data_1Z67 # _entry.id 1Z67 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Z67 RCSB RCSB032348 WWPDB D_1000032348 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC28208 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z67 _pdbx_database_status.recvd_initial_deposition_date 2005-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Maltseva, N.' 2 'Dementieva, I.' 3 'Clancy, S.' 4 'Collart, F.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif.' _citation.journal_abbrev Proteins _citation.journal_volume 65 _citation.page_first 509 _citation.page_last 513 _citation.year 2006 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16927377 _citation.pdbx_database_id_DOI 10.1002/prot.21054 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Maltseva, N.' 2 primary 'Dementieva, I.' 3 primary 'Clancy, S.' 4 primary 'Collart, F.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 1Z67 _cell.length_a 57.476 _cell.length_b 40.479 _cell.length_c 48.333 _cell.angle_alpha 90.00 _cell.angle_beta 93.78 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z67 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein S4005' 14234.623 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 156 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)GLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTN AVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEVSAQANNDLLSAG(MSE)ELLKGKLFR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSD LGQKLGVDTSTASSLLAEQLPKIIDALSPQGEVSAQANNDLLSAGMELLKGKLFR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC28208 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLY n 1 6 LEU n 1 7 PHE n 1 8 ASP n 1 9 GLU n 1 10 VAL n 1 11 VAL n 1 12 GLY n 1 13 ALA n 1 14 PHE n 1 15 LEU n 1 16 LYS n 1 17 GLY n 1 18 ASP n 1 19 ALA n 1 20 GLY n 1 21 LYS n 1 22 TYR n 1 23 GLN n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 SER n 1 28 TRP n 1 29 VAL n 1 30 GLU n 1 31 GLU n 1 32 GLN n 1 33 GLY n 1 34 GLY n 1 35 ILE n 1 36 GLN n 1 37 VAL n 1 38 LEU n 1 39 LEU n 1 40 GLU n 1 41 LYS n 1 42 LEU n 1 43 GLN n 1 44 SER n 1 45 GLY n 1 46 GLY n 1 47 LEU n 1 48 GLY n 1 49 ALA n 1 50 ILE n 1 51 LEU n 1 52 SER n 1 53 THR n 1 54 TRP n 1 55 LEU n 1 56 SER n 1 57 ASN n 1 58 GLN n 1 59 GLN n 1 60 ARG n 1 61 ASN n 1 62 GLN n 1 63 SER n 1 64 VAL n 1 65 SER n 1 66 GLY n 1 67 GLU n 1 68 GLN n 1 69 LEU n 1 70 GLU n 1 71 SER n 1 72 ALA n 1 73 LEU n 1 74 GLY n 1 75 THR n 1 76 ASN n 1 77 ALA n 1 78 VAL n 1 79 SER n 1 80 ASP n 1 81 LEU n 1 82 GLY n 1 83 GLN n 1 84 LYS n 1 85 LEU n 1 86 GLY n 1 87 VAL n 1 88 ASP n 1 89 THR n 1 90 SER n 1 91 THR n 1 92 ALA n 1 93 SER n 1 94 SER n 1 95 LEU n 1 96 LEU n 1 97 ALA n 1 98 GLU n 1 99 GLN n 1 100 LEU n 1 101 PRO n 1 102 LYS n 1 103 ILE n 1 104 ILE n 1 105 ASP n 1 106 ALA n 1 107 LEU n 1 108 SER n 1 109 PRO n 1 110 GLN n 1 111 GLY n 1 112 GLU n 1 113 VAL n 1 114 SER n 1 115 ALA n 1 116 GLN n 1 117 ALA n 1 118 ASN n 1 119 ASN n 1 120 ASP n 1 121 LEU n 1 122 LEU n 1 123 SER n 1 124 ALA n 1 125 GLY n 1 126 MSE n 1 127 GLU n 1 128 LEU n 1 129 LEU n 1 130 LYS n 1 131 GLY n 1 132 LYS n 1 133 LEU n 1 134 PHE n 1 135 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Shigella _entity_src_gen.pdbx_gene_src_gene yidB _entity_src_gen.gene_src_species 'Shigella