 719 719 HOH HOH A . H 6 HOH 20 720 720 HOH HOH A . H 6 HOH 21 721 721 HOH HOH A . H 6 HOH 22 722 722 HOH HOH A . H 6 HOH 23 723 723 HOH HOH A . H 6 HOH 24 724 724 HOH HOH A . H 6 HOH 25 725 725 HOH HOH A . H 6 HOH 26 726 726 HOH HOH A . H 6 HOH 27 727 727 HOH HOH A . H 6 HOH 28 728 728 HOH HOH A . H 6 HOH 29 729 729 HOH HOH A . H 6 HOH 30 730 730 HOH HOH A . H 6 HOH 31 731 731 HOH HOH A . H 6 HOH 32 732 732 HOH HOH A . H 6 HOH 33 733 733 HOH HOH A . H 6 HOH 34 734 734 HOH HOH A . H 6 HOH 35 735 735 HOH HOH A . H 6 HOH 36 736 736 HOH HOH A . H 6 HOH 37 737 737 HOH HOH A . H 6 HOH 38 738 738 HOH HOH A . H 6 HOH 39 739 739 HOH HOH A . H 6 HOH 40 740 740 HOH HOH A . H 6 HOH 41 741 741 HOH HOH A . H 6 HOH 42 742 742 HOH HOH A . H 6 HOH 43 743 743 HOH HOH A . H 6 HOH 44 744 744 HOH HOH A . H 6 HOH 45 745 745 HOH HOH A . H 6 HOH 46 746 746 HOH HOH A . H 6 HOH 47 747 747 HOH HOH A . H 6 HOH 48 748 748 HOH HOH A . H 6 HOH 49 749 749 HOH HOH A . H 6 HOH 50 750 750 HOH HOH A . H 6 HOH 51 751 751 HOH HOH A . H 6 HOH 52 752 752 HOH HOH A . H 6 HOH 53 753 753 HOH HOH A . H 6 HOH 54 754 754 HOH HOH A . H 6 HOH 55 755 755 HOH HOH A . H 6 HOH 56 756 756 HOH HOH A . H 6 HOH 57 757 757 HOH HOH A . H 6 HOH 58 758 758 HOH HOH A . H 6 HOH 59 759 759 HOH HOH A . H 6 HOH 60 760 760 HOH HOH A . H 6 HOH 61 761 761 HOH HOH A . H 6 HOH 62 762 762 HOH HOH A . H 6 HOH 63 763 763 HOH HOH A . H 6 HOH 64 764 764 HOH HOH A . H 6 HOH 65 765 765 HOH HOH A . H 6 HOH 66 766 766 HOH HOH A . H 6 HOH 67 767 767 HOH HOH A . H 6 HOH 68 768 768 HOH HOH A . H 6 HOH 69 769 769 HOH HOH A . H 6 HOH 70 770 770 HOH HOH A . H 6 HOH 71 771 771 HOH HOH A . H 6 HOH 72 772 772 HOH HOH A . H 6 HOH 73 773 773 HOH HOH A . H 6 HOH 74 774 774 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SEP _pdbx_struct_mod_residue.label_seq_id 168 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SEP _pdbx_struct_mod_residue.auth_seq_id 241 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 X-GEN 'data reduction' . ? 2 MOLREP phasing . ? 3 X-PLOR refinement 3.1 ? 4 X-GEN 'data scaling' . ? 