HEADER TRANSFERASE 23-MAR-05 1Z6Q TITLE GLYCOGEN PHOSPHORYLASE WITH INHIBITOR IN THE AMP SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN PHOSPHORYLASE, MUSCLE FORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLYCOGEN PHOSPHORYLASE; COMPND 5 SYNONYM: MYOPHOSPHORYLASE; COMPND 6 EC: 2.4.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 OTHER_DETAILS: GENE PYGM KEYWDS GLYCOGEN METABOLISM; GLYCOGEN PHOSPHORYLASE B; INHIBITION; KEYWDS 2 ALLOSTERIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KRISTIANSEN,B.ANDERSEN,L.F.IVERSEN,N.WESTERGAARD REVDAT 3 13-JUL-11 1Z6Q 1 VERSN REVDAT 2 24-FEB-09 1Z6Q 1 VERSN REVDAT 1 12-APR-05 1Z6Q 0 JRNL AUTH M.KRISTIANSEN,B.ANDERSEN,L.F.IVERSEN,N.WESTERGAARD JRNL TITL IDENTIFICATION, SYNTHESIS AND CHRACTERIZATION OF NEW JRNL TITL 2 GLYCOGEN PHOSPHORYLASE INHIBITORS BINDING TO THE ALLOSTERIC JRNL TITL 3 AMP SITE JRNL REF J.MED.CHEM. V. 47 3537 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 15214781 JRNL DOI 10.1021/JM031121N REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 60467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3023 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 BOND ANGLES (DEGREES) : 3.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BES, EDTA, DTT, SPERMDINE, PH 6.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.95000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.85000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.95000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.80000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 251 REMARK 465 PHE A 252 REMARK 465 ASN A 253 REMARK 465 LEU A 254 REMARK 465 LYS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 VAL A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 317 REMARK 465 CYS A 318 REMARK 465 ARG A 319 REMARK 465 ASP A 320 REMARK 465 PRO A 321 REMARK 465 VAL A 322 REMARK 465 ALA A 836 REMARK 465 PRO A 837 REMARK 465 ASP A 838 REMARK 465 GLU A 839 REMARK 465 LYS A 840 REMARK 465 ILE A 841 REMARK 465 PRO A 842 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 36 CG HIS A 36 CD2 0.058 REMARK 500 SER A 146 CB SER A 146 OG 0.114 REMARK 500 GLU A 177 CD GLU A 177 OE2 -0.067 REMARK 500 ARG A 193 CZ ARG A 193 NH1 -0.097 REMARK 500 GLU A 195 CD GLU A 195 OE2 0.084 REMARK 500 HIS A 201 CG HIS A 201 CD2 0.057 REMARK 500 SER A 210 CB SER A 210 OG 0.078 REMARK 500 SER A 276 CB SER A 276 OG 0.097 REMARK 500 HIS A 399 CG HIS A 399 CD2 0.071 REMARK 500 SER A 429 CB SER A 429 OG 0.097 REMARK 500 HIS A 443 CG HIS A 443 CD2 0.082 REMARK 500 HIS A 477 CG HIS A 477 CD2 0.064 REMARK 500 GLU A 510 CG GLU A 510 CD 0.091 REMARK 500 HIS A 571 CG HIS A 571 CD2 0.062 REMARK 500 HIS A 582 CG HIS A 582 CD2 0.066 REMARK 500 SER A 674 CB SER A 674 OG 0.082 REMARK 500 SER A 747 CB SER A 747 OG 0.093 REMARK 500 HIS A 768 CG HIS A 768 CD2 0.060 REMARK 500 SER A 813 CB SER A 813 OG 0.080 REMARK 500 GLU A 828 CG GLU