flexneri' _entity_src_gen.gene_src_strain 2457T _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri 2a' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198215 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q83IZ7_SHIFL _struct_ref.pdbx_db_accession Q83IZ7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQ KLGVDTSTASSLLAEQLPKIIDALSPQGEVSAQANNDLLSAGMELLKGKLFR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z67 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 135 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q83IZ7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 132 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 132 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z67 SER A 1 ? UNP Q83IZ7 ? ? 'CLONING ARTIFACT' -2 1 1 1Z67 ASN A 2 ? UNP Q83IZ7 ? ? 'CLONING ARTIFACT' -1 2 1 1Z67 ALA A 3 ? UNP Q83IZ7 ? ? 'CLONING ARTIFACT' 0 3 1 1Z67 MSE A 4 ? UNP Q83IZ7 MET 1 'MODIFIED RESIDUE' 1 4 1 1Z67 MSE A 126 ? UNP Q83IZ7 MET 123 'MODIFIED RESIDUE' 123 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z67 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.0 _exptl_crystal.density_percent_sol 37.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.1 M Bis-Tris, 2 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2005-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97934 # _reflns.entry_id 1Z67 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 40 _reflns.number_all 17111 _reflns.number_obs 17111 _reflns.percent_possible_obs 86.5 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 26.5 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.14 _reflns_shell.pdbx_redundancy 1.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 291 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Z67 _refine.ls_number_reflns_obs 17111 _refine.ls_number_reflns_all 17111 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 86.50 _refine.ls_R_factor_obs 0.1643 _refine.ls_R_factor_all 0.1643 _refine.ls_R_factor_R_work 0.1617 _refine.ls_R_factor_R_free 0.2079 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1739 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.941 _refine.aniso_B[1][1] 0.62 _refine.aniso_B[2][2] 0.57 _refine.aniso_B[3][3] -1.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.18 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method ? _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, ALL DATA WERE USED IN FINAL ROUND OF REFINEMENT. R-FACTOR-ALL CORRESPONDS TO DEPOSITED FILE. R-WORK AND R-FREE FACTORS ARE TAKEN FROM SECOND TO LAST ROUND OF REFINEMENT WHICH USED TEST DATA SET. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.106 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.037 _refine.overall_SU_B 2.090 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 939 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 1096 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1024 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.427 1.976 ? 1386 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.030 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.405 28.235 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.390 15.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.281 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 741 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.225 0.200 ? 