HEADER DNA BINDING PROTEIN 21-MAR-05 1Z61 OBSLTE 19-APR-05 1Z61 1ZAE TITLE SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PHI29 TITLE 2 REPLICATION ORGANIZER P16.7C COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARLY PROTEIN GP16.7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: P16.7C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE PHI-29; SOURCE 3 ORGANISM_COMMON: VIRUSES; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PHI-29 REPLICATION, NONSPECIFIC DNA BINDING PROTEIN, KEYWDS 2 HELICAL DIMER EXPDTA NMR, 25 STRUCTURES AUTHOR J.L.ASENSIO,A.ALBERT,D.MUNOZ-ESPIN,C.GONZALEZ,J.HERMOSO, AUTHOR 2 L.VILLAR,J.JIMENEZ-BARBERO,M.SALAS,W.J.J.MEIJER REVDAT 2 19-APR-05 1Z61 1 OBSLTE REVDAT 1 05-APR-05 1Z61 0 JRNL AUTH J.L.ASENSIO,A.ALBERT,D.MUNOZ-ESPIN,C.GONZALEZ, JRNL AUTH 2 J.HERMOSO,L.VILLAR,J.JIMENEZ-BARBERO,M.SALAS, JRNL AUTH 3 W.J.J.MEIJER JRNL TITL STRUCTURE OF THE FUNCTIONAL DOMAIN OF PHI 29 JRNL TITL 2 REPLICATION ORGANIZER: INSIGHTS INTO JRNL TITL 3 OLIGOMERIZATION AND DNA BINDING JRNL REF J.BIOL.CHEM. JRNL REFN ASTM JBCHA3 US ESSN 1083-351X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 5.0 REMARK 3 AUTHORS : KOLLMAN, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z61 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-2005. REMARK 100 THE RCSB ID CODE IS RCSB032342. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308; 308; 303; 298 REMARK 210 PH : 5.0; 7.0; 5.0; 5.0 REMARK 210 IONIC STRENGTH : 200MM NACL; 200MM NACL; 200MM REMARK 210 NACL; 200MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 400UM P16.7, 200MM NACL, 10MM REMARK 210 SODIUM PHOSPHATE BUFFER, 4MM REMARK 210 DTT AT PH 5.0; 800UM P16.7C, REMARK 210 200MM NACL, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER, 4MM DTT AT REMARK 210 PH 5.0; 400UM P16.7, 200MM REMARK 210 NACL, 10MM SODIUM PHOSPHATE REMARK 210 BUFFER, 4MM DTT AT PH 7.0; REMARK 210 800UM P16.7, 200MM NACL, 10MM REMARK 210 SODIUM PHOSPHATE BUFFER, 4MM REMARK 210 DTT AT PH 7.0; 400UM P16.7, REMARK 210 200MM NACL, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER, 4MM DTT AT REMARK 210 PH 5.0; 800UM P16.7, 200MM REMARK 210 NACL, 10MM SODIUM PHOSPHATE REMARK 210 BUFFER, 4MM DTT AT PH 5.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 126 -60.31 65.03 REMARK 500 1 ARG B 126 -64.65 67.69 REMARK 500 2 ARG A 126 -71.31 54.86 REMARK 500 2 ARG B 126 -60.81 70.46 REMARK 500 3 ARG A 126 -60.71 64.94 REMARK 500 3 ASN B 83 34.93 124.15 REMARK 500 3 ARG B 126 -63.73 63.28 REMARK 500 4 ARG A 126 -76.39 67.69 REMARK 500 4 ARG B 126 -40.25 71.82 REMARK 500 5 ARG A 126 -63.20 68.53 REMARK 500 5 ARG B 126 -53.40 63.05 REMARK 500 5 SER B 128 -112.31 48.53 REMARK 500 6 ARG A 126 -67.89 63.82 REMARK 500 6 THR B 65 124.29 58.43 REMARK 500 6 ARG B 126 -40.97 76.30 REMARK 500 7 ARG A 126 -54.09 68.42 REMARK 500 7 ARG B 126 -48.13 75.29 REMARK 500 8 ARG A 126 -66.71 64.69 REMARK 500 8 ARG B 126 -53.06 70.01 REMARK 500 9 ARG A 126 -67.15 63.98 REMARK 500 9 VAL B 66 -66.22 52.92 REMARK 500 9 SER B 128 -89.00 87.07 REMARK 500 10 ARG A 126 -78.63 61.73 REMARK 500 10 ARG B 126 -50.58 70.51 REMARK 500 11 ARG A 126 -62.77 65.97 REMARK 500 11 ARG B 126 -65.87 63.87 REMARK 500 12 VAL A 66 -45.78 57.48 REMARK 500 12 LYS A 123 124.79 62.19 REMARK 500 12 ARG A 126 -62.37 62.02 REMARK 500 12 ARG B 126 -38.41 73.27 REMARK 500 12 SER B 128 -137.00 109.97 