A 828 CD 0.099 REMARK 500 SER A 830 CB SER A 830 OG 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 66 CD - NE - CZ ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 81 CD - NE - CZ ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 81 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ALA A 129 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 TYR A 161 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU A 195 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 GLU A 195 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 234 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 242 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 SER A 245 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 280 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 280 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 283 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 ALA A 302 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 310 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 SER A 313 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 355 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 358 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ALA A 383 CB - CA - C ANGL. DEV. = 9.6 DEGREES REMARK 500 LEU A 391 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 398 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 398 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 404 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 409 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 424 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 424 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 427 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 427 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 489 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 519 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 519 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 532 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR A 548 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 551 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PHE A 563 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 13 92.30 -61.14 REMARK 500 ALA A 19 66.44 -102.02 REMARK 500 LEU A 131 38.27 -84.19 REMARK 500 TYR A 203 -131.93 68.85 REMARK 500 ARG A 234 31.90 39.28 REMARK 500 SER A 314 -75.03 -109.57 REMARK 500 LYS A 315 -130.21 -102.29 REMARK 500 ASN A 325 -80.15 -48.44 REMARK 500 ASP A 339 -172.33 66.13 REMARK 500 LEU A 396 54.61 -147.41 REMARK 500 ALA A 456 149.62 -178.24 REMARK 500 THR A 466 -92.64 -133.07 REMARK 500 ARG A 489 -75.05 -62.88 REMARK 500 LEU A 492 -59.97 -144.49 REMARK 500 ASP A 514 67.27 -159.98 REMARK 500 LYS A 554 29.83 41.92 REMARK 500 ASN A 560 68.23 -102.94 REMARK 500 LYS A 568 160.28 168.55 REMARK 500 SER A 674 -65.11 -152.82 REMARK 500 THR A 676 -27.31 -141.08 REMARK 500 MET A 692 74.66 -66.34 REMARK 500 SER A 751 66.07 -168.20 REMARK 500 HIS A 768 37.16 -147.99 REMARK 500 ILE A 824 -63.74 -109.