HEADER HYDROLASE 20-MAR-05 1Z5U TITLE CRYSTAL STRUCTURE OF S. TYPHIMURIUM APHA COMPLEXED WITH CYCLIC-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: APHA PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: APHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21(A) KEYWDS CLASS-B BACTERIAL ACID PHOSPHATASE, CYCLIC-AMP COMPLEX OF APHA KEYWDS 2 PROTEIN, METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.D.MAKDE,V.KUMAR REVDAT 4 25-OCT-23 1Z5U 1 REMARK LINK REVDAT 3 11-OCT-17 1Z5U 1 REMARK REVDAT 2 24-FEB-09 1Z5U 1 VERSN REVDAT 1 21-MAR-06 1Z5U 0 JRNL AUTH R.D.MAKDE,G.D.GUPTA,V.KUMAR JRNL TITL STRUCTURE AND FUNCTION OF CLASS-B BACTERIAL NON-SPECIFIC JRNL TITL 2 ACID PHOSPHATASE: FUNCTIONAL ROLE OF INVARIANT LYS154 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.D.MAKDE,V.KUMAR,G.D.GUPTA,J.JASTI,T.P.SINGH,S.K.MAHAJAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY DIFFRACTION STUDIES OF RECOMBINANT CLASS B REMARK 1 TITL 3 NON-SPECIFIC ACID PHOSPHATASE OF SALMONELLA TYPHIMURIUM REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1849 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14501135 REMARK 1 DOI 10.1107/S0907444903018006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 38354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1904 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3640 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 195 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 476 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.45 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.291 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.106 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.023 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.987 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 32.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38398 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26900 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB CODE 1Z5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, MAGNESIUM CHLORIDE, GLYCEROL, REMARK 280 SODIUM ACTETATE, CYCLIC-AMP, PH 4.7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.35500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 LEU B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 LEU C 1 REMARK 465 VAL C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 PRO C 5 REMARK 465 SER C 6 REMARK 465 LEU D 1 REMARK 465 VAL D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 47 -62.74 -102.63 REMARK 500 ASN A 211 29.25 49.63 REMARK 500 ILE B 47 -66.19 -94.97 REMARK 500 SER B 66 56.07 -152.72 REMARK 500 SER B 69 -173.42 -175.65 REMARK 500 LYS B 148 137.61 -31.27 REMARK 500 SER C 66 57.52 -143.13 REMARK 500 ILE D 47 -64.29 -98.41 REMARK 500 SER D 69 -162.48 -161.