5 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN THE INHIBITION CONSTANT (KI APPARENT) FOR N-(3-{[5-BROMO-2-({3-[(PYRROLIDIN-1- YLCARBONYL)AMINO]PHENYL}AMINO)PYRIMIDIN -4-YL]AMINO}PROPYL)-2,2-DIMETHYLMALONAMIDE AGAINST PDK1 WAS MEASURED AS 30 NM (N=5) DIRECT MEASURE PDK1 ACTIVITY WAS PERFORMED BY THE FOLLOWING PROTOCOL: THE FINAL ASSAY MIXTURE (60 UL) CONTAINED 50 MM TRIS- HCL, PH 7.5, 0.1 MM EGTA, 0.1 MM EDTA, 0.1% BETA-MERCAPTOETHANOL, 1 MG/ML BOVINE SERUM ALBUMIN, 10 MM MGOAC, 10 UM ATP, 0.2 UCI OF [GAMMA-33P]ATP, 7.5 UM OF SUBSTRATE PEPTIDE (H2NARRRGVTTKTFCGT) AND 60 NG OF PURIFIED RECOMBINANT HUMAN PDK1. AFTER 4 H AT ROOM TEMPERATURE, WE ADDED 25 MM EDTA AND SPOTTED A PORTION OF THE REACTION MIXTURE ON WHATMAN P81 PHOSPHOCELLULOSE PAPER. THE FILTER PAPER WAS WASHED 3 TIMES WITH 0.75% PHOSPHORIC ACID AND ONCE WITH ACETONE. AFTER DRYING, THE FILTER-BOUND LABELED PEPTIDE WAS QUANTIFIED USING A FUJI PHOSPHOIMAGER. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 151 ? ? -115.06 -166.85 2 1 ASP A 205 ? ? -156.30 39.49 3 1 ASP A 223 ? ? 70.10 70.40 4 1 THR A 255 ? ? -117.63 -94.68 5 1 LYS A 257 ? ? 45.23 18.18 6 1 GLU A 343 ? ? -28.01 -50.19 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 333 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 75 ? CG ? A ARG 2 CG 2 1 Y 1 A ARG 75 ? CD ? A ARG 2 CD 3 1 Y 1 A ARG 75 ? NE ? A ARG 2 NE 4 1 Y 1 A ARG 75 ? CZ ? A ARG 2 CZ 5 1 Y 1 A ARG 75 ? NH1 ? A ARG 2 NH1 6 1 Y 1 A ARG 75 ? NH2 ? A ARG 2 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 231 ? A SER 158 2 1 Y 1 A PRO 232 ? A PRO 159 3 1 Y 1 A GLU 233 ? A GLU 160 4 1 Y 1 A SER 234 ? A SER 161 5 1 Y 1 A LYS 235 ? A LYS 162 6 1 Y 1 A GLN 236 ? A GLN 163 7 1 Y 1 A ALA 237 ? A ALA 164 8 1 Y 1 A ARG 238 ? A ARG 165 9 1 Y 1 A ALA 239 ? A ALA 166 10 1 Y 1 A ASN 240 ? A ASN 167 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LI8 C1 C Y N 220 LI8 C2 C Y N 221 LI8 N3 N Y N 222 LI8 C4 C Y N 223 LI8 N5 N Y N 224 LI8 C6 C Y N 225 LI8 BR7 BR N N 226 LI8 N8 N N N 227 LI8 C10 C Y N 228 LI8 C11 C Y N 229 LI8 C12 C Y N 230 LI8 C13 C Y N 231 LI8 C14 C Y N 232 LI8 C15 C Y N 233 LI8 N16 N N N 234 LI8 C18 C N N 235 LI8 O19 O N N 236 LI8 N20 N N N 237 LI8 C21 C N N 238 LI8 C22 C N N 239 LI8 C23 C N N 240 LI8 C24 C N N 241 LI8 N25 N N N 242 LI8 C27 C N N 243 LI8 C28 C N N 244 LI8 N29 N N N 245 LI8 C31 C N N 246 LI8 O32 O N N 247 LI8 C33 C N N 248 LI8 C34 C N N 249 LI8 C35 C N N 250 LI8 C36 C N N 251 LI8 C37 C N N 252 LI8 O38 O N N 253 LI8 N39 N N N 254 LI8 H6 H N N 255 LI8 HN8 H N N 256 LI8 H11 H N N 257 LI8 H13 H N N 258 LI8 H14 H N N 259 LI8 H15 H N N 260 LI8 H16 H N N 261 LI8 H211 H N N 262 LI8 H212 H N N 263 LI8 H221 H N N 264 LI8 H222 H N N 265 LI8 H231 H N N 266 LI8 H232 H N N 267 LI8 H241 H N N 268 LI8 H242 H