495 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 728 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.147 0.200 ? 107 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.190 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.172 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.440 1.500 ? 639 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.166 2.000 ? 1034 'X-RAY DIFFRACTION' ? r_scbond_it 3.084 3.000 ? 396 'X-RAY DIFFRACTION' ? r_scangle_it 4.393 4.500 ? 352 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.958 3.000 ? 1035 'X-RAY DIFFRACTION' ? r_sphericity_free 5.690 3.000 ? 157 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.849 3.000 ? 1015 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.451 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_R_work 414 _refine_ls_shell.R_factor_R_work 0.183 _refine_ls_shell.percent_reflns_obs 28.59 _refine_ls_shell.R_factor_R_free 0.29 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_obs 414 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Z67 _struct.title 'Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri' _struct.pdbx_descriptor 'hypothetical protein S4005' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z67 _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;structural genomics, hypothetical protein, Shigella flexneri, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Unknown Function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 6 ? GLY A 17 ? LEU A 3 GLY A 14 1 ? 12 HELX_P HELX_P2 2 GLY A 20 ? GLN A 32 ? GLY A 17 GLN A 29 1 ? 13 HELX_P HELX_P3 3 GLY A 34 ? GLY A 45 ? GLY A 31 GLY A 42 1 ? 12 HELX_P HELX_P4 4 LEU A 47 ? SER A 56 ? LEU A 44 SER A 53 1 ? 10 HELX_P HELX_P5 5 SER A 65 ? GLY A 74 ? SER A 62 GLY A 71 1 ? 10 HELX_P HELX_P6 6 GLY A 74 ? GLY A 86 ? GLY A 71 GLY A 83 1 ? 13 HELX_P HELX_P7 7 ASP A 88 ? LEU A 107 ? ASP A 85 LEU A 104 1 ? 20 HELX_P HELX_P8 8 ASP A 120 ? PHE A 134 ? ASP A 117 PHE A 131 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 125 C ? ? ? 1_555 A MSE 126 N ? ? A GLY 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 126 C ? ? ? 1_555 A GLU 127 N ? ? A MSE 123 A GLU 124 1_555 ? ? ? ? ? ? ? 1.342 ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 A ASP 80 OD1 ? ? A NA 201 A ASP 77 1_555 ? ? ? ? ? ? ? 2.450 ? metalc2 metalc ? ? B NA . NA ? ? ? 1_555 A SER 79 OG B ? A NA 201 A SER 76 1_555 ? ? ? ? ? ? ? 2.553 ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 A ASN 76 OD1 B ? A NA 201 A ASN 73 1_555 ? ? ? ? ? ? ? 2.585 ? metalc4 metalc ? ? A GLN 83 OE1 A ? ? 1_555 B NA . NA ? ? A GLN 80 A NA 201 1_555 ? ? ? ? ? ? ? 2.851 ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 C HOH . O ? ? A NA 201 A HOH 303 1_555 ? ? ? ? ? ? ? 2.682 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 36 ? GLN A 33 . ? 4_546 ? 2 AC1 6 ASN A 76 ? ASN A 73 . ? 1_555 ? 3 AC1 6 SER A 79 ? SER A 76 . ? 1_555 ? 4 AC1 6 ASP A 80 ? ASP A 77 . ? 1_555 ? 