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD2 REMARK 620 2 ASP A 48 O 88.8 REMARK 620 3 ASP A 169 OD1 85.1 87.2 REMARK 620 4 HOH A 504 O 98.0 168.7 84.3 REMARK 620 5 HOH A 505 O 95.0 101.1 171.7 87.5 REMARK 620 6 HOH A 613 O 172.5 88.1 87.9 84.1 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 46 OD2 REMARK 620 2 ASP B 48 O 96.0 REMARK 620 3 ASP B 169 OD1 84.5 91.3 REMARK 620 4 HOH B 509 O 166.0 93.1 84.6 REMARK 620 5 HOH B 619 O 85.5 175.5 84.6 84.7 REMARK 620 6 HOH B 620 O 97.1 102.3 166.0 91.3 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 46 OD2 REMARK 620 2 ASP C 48 O 103.3 REMARK 620 3 ASP C 169 OD1 88.8 87.3 REMARK 620 4 HOH C 227 O 85.6 166.4 82.6 REMARK 620 5 HOH C 470 O 165.4 84.8 79.3 84.4 REMARK 620 6 HOH C 471 O 101.1 102.7 163.7 85.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 46 OD2 REMARK 620 2 ASP D 48 O 91.0 REMARK 620 3 ASP D 169 OD1 86.0 86.6 REMARK 620 4 HOH D 338 O 172.2 86.2 86.6 REMARK 620 5 HOH D 473 O 96.2 93.6 177.8 91.2 REMARK 620 6 HOH D 474 O 86.3 174.4 88.3 95.9 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP D 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z5G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NATIVE APHA PROTEIN FROM S. TYPHIMURIUM REMARK 900 RELATED ID: 1Z88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYS154ARG MUTANT OF MATURE APHA OF S. REMARK 900 TYPHIMURIUM DBREF 1Z5U A 1 214 GB 56694136 AAW22868 24 237 DBREF 1Z5U B 1 214 GB 56694136 AAW22868 24 237 DBREF 1Z5U C 1 214 GB 56694136 AAW22868 24 237 DBREF 1Z5U D 1 214 GB 56694136 AAW22868 24 237 SEQRES 1 A 214 LEU VAL SER SER PRO SER THR LEU ASN PRO GLY THR ASN SEQRES 2 A 214 VAL ALA LYS LEU ALA GLU GLN ALA PRO VAL HIS TRP VAL SEQRES 3 A 214 SER VAL ALA GLN ILE GLU ASN SER LEU THR GLY ARG PRO SEQRES 4 A 214 PRO MET ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU SEQRES 5 A 214 PHE SER SER PRO GLY PHE TRP ARG GLY LYS LYS THR TYR SEQRES 6 A 214 SER PRO ASP SER ASP ASP TYR LEU LYS ASN PRO ALA PHE SEQRES 7 A 214 TRP GLU LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE SEQRES 8 A 214 PRO LYS GLU ALA ALA ARG GLN LEU ILE ASP MET HIS VAL SEQRES 9 A 214 ARG ARG GLY ASP SER ILE TYR PHE VAL THR GLY ARG SER SEQRES 10 A 214 GLN THR LYS THR GLU THR VAL SER LYS THR LEU ALA ASP SEQRES 11 A 214 ASN PHE HIS ILE PRO ALA ALA ASN MET ASN PRO VAL ILE SEQRES 12 A 214 PHE ALA GLY ASP LYS PRO GLU GLN ASN THR LYS VAL GLN SEQRES 13 A 214 TRP LEU GLN GLU LYS ASN MET ARG ILE PHE TYR GLY ASP SEQRES 14 A 214 SER ASP ASN ASP ILE THR ALA ALA ARG ASP CYS GLY ILE SEQRES 15 A 214 ARG GLY ILE ARG ILE LEU ARG ALA ALA ASN SER THR TYR SEQRES 16 A 214 LYS PRO LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL SEQRES 17 A 214 ILE VAL ASN SER GLU TYR SEQRES 1 B 214 LEU VAL SER SER PRO SER THR LEU ASN PRO GLY THR ASN SEQRES 2 B 214 VAL ALA LYS LEU ALA GLU GLN ALA PRO VAL HIS TRP VAL SEQRES 3 B 214 SER VAL ALA GLN ILE GLU ASN SER LEU THR GLY ARG PRO SEQRES 4 B 214 PRO MET ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU SEQRES 5 B 214 PHE SER SER PRO GLY PHE TRP ARG GLY LYS LYS THR TYR SEQRES 6 B 214 SER PRO ASP SER ASP ASP TYR LEU LYS ASN PRO ALA PHE SEQRES 7 