N N 269 LI8 H25 H N N 270 LI8 H271 H N N 271 LI8 H272 H N N 272 LI8 H281 H N N 273 LI8 H282 H N N 274 LI8 H29 H N N 275 LI8 H331 H N N 276 LI8 H332 H N N 277 LI8 H351 H N N 278 LI8 H352 H N N 279 LI8 H353 H N N 280 LI8 H361 H N N 281 LI8 H362 H N N 282 LI8 H363 H N N 283 LI8 H391 H N N 284 LI8 H392 H N N 285 LYS N N N N 286 LYS CA C N S 287 LYS C C N N 288 LYS O O N N 289 LYS CB C N N 290 LYS CG C N N 291 LYS CD C N N 292 LYS CE C N N 293 LYS NZ N N N 294 LYS OXT O N N 295 LYS H H N N 296 LYS H2 H N N 297 LYS HA H N N 298 LYS HB2 H N N 299 LYS HB3 H N N 300 LYS HG2 H N N 301 LYS HG3 H N N 302 LYS HD2 H N N 303 LYS HD3 H N N 304 LYS HE2 H N N 305 LYS HE3 H N N 306 LYS HZ1 H N N 307 LYS HZ2 H N N 308 LYS HZ3 H N N 309 LYS HXT H N N 310 MET N N N N 311 MET CA C N S 312 MET C C N N 313 MET O O N N 314 MET CB C N N 315 MET CG C N N 316 MET SD S N N 317 MET CE C N N 318 MET OXT O N N 319 MET H H N N 320 MET H2 H N N 321 MET HA H N N 322 MET HB2 H N N 323 MET HB3 H N N 324 MET HG2 H N N 325 MET HG3 H N N 326 MET HE1 H N N 327 MET HE2 H N N 328 MET HE3 H N N 329 MET HXT H N N 330 PHE N N N N 331 PHE CA C N S 332 PHE C C N N 333 PHE O O N N 334 PHE CB C N N 335 PHE CG C Y N 336 PHE CD1 C Y N 337 PHE CD2 C Y N 338 PHE CE1 C Y N 339 PHE CE2 C Y N 340 PHE CZ C Y N 341 PHE OXT O N N 342 PHE H H N N 343 PHE H2 H N N 344 PHE HA H N N 345 PHE HB2 H N N 346 PHE HB3 H N N 347 PHE HD1 H N N 348 PHE HD2 H N N 349 PHE HE1 H N N 350 PHE HE2 H N N 351 PHE HZ H N N 352 PHE HXT H N N 353 PRO N N N N 354 PRO CA C N S 355 PRO C C N N 356 PRO O O N N 357 PRO CB C N N 358 PRO CG C N N 359 PRO CD C N N 360 PRO OXT O N N 361 PRO H H N N 362 PRO HA H N N 363 PRO HB2 H N N 364 PRO HB3 H N N 365 PRO HG2 H N N 366 PRO HG3 H N N 367 PRO HD2 H N N 368 PRO HD3 H N N 369 PRO HXT H N N 370 SEP N N N N 371 SEP CA C N S 372 SEP CB C N N 373 SEP OG O N N 374 SEP C C N N 375 SEP O O N N 376 SEP OXT O N N 377 SEP P P N N 378 SEP O1P O N N 379 SEP O2P O N N 380 SEP O3P O N N 381 SEP H H N N 382 SEP H2 H N N 383 SEP HA H N N 384 SEP HB2 H N N 385 SEP HB3 H N N 386 SEP HXT H N N 387 SEP HOP2 H N N 388 SEP HOP3 H N N 389 SER N N N N 390 SER CA C N S 391 SER C C N N 392 SER O O N N 393 SER CB C N N 394 SER OG O N N 395 SER OXT O N N 396 SER H H N N 397 SER H2 H N N 398 SER HA H N N 399 SER HB2 H N N 400 SER HB3 H N N 401 SER HG H N N 402 SER HXT H N N 403 SO4 S S N N 404 SO4 O1 O N N 405 SO4 O2 O N N 406 SO4 O3 O N N 407 