5 AC1 6 GLN A 83 ? GLN A 80 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 303 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z67 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z67 _atom_sites.fract_transf_matrix[1][1] 0.017399 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001150 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020735 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 GLY 5 2 ? ? ? A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 PHE 7 4 4 PHE PHE A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 LYS 16 13 13 LYS LYS A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 ILE 25 22 22 ILE ILE A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 SER 27 24 24 SER SER A . n A 1 28 TRP 28 25 25 TRP TRP A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 GLN 32 29 29 GLN GLN A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 GLY 34 31 31 GLY GLY A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 GLN 36 33 33 GLN GLN A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 GLN 43 40 40 GLN GLN A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 GLY 46 43 43 GLY GLY A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 GLY 48 45 45 GLY GLY A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 ILE 50 47 47 ILE ILE A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 SER 52 49 49 SER SER A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 TRP 54 51 51 TRP TRP A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 ASN 57 54 54 ASN ASN A . n A 1 58 GLN 58 55 55 GLN GLN A . n A 1 59 GLN 59 56 56 GLN GLN A . n A 1 60 ARG 60 57 57 ARG ARG A . n A 1 61 ASN 61 58 58 ASN ASN A . n A 1 62 GLN 62 59 59 GLN GLN A . n A 1 63 SER 63 60 60 SER SER A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 SER 65 62 62 SER SER A . n A 1 66 GLY 66 63 63 GLY GLY A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 GLN 68 65 65 GLN GLN A . n A 1 69 LEU 69 66 66 LEU LEU A . n A 1 70 GLU 70 67 67 GLU GLU A . n A 1 71 SER 71 68 68 SER SER A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 ASN 76 73 73 ASN ASN A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 GLY 86 83 83 GLY GLY A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 THR 89 86 86 THR THR A . n A 1 90 SER 90 87 87 SER SER A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 ALA 97 94 94 ALA ALA A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 GLN 99 96 96 GLN GLN A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 PRO 101 98 98 PRO PRO A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 ILE 104 101 101 ILE ILE A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 VAL 113 110 110 VAL VAL A . n A 1 114 SER 114 111 ? ? ? A . n A 1 115 ALA 115 112 ? ? ? A . n A 1 116 GLN 116 113 113 GLN GLN A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 ASN 118 115 115 ASN ASN A . n A 1 119 ASN 119 116 116 ASN ASN A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 MSE 126 123 123 MSE MSE A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 LEU 128 125 125 LEU LEU A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 LYS 130 127 127 LYS LYS A . n A 1 131 GLY 131 128 128 GLY GLY A . n A 1 132 LYS 132 129 129 LYS LYS A . n A 1 133 LEU 133 130 130 LEU LEU A . n A 1 134 PHE 134 131 131 PHE PHE A . n A 1 135 ARG 135 132 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 126 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 123 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 274 ? C HOH . 2 1 A HOH 311 ? C HOH . 3 1 A HOH 319 ? C HOH . 