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 52 0.10 SIDE CHAIN REMARK 500 ARG A 66 0.25 SIDE CHAIN REMARK 500 ARG A 81 0.23 SIDE CHAIN REMARK 500 TYR A 90 0.07 SIDE CHAIN REMARK 500 TYR A 157 0.08 SIDE CHAIN REMARK 500 ARG A 160 0.13 SIDE CHAIN REMARK 500 ARG A 205 0.12 SIDE CHAIN REMARK 500 ARG A 292 0.08 SIDE CHAIN REMARK 500 ARG A 310 0.13 SIDE CHAIN REMARK 500 TYR A 374 0.10 SIDE CHAIN REMARK 500 TYR A 524 0.07 SIDE CHAIN REMARK 500 TYR A 548 0.12 SIDE CHAIN REMARK 500 ARG A 601 0.11 SIDE CHAIN REMARK 500 ARG A 720 0.09 SIDE CHAIN REMARK 500 ARG A 831 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 100 23.9 L L OUTSIDE RANGE REMARK 500 PHE A 326 21.1 L L OUTSIDE RANGE REMARK 500 ILE A 462 24.4 L L OUTSIDE RANGE REMARK 500 ARG A 489 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 195 A 843 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z6P RELATED DB: PDB DBREF 1Z6Q A 1 842 UNP P00489 PHS2_RABIT 1 842 SEQADV 1Z6Q ILE A 380 UNP P00489 LEU 380 CONFLICT SEQADV 1Z6Q LLP A 680 UNP P00489 LYS 680 MODIFIED RESIDUE SEQRES 1 A 842 SER ARG PRO LEU SER ASP GLN GLU LYS ARG LYS GLN ILE SEQRES 2 A 842 SER VAL ARG GLY LEU ALA GLY VAL GLU ASN VAL THR GLU SEQRES 3 A 842 LEU LYS LYS ASN PHE ASN ARG HIS LEU HIS PHE THR LEU SEQRES 4 A 842 VAL LYS ASP ARG ASN VAL ALA THR PRO ARG ASP TYR TYR SEQRES 5 A 842 PHE ALA LEU ALA HIS THR VAL ARG ASP HIS LEU VAL GLY SEQRES 6 A 842 ARG TRP ILE ARG THR GLN GLN HIS TYR TYR GLU LYS ASP SEQRES 7 A 842 PRO LYS ARG ILE TYR TYR LEU SER LEU GLU PHE TYR MET SEQRES 8 A 842 GLY ARG THR LEU GLN ASN THR MET VAL ASN LEU ALA LEU SEQRES 9 A 842 GLU ASN ALA CYS ASP GLU ALA THR TYR GLN LEU GLY LEU SEQRES 10 A 842 ASP MET GLU GLU LEU GLU GLU ILE GLU GLU ASP ALA GLY SEQRES 11 A 842 LEU GLY ASN GLY GLY LEU GLY ARG LEU ALA ALA CYS PHE SEQRES 12 A 842 LEU ASP SER MET ALA THR LEU GLY LEU ALA ALA TYR GLY SEQRES 13 A 842 TYR GLY ILE ARG TYR GLU PHE GLY ILE PHE ASN GLN LYS SEQRES 14 A 842 ILE CYS GLY GLY TRP GLN MET GLU GLU ALA ASP ASP TRP SEQRES 15 A 842 LEU ARG TYR GLY ASN PRO TRP GLU LYS ALA ARG PRO GLU SEQRES 16 A 842 PHE THR LEU PRO VAL HIS PHE TYR GLY ARG VAL GLU HIS SEQRES 17 A 842 THR SER GLN GLY ALA LYS TRP VAL ASP THR GLN VAL VAL SEQRES 18 A 842 LEU ALA MET PRO TYR ASP THR PRO VAL PRO GLY TYR ARG SEQRES 19 A 842 ASN ASN VAL VAL ASN THR MET ARG LEU TRP SER ALA LYS SEQRES 20 A 842 ALA PRO ASN ASP PHE ASN LEU LYS ASP PHE ASN VAL GLY SEQRES 21 A 842 GLY TYR ILE GLN ALA VAL LEU ASP ARG ASN LEU ALA GLU SEQRES 22 A 842 ASN ILE SER ARG VAL LEU TYR PRO ASN ASP ASN PHE PHE SEQRES 23 A 842 GLU GLY LYS GLU LEU ARG LEU LYS GLN GLU TYR PHE VAL SEQRES 24 A 842 VAL ALA ALA THR LEU GLN ASP ILE ILE ARG ARG PHE LYS SEQRES 25 A 842 SER SER LYS PHE GLY CYS ARG ASP PRO VAL ARG THR ASN SEQRES 26 A 842 PHE ASP ALA PHE PRO ASP LYS VAL