SO4 O4 O N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 VAL N N N N 477 VAL CA C N S 478 VAL C C N N 479 VAL O O N N 480 VAL CB C N N 481 VAL CG1 C N N 482 VAL CG2 C N N 483 VAL OXT O N N 484 VAL H H N N 485 VAL H2 H N N 486 VAL HA H N N 487 VAL HB H N N 488 VAL HG11 H N N 489 VAL HG12 H N N 490 VAL HG13 H N N 491 VAL HG21 H N N 492 VAL HG22 H N N 493 VAL HG23 H N N 494 VAL HXT H N N 495 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LI8 C1 C2 doub Y N 207 LI8 C1 C6 sing Y N 208 LI8 C1 BR7 sing N N 209 LI8 C2 N3 sing Y N 210 LI8 C2 N25 sing N N 211 LI8 N3 C4 doub Y N 212 LI8 C4 N5 sing Y N 213 LI8 C4 N8 sing N N 214 LI8 N5 C6 doub Y N 215 LI8 C6 H6 sing N N 216 LI8 N8 C10 sing N N 217 LI8 N8 HN8 sing N N 218 LI8 C10 C11 doub Y N 219 LI8 C10 C15 sing Y N 220 LI8 C11 C12 sing Y N 221 LI8 C11 H11 sing N N 222 LI8 C12 C13 doub Y N 223 LI8 C12 N16 sing N N 224 LI8 C13 C14 sing Y N 225 LI8 C13 H13 sing N N 226 LI8 C14 C15 doub Y N 227 LI8 C14 H14 sing N N 228 LI8 C15 H15 sing N N 229 LI8 N16 C18 sing N N 230 LI8 N16 H16 sing N N 231 LI8 C18 O19 doub N N 232 LI8 C18 N20 sing N N 233 LI8 N20 C21 sing N N 234 LI8 N20 C24 sing N N 235 LI8 C21 C22 sing N N 236 LI8 C21 H211 sing N N 237 LI8 C21 H212 sing N N 238 LI8 C22 C23 sing N N 239 LI8 C22 H221 sing N N 240 LI8 C22 H222 sing N N 241 LI8 C23 C24 sing N N 242 LI8 C23 H231 sing N N 243 LI8 C23 H232 sing N N 244 LI8 C24 H241 sing N N 245 LI8 C24 H242 sing N N 246 LI8 N25 C27 sing N N 247 LI8 N25 H25 sing N N 248 LI8 C27 C28 sing N N 249 LI8 C27 H271 sing N N 250 LI8 C27 H272 sing N N 251 LI8 C28 C33 sing N N 252 LI8 C28 H281 sing N N 253 LI8 C28 H282 sing N N 254 LI8 N29 C31 sing N N 255 LI8 N29 C33 sing N N 256 LI8 N29 H29 sing N N 257 LI8 C31 O32 doub N N 258 LI8 C31 C34 sing N N 259 LI8 C33 H331 sing N N 260 LI8 C33 H332 sing N N 261 LI8 C34 C35 sing N N 262 LI8 C34 C36 sing N N 263 LI8 C34 C37 sing N N 264 LI8 C35 H351 sing N N 265 LI8 C35 H352 sing N N 266 LI8 C35 H353 sing N N 267 LI8 C36 H361 sing N N 268 LI8 C36 H362 sing N N 269 LI8 C36 H363 sing N N 270 LI8 C37 O38 doub N N 271 LI8 C37 N39 sing N N 272 LI8 N39 H391 sing N N 273 LI8 N39 H392 sing N N 274 LYS N CA sing N N 275 LYS N H sing N N 276 LYS N H2 sing N N 277 LYS CA C sing N N 278 LYS CA CB sing N N 279 LYS CA HA sing N N 280 LYS C O doub N N 281 LYS C OXT sing N N 282 LYS CB CG sing N N 283 LYS CB HB2 sing N N 284 LYS CB HB3 sing N N 285 LYS CG CD sing