B 214 TRP GLU LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE SEQRES 8 B 214 PRO LYS GLU ALA ALA ARG GLN LEU ILE ASP MET HIS VAL SEQRES 9 B 214 ARG ARG GLY ASP SER ILE TYR PHE VAL THR GLY ARG SER SEQRES 10 B 214 GLN THR LYS THR GLU THR VAL SER LYS THR LEU ALA ASP SEQRES 11 B 214 ASN PHE HIS ILE PRO ALA ALA ASN MET ASN PRO VAL ILE SEQRES 12 B 214 PHE ALA GLY ASP LYS PRO GLU GLN ASN THR LYS VAL GLN SEQRES 13 B 214 TRP LEU GLN GLU LYS ASN MET ARG ILE PHE TYR GLY ASP SEQRES 14 B 214 SER ASP ASN ASP ILE THR ALA ALA ARG ASP CYS GLY ILE SEQRES 15 B 214 ARG GLY ILE ARG ILE LEU ARG ALA ALA ASN SER THR TYR SEQRES 16 B 214 LYS PRO LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL SEQRES 17 B 214 ILE VAL ASN SER GLU TYR SEQRES 1 C 214 LEU VAL SER SER PRO SER THR LEU ASN PRO GLY THR ASN SEQRES 2 C 214 VAL ALA LYS LEU ALA GLU GLN ALA PRO VAL HIS TRP VAL SEQRES 3 C 214 SER VAL ALA GLN ILE GLU ASN SER LEU THR GLY ARG PRO SEQRES 4 C 214 PRO MET ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU SEQRES 5 C 214 PHE SER SER PRO GLY PHE TRP ARG GLY LYS LYS THR TYR SEQRES 6 C 214 SER PRO ASP SER ASP ASP TYR LEU LYS ASN PRO ALA PHE SEQRES 7 C 214 TRP GLU LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE SEQRES 8 C 214 PRO LYS GLU ALA ALA ARG GLN LEU ILE ASP MET HIS VAL SEQRES 9 C 214 ARG ARG GLY ASP SER ILE TYR PHE VAL THR GLY ARG SER SEQRES 10 C 214 GLN THR LYS THR GLU THR VAL SER LYS THR LEU ALA ASP SEQRES 11 C 214 ASN PHE HIS ILE PRO ALA ALA ASN MET ASN PRO VAL ILE SEQRES 12 C 214 PHE ALA GLY ASP LYS PRO GLU GLN ASN THR LYS VAL GLN SEQRES 13 C 214 TRP LEU GLN GLU LYS ASN MET ARG ILE PHE TYR GLY ASP SEQRES 14 C 214 SER ASP ASN ASP ILE THR ALA ALA ARG ASP CYS GLY ILE SEQRES 15 C 214 ARG GLY ILE ARG ILE LEU ARG ALA ALA ASN SER THR TYR SEQRES 16 C 214 LYS PRO LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL SEQRES 17 C 214 ILE VAL ASN SER GLU TYR SEQRES 1 D 214 LEU VAL SER SER PRO SER THR LEU ASN PRO GLY THR ASN SEQRES 2 D 214 VAL ALA LYS LEU ALA GLU GLN ALA PRO VAL HIS TRP VAL SEQRES 3 D 214 SER VAL ALA GLN ILE GLU ASN SER LEU THR GLY ARG PRO SEQRES 4 D 214 PRO MET ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU SEQRES 5 D 214 PHE SER SER PRO GLY PHE TRP ARG GLY LYS LYS THR TYR SEQRES 6 D 214 SER PRO ASP SER ASP ASP TYR LEU LYS ASN PRO ALA PHE SEQRES 7 D 214 TRP GLU LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE SEQRES 8 D 214 PRO LYS GLU ALA ALA ARG GLN LEU ILE ASP MET HIS VAL SEQRES 9 D 214 ARG ARG GLY ASP SER ILE TYR PHE VAL THR GLY ARG SER SEQRES 10 D 214 GLN THR LYS THR GLU THR VAL SER LYS THR LEU ALA ASP SEQRES 11 D 214 ASN PHE HIS ILE PRO ALA ALA ASN MET ASN PRO VAL ILE SEQRES 12 D 214 PHE ALA GLY ASP LYS PRO GLU GLN ASN THR LYS VAL GLN SEQRES 13 D 214 TRP LEU GLN GLU LYS ASN MET ARG ILE PHE TYR GLY ASP SEQRES 14 D 214 SER ASP ASN ASP ILE THR ALA ALA ARG ASP CYS GLY ILE SEQRES 15 D 214 ARG GLY ILE ARG ILE LEU ARG ALA ALA ASN SER THR TYR SEQRES 16 D 214 LYS PRO LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL SEQRES 17 D 214 ILE VAL ASN SER GLU TYR HET MG A 501 1 HET CMP A 502 22 HET MG B 503 1 HET CMP B 504 22 HET MG C 505 1 HET CMP C 506 22 HET MG D 507 1 HET CMP D 508 22 HETNAM MG MAGNESIUM ION HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 5 MG 4(MG 2+) FORMUL 6 CMP 4(C10 H12 N5 O6 P) FORMUL 13 HOH *476(H2 O) HELIX 1 1 ASN A 13 GLU A 19 1 7 HELIX 2 2 SER A 27 LEU A 35 1 9 HELIX 3 3 SER A 54 SER A 66 1 13 HELIX 4 4 ASP A 70 LYS A 74 5 5 HELIX 5 5 ASN A 75 ASN A 83 1 9 HELIX 6 6 ASN A 84 PHE A 89 5 6 HELIX 7 7 LYS A 93 ARG A 106 1 14 HELIX 8 8 THR A 123 PHE A 132 1 10 HELIX 9 9 THR A 153 LYS A 161 1 9 HELIX 10 10 SER A 170 CYS A 180 1 11 HELIX 11 11 ASN B 13 GLU B 19 1 7 HELIX 12 12 SER B 27 THR B 36 1 10 HELIX 13 13 SER B 54 SER B 66 1 13 HELIX 14 14 ASP B 70 LYS B 74 5 5 HELIX 15 15 ASN B 75 ASN B 84 1 10 HELIX 16 16 GLY B 85 SER B 90 5 6 HELIX 17 17 LYS B 93 GLY B 107 1 15 HELIX 18 18 THR B 123 HIS B 133 1 11 HELIX 19 19 THR B 153 LYS B 161 1 9 HELIX 20 20 SER B 170 CYS B 180 1 11 HELIX 21 21 ASN C 13 GLU C 19 1 7 HELIX 22 22 SER C 27 LEU C 35 1 9 HELIX 23 23 SER C 54 SER C 66 1 13 HELIX 24 24 ASP C 70 LYS C 74 5 5 HELIX 25 25 ASN C 75 ASN C 83 1 9 HELIX 26 26 ASN C 84 SER C 90 5 7 HELIX 27 27 LYS C 93 GLY C 107 1 15 HELIX 28 28 THR C 123 PHE C 132 1 10 HELIX 29 29 THR C 153 LYS C 161 1 9 HELIX 30 30 SER C 170 GLY C 181 1 12 HELIX 31 31 ASN D 13 GLU D 19 1 7 HELIX 32 32 SER D 27 SER D 34 1 8 HELIX 33 33 SER D 54 SER D 66 1 13 HELIX 34 34 ASP D 70 LYS D 74 5 5 HELIX 35 35 ASN D 75 ASN D 84 1 10 HELIX 36 36 GLY D 85 SER D 90 5 6 HELIX 37 37 LYS D 93 GLY D 107 1 15 HELIX 38 38 THR D 123 PHE D 132 1 10 HELIX 39 39 THR D 153 LYS D 161 1 9 HELIX 40 40 SER D 170 GLY D 181 1 12 SHEET 1 A 7 HIS A 24 VAL A 26 0 SHEET 2 A 7 GLU A 207 ILE A 209 1 O VAL A 208 N VAL A 26 SHEET 3 A 7 ARG A 183 ARG A 186 1 N ARG A 186 O GLU A 207 SHEET 4 A 7 MET A 163 GLY A 168 1 N PHE A 166 O ILE A 185 SHEET 5 A 7 ALA A 42 PHE A 45 1 N GLY A 44 O ILE A 165 SHEET 6 A 7 SER A 109 THR A 114 1 O TYR A 111 N PHE A 45 SHEET 7 A 7 ILE A 143 PHE A 144 1 O ILE A 143 N THR A 114 SHEET 1 B 2 LEU A 52 PHE A 53 0 SHEET 2 B 2 ILE A 91 PRO A 92 -1 O ILE A 91 N PHE A 53 SHEET 1 C 7 HIS B 24 VAL B 26 0 SHEET 2 C 7 GLU B 207 ILE B 209 1 O VAL B 208 N HIS B 24 SHEET 3 C 7 ARG B 183 ARG B 186 1 N ARG B 186 O GLU B 207 SHEET 4 C 7 MET B 163 GLY B 168 1 N PHE B 166 O ILE B 185 SHEET 5 C 7 ALA B 42 ASP B 46 1 N ALA B 42 O ARG B 164 SHEET 6 C 7 SER B 109 THR B 114 1 O TYR B 111 N VAL B 43 SHEET 7 C 7 ILE B 143 PHE B 144 1 O ILE B 143 N PHE B 112 SHEET 1 D 2 LEU B 52 PHE B 53 0 SHEET 2 D 2 ILE B 91 PRO B 92 -1 O ILE B 91 N PHE B 53 SHEET 1 E 7 HIS C 24 VAL C 26 0 SHEET 2 E 7 GLU C 207 ILE C 209 1 O VAL C 208 N VAL C 26 SHEET 3 E 7 ARG C 183 ARG C 186 1 N ARG C 186 O GLU C 207 SHEET 4 E 7 MET C 163 GLY C 168 1 N PHE C 166 O ARG C 183 SHEET 5 E 7 ALA C 42 ASP C 46 1 N ALA C 42 O ARG C 164 SHEET 6 E 7 SER C 109 THR C 114 1 O SER