ALA ILE GLN LEU ASN SEQRES 27 A 842 ASP THR HIS PRO SER LEU ALA ILE PRO GLU LEU MET ARG SEQRES 28 A 842 VAL LEU VAL ASP LEU GLU ARG LEU ASP TRP ASP LYS ALA SEQRES 29 A 842 TRP GLU VAL THR VAL LYS THR CYS ALA TYR THR ASN HIS SEQRES 30 A 842 THR VAL ILE PRO GLU ALA LEU GLU ARG TRP PRO VAL HIS SEQRES 31 A 842 LEU LEU GLU THR LEU LEU PRO ARG HIS LEU GLN ILE ILE SEQRES 32 A 842 TYR GLU ILE ASN GLN ARG PHE LEU ASN ARG VAL ALA ALA SEQRES 33 A 842 ALA PHE PRO GLY ASP VAL ASP ARG LEU ARG ARG MET SER SEQRES 34 A 842 LEU VAL GLU GLU GLY ALA VAL LYS ARG ILE ASN MET ALA SEQRES 35 A 842 HIS LEU CYS ILE ALA GLY SER HIS ALA VAL ASN GLY VAL SEQRES 36 A 842 ALA ARG ILE HIS SER GLU ILE LEU LYS LYS THR ILE PHE SEQRES 37 A 842 LYS ASP PHE TYR GLU LEU GLU PRO HIS LYS PHE GLN ASN SEQRES 38 A 842 LYS THR ASN GLY ILE THR PRO ARG ARG TRP LEU VAL LEU SEQRES 39 A 842 CYS ASN PRO GLY LEU ALA GLU ILE ILE ALA GLU ARG ILE SEQRES 40 A 842 GLY GLU GLU TYR ILE SER ASP LEU ASP GLN LEU ARG LYS SEQRES 41 A 842 LEU LEU SER TYR VAL ASP ASP GLU ALA PHE ILE ARG ASP SEQRES 42 A 842 VAL ALA LYS VAL LYS GLN GLU ASN LYS LEU LYS PHE ALA SEQRES 43 A 842 ALA TYR LEU GLU ARG GLU TYR LYS VAL HIS ILE ASN PRO SEQRES 44 A 842 ASN SER LEU PHE ASP VAL GLN VAL LYS ARG ILE HIS GLU SEQRES 45 A 842 TYR LYS ARG GLN LEU LEU ASN CYS LEU HIS VAL ILE THR SEQRES 46 A 842 LEU TYR ASN ARG ILE LYS LYS GLU PRO ASN LYS PHE VAL SEQRES 47 A 842 VAL PRO ARG THR VAL MET ILE GLY GLY LYS ALA ALA PRO SEQRES 48 A 842 GLY TYR HIS MET ALA LYS MET ILE ILE LYS LEU ILE THR SEQRES 49 A 842 ALA ILE GLY ASP VAL VAL ASN HIS ASP PRO VAL VAL GLY SEQRES 50 A 842 ASP ARG LEU ARG VAL ILE PHE LEU GLU ASN TYR ARG VAL SEQRES 51 A 842 SER LEU ALA GLU LYS VAL ILE PRO ALA ALA ASP LEU SER SEQRES 52 A 842 GLU GLN ILE SER THR ALA GLY THR GLU ALA SER GLY THR SEQRES 53 A 842 GLY ASN MET LLP PHE MET LEU ASN GLY ALA LEU THR ILE SEQRES 54 A 842 GLY THR MET ASP GLY ALA ASN VAL GLU MET ALA GLU GLU SEQRES 55 A 842 ALA GLY GLU GLU ASN PHE PHE ILE PHE GLY MET ARG VAL SEQRES 56 A 842 GLU ASP VAL ASP ARG LEU ASP GLN ARG GLY TYR ASN ALA SEQRES 57 A 842 GLN GLU TYR TYR ASP ARG ILE PRO GLU LEU ARG GLN ILE SEQRES 58 A 842 ILE GLU GLN LEU SER SER GLY PHE PHE SER PRO LYS GLN SEQRES 59 A 842 PRO ASP LEU PHE LYS ASP ILE VAL ASN MET LEU MET HIS SEQRES 60 A 842 HIS ASP ARG PHE LYS VAL PHE ALA ASP TYR GLU GLU TYR SEQRES 61 A 842 VAL LYS CYS GLN GLU ARG VAL SER ALA LEU TYR LYS ASN SEQRES 62 A 842 PRO ARG GLU TRP THR ARG MET VAL ILE ARG ASN ILE ALA SEQRES 63 A 842 THR SER GLY LYS PHE SER SER ASP ARG THR ILE ALA GLN SEQRES 64 A 842 TYR ALA ARG GLU ILE TRP GLY VAL GLU PRO SER ARG GLN SEQRES 65 A 842 ARG LEU PRO ALA PRO ASP GLU LYS ILE PRO MODRES 1Z6Q LLP A 680 LYS HET LLP A 680 24 HET 195 A 843 43 HETNAM LLP 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 LLP PYRIDIN-4-YLMETHANE) HETNAM 195 4-{2,4-BIS[(3-NITROBENZOYL)AMINO]PHENOXY}PHTHALIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H24 