N N 286 LYS CG HG2 sing N N 287 LYS CG HG3 sing N N 288 LYS CD CE sing N N 289 LYS CD HD2 sing N N 290 LYS CD HD3 sing N N 291 LYS CE NZ sing N N 292 LYS CE HE2 sing N N 293 LYS CE HE3 sing N N 294 LYS NZ HZ1 sing N N 295 LYS NZ HZ2 sing N N 296 LYS NZ HZ3 sing N N 297 LYS OXT HXT sing N N 298 MET N CA sing N N 299 MET N H sing N N 300 MET N H2 sing N N 301 MET CA C sing N N 302 MET CA CB sing N N 303 MET CA HA sing N N 304 MET C O doub N N 305 MET C OXT sing N N 306 MET CB CG sing N N 307 MET CB HB2 sing N N 308 MET CB HB3 sing N N 309 MET CG SD sing N N 310 MET CG HG2 sing N N 311 MET CG HG3 sing N N 312 MET SD CE sing N N 313 MET CE HE1 sing N N 314 MET CE HE2 sing N N 315 MET CE HE3 sing N N 316 MET OXT HXT sing N N 317 PHE N CA sing N N 318 PHE N H sing N N 319 PHE N H2 sing N N 320 PHE CA C sing N N 321 PHE CA CB sing N N 322 PHE CA HA sing N N 323 PHE C O doub N N 324 PHE C OXT sing N N 325 PHE CB CG sing N N 326 PHE CB HB2 sing N N 327 PHE CB HB3 sing N N 328 PHE CG CD1 doub Y N 329 PHE CG CD2 sing Y N 330 PHE CD1 CE1 sing Y N 331 PHE CD1 HD1 sing N N 332 PHE CD2 CE2 doub Y N 333 PHE CD2 HD2 sing N N 334 PHE CE1 CZ doub Y N 335 PHE CE1 HE1 sing N N 336 PHE CE2 CZ sing Y N 337 PHE CE2 HE2 sing N N 338 PHE CZ HZ sing N N 339 PHE OXT HXT sing N N 340 PRO N CA sing N N 341 PRO N CD sing N N 342 PRO N H sing N N 343 PRO CA C sing N N 344 PRO CA CB sing N N 345 PRO CA HA sing N N 346 PRO C O doub N N 347 PRO C OXT sing N N 348 PRO CB CG sing N N 349 PRO CB HB2 sing N N 350 PRO CB HB3 sing N N 351 PRO CG CD sing N N 352 PRO CG HG2 sing N N 353 PRO CG HG3 sing N N 354 PRO CD HD2 sing N N 355 PRO CD HD3 sing N N 356 PRO OXT HXT sing N N 357 SEP N CA sing N N 358 SEP N H sing N N 359 SEP N H2 sing N N 360 SEP CA CB sing N N 361 SEP CA C sing N N 362 SEP CA HA sing N N 363 SEP CB OG sing N N 364 SEP CB HB2 sing N N 365 SEP CB HB3 sing N N 366 SEP OG P sing N N 367 SEP C O doub N N 368 SEP C OXT sing N N 369 SEP OXT HXT sing N N 370 SEP P O1P doub N N 371 SEP P O2P sing N N 372 SEP P O3P sing N N 373 SEP O2P HOP2 sing N N 374 SEP O3P HOP3 sing N N 375 SER N CA sing N N 376 SER N H sing N N 377 SER N H2 sing N N 378 SER CA C sing N N 379 SER CA CB sing N N 380 SER CA HA sing N N 381 SER C O doub N N 382 SER C OXT sing N N 383 SER CB OG sing N N 384 SER CB HB2 sing N N 385 SER CB HB3 sing N N 386 SER OG HG sing N N 387 SER OXT HXT sing N N 388 SO4 S O1 doub N N 389 SO4 S O2 doub