C 109 N VAL C 43 SHEET 7 E 7 ILE C 143 PHE C 144 1 O ILE C 143 N THR C 114 SHEET 1 F 2 LEU C 52 PHE C 53 0 SHEET 2 F 2 ILE C 91 PRO C 92 -1 O ILE C 91 N PHE C 53 SHEET 1 G 7 HIS D 24 VAL D 26 0 SHEET 2 G 7 GLU D 207 ILE D 209 1 O VAL D 208 N VAL D 26 SHEET 3 G 7 ARG D 183 ARG D 186 1 N ARG D 186 O GLU D 207 SHEET 4 G 7 MET D 163 GLY D 168 1 N PHE D 166 O ILE D 185 SHEET 5 G 7 ALA D 42 PHE D 45 1 N ALA D 42 O ARG D 164 SHEET 6 G 7 SER D 109 THR D 114 1 O SER D 109 N VAL D 43 SHEET 7 G 7 ILE D 143 PHE D 144 1 O ILE D 143 N PHE D 112 SHEET 1 H 2 LEU D 52 PHE D 53 0 SHEET 2 H 2 ILE D 91 PRO D 92 -1 O ILE D 91 N PHE D 53 LINK OD2 ASP A 46 MG MG A 501 1555 1555 1.95 LINK O ASP A 48 MG MG A 501 1555 1555 2.18 LINK OD1 ASP A 169 MG MG A 501 1555 1555 2.25 LINK MG MG A 501 O HOH A 504 1555 1555 1.91 LINK MG MG A 501 O HOH A 505 1555 1555 2.05 LINK MG MG A 501 O HOH A 613 1555 1555 2.14 LINK OD2 ASP B 46 MG MG B 503 1555 1555 2.12 LINK O ASP B 48 MG MG B 503 1555 1555 2.03 LINK OD1 ASP B 169 MG MG B 503 1555 1555 2.16 LINK MG MG B 503 O HOH B 509 1555 1555 1.97 LINK MG MG B 503 O HOH B 619 1555 1555 2.06 LINK MG MG B 503 O HOH B 620 1555 1555 2.12 LINK OD2 ASP C 46 MG MG C 505 1555 1555 1.81 LINK O ASP C 48 MG MG C 505 1555 1555 2.03 LINK OD1 ASP C 169 MG MG C 505 1555 1555 2.14 LINK O HOH C 227 MG MG C 505 1555 1555 2.04 LINK O HOH C 470 MG MG C 505 1555 1555 2.00 LINK O HOH C 471 MG MG C 505 1555 1555 2.15 LINK OD2 ASP D 46 MG MG D 507 1555 1555 2.15 LINK O ASP D 48 MG MG D 507 1555 1555 2.10 LINK OD1 ASP D 169 MG MG D 507 1555 1555 2.20 LINK O HOH D 338 MG MG D 507 1555 1555 2.13 LINK O HOH D 473 MG MG D 507 1555 1555 2.22 LINK O HOH D 474 MG MG D 507 1555 1555 2.20 CISPEP 1 LYS A 196 PRO A 197 0 -0.14 CISPEP 2 LYS B 196 PRO B 197 0 0.28 CISPEP 3 LYS C 196 PRO C 197 0 -0.22 CISPEP 4 LYS D 196 PRO D 197 0 0.11 SITE 1 AC1 6 ASP A 46 ASP A 48 ASP A 169 HOH A 504 SITE 2 AC1 6 HOH A 505 HOH A 613 SITE 1 AC2 6 ASP B 46 ASP B 48 ASP B 169 HOH B 509 SITE 2 AC2 6 HOH B 619 HOH B 620 SITE 1 AC3 6 ASP C 46 ASP C 48 ASP C 169 HOH C 227 SITE 2 AC3 6 HOH C 470 HOH C 471 SITE 1 AC4 6 ASP D 46 ASP D 48 ASP D 169 HOH D 338 SITE 2 AC4 6 HOH D 473 HOH D 474 SITE 1 AC5 13 ASP A 48 PHE A 58 ASP A 70 TYR A 72 SITE 2 AC5 13 LEU A 73 GLY A 115 ARG A 116 THR A 194 SITE 3 AC5 13 TYR A 195 HOH A 503 HOH A 505 HOH A 613 SITE 4 AC5 13 HOH A 614 SITE 1 AC6 12 ASP B 48 PHE B 58 TYR B 72 GLY B 115 SITE 2 AC6 12 ARG B 116 THR B 194 TYR B 195 HOH B 511 SITE 3 AC6 12 HOH B 512 HOH B 620 HOH B 621 HOH B 622 SITE 1 AC7 11 ASP C 48 PHE C 58 TYR C 72 GLY C 115 SITE 2 AC7 11 ARG C 116 THR C 194 TYR C 195 HOH C 230 SITE 3 AC7 11 HOH C 231 HOH C 471 HOH C 472 SITE 1 AC8 16 ASP D 46 ASP D 48 PHE D 58 TYR D 72 SITE 2 AC8 16 LEU D 73 GLY D 115 ARG D 116 LYS D 154 SITE 3 AC8 16 THR D 194 TYR D 195 HOH D 339 HOH D 340 SITE 4 AC8 16 HOH D 430 HOH D 473 HOH D 475 HOH D 476 CRYST1 70.710 84.300 149.830 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006674 0.00000