REMARK 500 13 ARG A 126 -71.82 68.30 REMARK 500 13 ASN B 83 40.79 123.82 REMARK 500 14 ARG A 126 -77.19 57.96 REMARK 500 14 ARG B 126 -35.50 67.55 REMARK 500 14 SER B 128 -73.15 64.77 REMARK 500 15 LEU A 99 139.81 79.56 REMARK 500 15 ARG A 126 -63.45 65.64 REMARK 500 15 ARG B 126 -59.48 75.45 REMARK 500 16 ARG A 126 -69.57 67.92 REMARK 500 16 THR B 65 -52.63 63.01 REMARK 500 16 ARG B 126 -57.63 64.17 REMARK 500 17 ARG A 126 -58.73 65.40 REMARK 500 17 THR B 65 -61.10 69.24 REMARK 500 17 ARG B 126 -47.63 71.00 REMARK 500 18 ARG A 126 -67.72 59.62 REMARK 500 18 ARG B 126 -53.86 74.58 REMARK 500 19 ASN B 83 31.70 129.20 REMARK 500 19 ARG B 126 -49.28 68.51 REMARK 500 19 SER B 128 -99.12 46.04 REMARK 500 20 ARG A 126 -61.09 70.87 REMARK 500 20 SER B 128 -65.95 65.93 REMARK 500 21 ARG A 126 -61.42 83.07 REMARK 500 21 ARG B 126 -48.04 71.05 REMARK 500 22 ASN A 83 18.41 125.36 REMARK 500 22 ARG A 126 -67.00 56.26 REMARK 500 22 ARG B 126 -51.34 63.33 REMARK 500 23 ARG A 126 -56.97 71.71 REMARK 500 23 SER A 128 -56.78 72.22 REMARK 500 23 THR B 65 148.59 105.92 REMARK 500 23 ARG B 126 -57.99 68.43 REMARK 500 24 THR A 65 -58.00 66.53 REMARK 500 24 ARG A 126 -63.24 65.76 REMARK 500 24 VAL B 66 151.95 53.72 REMARK 500 24 LEU B 99 155.89 66.89 REMARK 500 24 ARG B 126 -49.86 83.01 REMARK 500 25 ARG A 126 -68.33 71.06 REMARK 500 25 THR B 65 -60.50 50.78 REMARK 500 25 ARG B 126 -63.25 61.61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 123 LEU A 124 1 142.62 REMARK 500 LYS A 123 LEU A 124 2 141.21 REMARK 500 ASP A 63 LYS A 64 5 -146.97 REMARK 500 ASN A 67 LEU A 68 7 -135.06 REMARK 500 LYS B 123 LEU B 124 8 149.73 REMARK 500 ASN A 67 LEU A 68 12 -114.09 REMARK 500 LYS B 123 LEU B 124 12 149.15 REMARK 500 LYS B 123 LEU B 124 15 148.64 REMARK 500 LYS A 123 LEU A 124 16 148.43 REMARK 500 LYS B 123 LEU B 124 17 148.81 REMARK 500 LYS A 123 LEU A 124 18 149.38 REMARK 500 ASN A 67 LEU A 68 19 146.00 REMARK 500 ASP B 63 LYS B 64 21 129.47 REMARK 500 LYS B 123 LEU B 124 21 144.16 REMARK 500 LYS A 123 LEU A 124 22 149.97 DBREF 1Z61 A 63 130 UNP P16517 VG67_BPPH2 63 130 DBREF 1Z61 B 63 130 UNP P16517 VG67_BPPH2 63 130 SEQADV 1Z61 HIS A 61 UNP P16517 CLONING ARTIFACT SEQADV 1Z61 MET A 62 UNP P16517 CLONING ARTIFACT SEQADV 1Z61 HIS B 61 UNP P16517 CLONING ARTIFACT SEQADV 1Z61 MET B 62 UNP P16517 CLONING ARTIFACT SEQRES 1 A 70 HIS MET ASP LYS THR VAL ASN LEU SER ALA CYS GLU VAL SEQRES 2 A 70 ALA VAL LEU ASP LEU TYR GLU GLN SER ASN ILE ARG ILE SEQRES 3 A 70 PRO SER ASP ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU SEQRES 4 A 70 GLN SER GLU GLN GLU VAL LEU ASN TYR ILE GLU THR GLN SEQRES 5 A 70 ARG THR TYR TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR SEQRES 6 A 70 ARG GLY SER LEU LYS SEQRES 1 B 70 HIS MET ASP LYS THR VAL ASN LEU SER ALA CYS GLU VAL SEQRES 2 B 70 ALA VAL LEU ASP LEU TYR GLU GLN SER ASN ILE ARG ILE SEQRES 3 B 70 PRO SER ASP ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU SEQRES 4 B 70 GLN SER GLU GLN GLU VAL LEU ASN TYR ILE GLU THR GLN SEQRES 5 B 70 ARG THR TYR TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR SEQRES 6 B 70 ARG GLY SER LEU LYS HELIX 1 1 SER A 69 SER A 82 1 14 HELIX 2 2 PRO A 87 ARG A 98 1 12 HELIX 3 3 SER A 101 LYS A 122 1 22 HELIX 4 4 SER B 69 SER B 82 1 14 HELIX 5 5 PRO B 87 ARG B 98 1 12 HELIX 6 6 SER B 101 LYS B 122 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1