4 1 A HOH 339 ? C HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 80 ? A ASP 77 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OG B A SER 79 ? A SER 76 ? 1_555 111.0 ? 2 OD1 ? A ASP 80 ? A ASP 77 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OD1 B A ASN 76 ? A ASN 73 ? 1_555 103.2 ? 3 OG B A SER 79 ? A SER 76 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OD1 B A ASN 76 ? A ASN 73 ? 1_555 87.7 ? 4 OD1 ? A ASP 80 ? A ASP 77 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OE1 A A GLN 83 ? A GLN 80 ? 1_555 103.8 ? 5 OG B A SER 79 ? A SER 76 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OE1 A A GLN 83 ? A GLN 80 ? 1_555 85.3 ? 6 OD1 B A ASN 76 ? A ASN 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OE1 A A GLN 83 ? A GLN 80 ? 1_555 152.8 ? 7 OD1 ? A ASP 80 ? A ASP 77 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? C HOH . ? A HOH 303 ? 1_555 148.3 ? 8 OG B A SER 79 ? A SER 76 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? C HOH . ? A HOH 303 ? 1_555 90.7 ? 9 OD1 B A ASN 76 ? A ASN 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? C HOH . ? A HOH 303 ? 1_555 53.2 ? 10 OE1 A A GLN 83 ? A GLN 80 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? C HOH . ? A HOH 303 ? 1_555 100.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 MLPHARE phasing . ? 5 DM phasing . ? 6 SOLVE phasing . ? 7 RESOLVE phasing . ? 8 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S).AUTHOR STATES THAT BIOLOGICAL MOLECULE FOR THE PROTEIN IS NOT YET KNOWN. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A GLY 2 ? A GLY 5 6 1 Y 1 A SER 111 ? A SER 114 7 1 Y 1 A ALA 112 ? A ALA 115 8 1 Y 1 A ARG 132 ? A ARG 135 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 201 NA NA A . C 3 HOH 1 202 1 HOH HOH A . C 3 HOH 2 203 2 HOH HOH A . C 3 HOH 3 204 3 HOH HOH A . C 3 HOH 4 205 4 HOH HOH A . C 3 HOH 5 206 5 HOH HOH A . C 3 HOH 6 207 6 HOH HOH A . C 3 HOH 7 208 7 HOH HOH A . C 3 HOH 8 209 8 HOH HOH A . C 3 HOH 9 210 9 HOH HOH A . C 3 HOH 10 211 10 HOH HOH A . C 3 HOH 11 212 11 HOH HOH A . C 3 HOH 12 213 12 HOH HOH A . C 3 HOH 13 214 13 HOH HOH A . C 3 HOH 14 215 14 HOH HOH A . C 3 HOH 15 216 15 HOH HOH A . C 3 HOH 16 217 16 HOH HOH A . C 3 HOH 17 218 17 HOH HOH A . C 3 HOH 18 219 18 HOH HOH A . C 3 HOH 19 220 19 HOH HOH A . C 3 HOH 20 221 20 HOH HOH A . C 3 HOH 21 222 21 HOH HOH A . C 3 HOH 22 223 22 HOH HOH A . C 3 HOH 23 224 23 HOH HOH A . C 3 HOH 24 225 24 HOH HOH A . C 3 HOH 25 226 25 HOH HOH A . C 3 HOH 26 227 26 HOH HOH A . C 3 HOH 27 228 27 HOH HOH A . C 3 HOH 28 229 28 HOH HOH A . C 3 HOH 29 230 29 HOH HOH A . C 3 HOH 30 231 30 HOH HOH A . C 3 HOH 31 232 31 HOH HOH A . C 3 HOH 32 233 32 HOH HOH A . C 3 HOH 33 234 33 HOH HOH A . C 3 HOH 34 235 34 HOH HOH A . C 3 HOH 35 236 35 HOH HOH A . C 3 HOH 36 237 36 HOH HOH A . C 3 HOH 37 238 37 HOH HOH A . C 3 HOH 38 239 38 HOH HOH A . C 3 HOH 39 240 39 HOH HOH A . C 3 HOH 40 241 40 HOH HOH A . C 3 HOH 41 242 41 HOH HOH A . C 3 HOH 42 243 42 HOH HOH A . C 3 HOH 43 244 43 HOH HOH A . C 3 HOH 44 245 44 HOH HOH A . C 3 HOH 45 246 45 HOH HOH A . C 3 HOH 46 247 46 HOH HOH A . C 3 HOH 47 248 47 HOH HOH A . C 3 HOH 48 249 48 HOH HOH A . C 3 HOH 49 250 49 HOH HOH A . C 3 HOH 50 251 50 HOH HOH A . C 3 HOH 51 252 51 HOH HOH A . C 3 HOH 52 253 52 HOH HOH A . C 3 HOH 53 254 53 HOH HOH A . C 3 HOH 54 255 54 HOH HOH A . C 3 HOH 55 256 55 HOH HOH A . C 3 HOH 56 257 56 HOH HOH A . C 3 HOH 57 258 57 HOH HOH A . C 3 HOH 58 259 58 HOH HOH A . C 3 HOH 59 260 59 HOH HOH A . C 3 HOH 60 261 60 HOH HOH A . C 3 HOH 61 262 61 HOH HOH A . C 3 HOH 62 263 62 HOH HOH A . C 3 HOH 63 264 63 HOH HOH A . C 3 HOH 64 265 64 HOH HOH A . C 3 HOH 65 266 65 HOH HOH A . C 3 HOH 66 267 66 HOH HOH A . C 3 HOH 67 268 67 HOH HOH A . C 3 HOH 68 269 68 HOH HOH A . C 3 HOH 69 270 69 HOH HOH A . C 3 HOH 70 271 70 HOH HOH A . C 3 HOH 71 272 71 HOH HOH A . C 3 HOH 72 273 72 HOH HOH A . C 3 HOH 73 274 73 HOH HOH A . C 3 HOH 74 275 74 HOH HOH A . C 3 HOH 75 276 75 HOH HOH A . C 3 HOH 76 277 76 HOH HOH A . C 3 HOH 77 278 77 HOH HOH A . C 3 HOH 78 279 78 HOH HOH A . C 3 HOH 79 280 79 HOH HOH A . C 3 HOH 80 281 80 HOH HOH A . C 3 HOH 81 282 81 HOH HOH A . C 3 HOH 82 283 82 HOH HOH A . C 3 HOH 83 284 83 HOH HOH A . C 3 HOH 84 285 84 HOH HOH A . C 3 HOH 85 286 85 HOH HOH A . C 3 HOH 86 287 86 HOH HOH A . C 3 HOH 87 288 87 HOH HOH A . C 3 HOH 88 289 88 HOH HOH A . C 3 HOH 89 290 89 HOH HOH A . C 3 HOH 90 291 90 HOH HOH A . C 3 HOH 91 292 91 HOH HOH A . C 3 HOH 92 293 92 HOH HOH A . C 3 HOH 93 294 93 HOH HOH A . C 3 HOH 94 295 94 HOH HOH A . C 3 HOH 95 296 95 HOH HOH A . C 3 HOH 96 297 96 HOH HOH A . C 3 HOH 97 298 97 HOH HOH A . C 3 HOH 98 299 98 HOH HOH A . C 3 HOH 99 300 99 HOH HOH A . C 3 HOH 100 301 100 HOH HOH A . C 3 HOH 101 302 101 HOH HOH A . C 3 HOH 102 303 102 HOH HOH A . C 3 HOH 103 304 103 HOH HOH A . C 3 HOH 104 305 104 HOH HOH A . C 3 HOH 105 306 105 HOH HOH A . C 3 HOH 106 307 106 HOH HOH A . C 3 HOH 107 308 107 HOH HOH A . C 3 HOH 108 309 108 HOH HOH A . C 3 HOH 109 310 109 HOH HOH A . C 3 HOH 110 311 110 HOH HOH A . C 3 HOH 111 312 111 HOH HOH A . C 3 HOH 112 313 112 HOH HOH A . C 3 HOH 113 314 113 HOH HOH A . C 3 HOH 114 315 114 HOH HOH A . C 3 HOH 115 316 115 HOH HOH A . C 3 HOH 116 317 116 HOH HOH A . C 3 HOH 117 318 117 HOH HOH A . C 3 HOH 118 319 118 HOH HOH A . C 3 HOH 119 320 119 HOH HOH A . C 3 HOH 120 321 120 HOH HOH A . C 3 HOH 121 322 121 HOH HOH A . C 3 HOH 122 323 122 HOH HOH A . C 3 HOH 123 324 123 HOH HOH A . C 3 HOH 124 325 124 HOH HOH A . C 3 HOH 125 326 125 HOH HOH A . C 3 HOH 126 327 126 HOH HOH A . C 3 HOH 127 328 127 HOH HOH A . C 3 HOH 128 329 128 HOH HOH A . C 3 HOH 129 330 129 HOH HOH A . C 3 HOH 130 331 130 HOH HOH A . C 3 HOH 131 332 131 HOH HOH A . C 3 HOH 132 333 132 HOH HOH A . C 3 HOH 133 334 133 HOH HOH A . C 3 HOH 134 335 134 HOH HOH A . C 3 HOH 135 336 135 HOH HOH A . C 3 HOH 136 337 136 HOH HOH A . C 3 HOH 137 338 137 HOH HOH A . C 3 HOH 138 339 138 HOH HOH A . C 3 HOH 139 340 139 HOH HOH A . C 3 HOH 140 341 140 HOH HOH A . C 3 HOH 141 342 141 HOH HOH A . C 3 HOH 142 343 142 HOH HOH A . C 3 HOH 143 344 143 HOH HOH A . C 3 HOH 144 345 144 HOH HOH A . C 3 HOH 145 346 145 HOH HOH A . C 3 HOH 146 347 146 HOH HOH A . C 3 HOH 147 348 147 HOH HOH A . C 3 HOH 148 349 148 HOH HOH A . C 3 HOH 149 350 149 HOH HOH A . C 3 HOH 150 351 150 HOH HOH A . C 3 HOH 151 352 151 HOH HOH A . C 3 HOH 152 353 152 HOH HOH A . C 3 HOH 153 354 153 HOH HOH A . C 3 HOH 154 355 154 HOH HOH A . C 3 HOH 155 356 155 HOH HOH A . C 3 HOH 156 357 156 HOH HOH A . #