N N 390 SO4 S O3 sing N N 391 SO4 S O4 sing N N 392 THR N CA sing N N 393 THR N H sing N N 394 THR N H2 sing N N 395 THR CA C sing N N 396 THR CA CB sing N N 397 THR CA HA sing N N 398 THR C O doub N N 399 THR C OXT sing N N 400 THR CB OG1 sing N N 401 THR CB CG2 sing N N 402 THR CB HB sing N N 403 THR OG1 HG1 sing N N 404 THR CG2 HG21 sing N N 405 THR CG2 HG22 sing N N 406 THR CG2 HG23 sing N N 407 THR OXT HXT sing N N 408 TRP N CA sing N N 409 TRP N H sing N N 410 TRP N H2 sing N N 411 TRP CA C sing N N 412 TRP CA CB sing N N 413 TRP CA HA sing N N 414 TRP C O doub N N 415 TRP C OXT sing N N 416 TRP CB CG sing N N 417 TRP CB HB2 sing N N 418 TRP CB HB3 sing N N 419 TRP CG CD1 doub Y N 420 TRP CG CD2 sing Y N 421 TRP CD1 NE1 sing Y N 422 TRP CD1 HD1 sing N N 423 TRP CD2 CE2 doub Y N 424 TRP CD2 CE3 sing Y N 425 TRP NE1 CE2 sing Y N 426 TRP NE1 HE1 sing N N 427 TRP CE2 CZ2 sing Y N 428 TRP CE3 CZ3 doub Y N 429 TRP CE3 HE3 sing N N 430 TRP CZ2 CH2 doub Y N 431 TRP CZ2 HZ2 sing N N 432 TRP CZ3 CH2 sing Y N 433 TRP CZ3 HZ3 sing N N 434 TRP CH2 HH2 sing N N 435 TRP OXT HXT sing N N 436 TYR N CA sing N N 437 TYR N H sing N N 438 TYR N H2 sing N N 439 TYR CA C sing N N 440 TYR CA CB sing N N 441 TYR CA HA sing N N 442 TYR C O doub N N 443 TYR C OXT sing N N 444 TYR CB CG sing N N 445 TYR CB HB2 sing N N 446 TYR CB HB3 sing N N 447 TYR CG CD1 doub Y N 448 TYR CG CD2 sing Y N 449 TYR CD1 CE1 sing Y N 450 TYR CD1 HD1 sing N N 451 TYR CD2 CE2 doub Y N 452 TYR CD2 HD2 sing N N 453 TYR CE1 CZ doub Y N 454 TYR CE1 HE1 sing N N 455 TYR CE2 CZ sing Y N 456 TYR CE2 HE2 sing N N 457 TYR CZ OH sing N N 458 TYR OH HH sing N N 459 TYR OXT HXT sing N N 460 VAL N CA sing N N 461 VAL N H sing N N 462 VAL N H2 sing N N 463 VAL CA C sing N N 464 VAL CA CB sing N N 465 VAL CA HA sing N N 466 VAL C O doub N N 467 VAL C OXT sing N N 468 VAL CB CG1 sing N N 469 VAL CB CG2 sing N N 470 VAL CB HB sing N N 471 VAL CG1 HG11 sing N N 472 VAL CG1 HG12 sing N N 473 VAL CG1 HG13 sing N N 474 VAL CG2 HG21 sing N N 475 VAL CG2 HG22 sing N N 476 VAL CG2 HG23 sing N N 477 VAL OXT HXT sing N N 478 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 'N-(3-{[5-BROMO-2-({3-[(PYRROLIDIN-1-YLCARBONYL)AMINO]PHENYL}AMINO)PYRIMIDIN-4-YL]AMINO}PROPYL)-2,2-DIMETHYLMALONAMIDE' LI8 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O6L _pdbx_initial_refinement_model.details 'PDK1 Homology model built from pdb entry 1O6L' #