N3 O7 P FORMUL 2 195 C28 H18 N4 O11 HELIX 1 1 GLN A 7 ILE A 13 1 7 HELIX 2 2 SER A 14 GLY A 17 5 4 HELIX 3 3 GLY A 20 THR A 38 1 19 HELIX 4 4 THR A 47 ASP A 78 1 32 HELIX 5 5 THR A 94 ALA A 103 1 10 HELIX 6 6 LEU A 104 LEU A 115 1 12 HELIX 7 7 ASP A 118 GLU A 124 1 7 HELIX 8 8 GLY A 134 LEU A 150 1 17 HELIX 9 9 PRO A 194 THR A 197 5 4 HELIX 10 10 GLY A 261 ASP A 268 1 8 HELIX 11 11 ASP A 268 ASN A 274 1 7 HELIX 12 12 ILE A 275 ARG A 277 5 3 HELIX 13 13 LYS A 289 SER A 313 1 25 HELIX 14 14 ARG A 323 ALA A 328 1 6 HELIX 15 15 ALA A 328 LYS A 332 1 5 HELIX 16 16 LEU A 344 LEU A 356 1 13 HELIX 17 17 ASP A 360 THR A 371 1 12 HELIX 18 18 ILE A 380 LEU A 384 5 5 HELIX 19 19 VAL A 389 LEU A 396 1 8 HELIX 20 20 LEU A 396 PHE A 418 1 23 HELIX 21 21 ASP A 421 SER A 429 1 9 HELIX 22 22 MET A 441 SER A 449 1 9 HELIX 23 23 ALA A 456 THR A 466 1 11 HELIX 24 24 PHE A 468 GLU A 475 1 8 HELIX 25 25 ASN A 496 GLY A 508 1 13 HELIX 26 26 GLU A 509 VAL A 525 5 17 HELIX 27 27 ASP A 527 LYS A 554 1 28 HELIX 28 28 ARG A 575 GLU A 593 1 19 HELIX 29 29 TYR A 613 ASN A 631 1 19 HELIX 30 30 VAL A 636 ASP A 638 5 3 HELIX 31 31 ARG A 649 ILE A 657 1 9 HELIX 32 32 PRO A 658 ALA A 660 5 3 HELIX 33 33 THR A 676 ASN A 684 1 9 HELIX 34 34 ALA A 695 GLY A 704 1 10 HELIX 35 35 GLU A 705 PHE A 708 5 4 HELIX 36 36 ARG A 714 GLY A 725 1 12 HELIX 37 37 ASN A 727 ILE A 735 1 9 HELIX 38 38 ILE A 735 GLY A 748 1 14 HELIX 39 39 GLN A 754 LEU A 757 5 4 HELIX 40 40 PHE A 758 HIS A 768 1 11 HELIX 41 41 LYS A 772 LYS A 792 1 21 HELIX 42 42 ASN A 793 ALA A 806 1 14 HELIX 43 43 THR A 807 PHE A 811 5 5 HELIX 44 44 SER A 812 ILE A 824 1 13 SHEET 1 A 3 LYS A 191 ALA A 192 0 SHEET 2 A 3 GLN A 219 PRO A 231 -1 O ASP A 227 N LYS A 191 SHEET 3 A 3 LEU A 198 PHE A 202 -1 N PHE A 202 O GLN A 219 SHEET 1 B 9 LYS A 191 ALA A 192 0 SHEET 2 B 9 GLN A 219 PRO A 231 -1 O ASP A 227 N LYS A 191 SHEET 3 B 9 VAL A 238 LYS A 247 -1 O SER A 245 N MET A 224 SHEET 4 B 9 ALA A 154 ILE A 159 1 N GLY A 156 O ARG A 242 SHEET 5 B 9 ARG A 81 LEU A 85 1 N ILE A 82 O TYR A 155 SHEET 6 B 9 VAL A 333 ASN A 338 1 O ALA A 334 N TYR A 83 SHEET 7 B 9 CYS A 372 THR A 375 1 O ALA A 373 N LEU A 337 SHEET 8 B 9 ALA A 451 GLY A 454 1 O ALA A 451 N TYR A 374 SHEET 9 B 9 PHE A 479 ASN A 481 1 O GLN A 480 N VAL A 452 SHEET 1 C 2 PHE A 89 GLY A 92 0 SHEET 2 C 2 ALA A 129 LEU A 131 -1 O ALA A 129 N GLY A 92 SHEET 1 D 2 ASN A 167 CYS A 171 0 SHEET 2 D 2 TRP A 174 GLU A 178 -1 O TRP A 174 N CYS A 171 SHEET 1 E 2 ARG A 205 VAL A 206 0 SHEET 2 E 2 TRP A 215 VAL A 216 -1 O VAL A 216 N ARG A 205 SHEET 1 F 3 ARG A 386 PRO A 388 0 SHEET 2 F 3 ARG A 438 ASN A 440 -1 O ILE A 439 N TRP A 387 SHEET 3 F 3 VAL A 431 GLU A 432 -1 N GLU A 432 O ARG A 438 SHEET 1 G 6 LEU A 640 LEU A 645 0 SHEET 2 G 6 ARG A 601 GLY A 606 1 N VAL A 603 O ILE A 643 SHEET 3 G 6 LEU A 562 VAL A 567 1 N ASP A 564 O MET A 604 SHEET 4 G 6 LEU A 662 GLN A 665 1 O LEU A 662 N VAL A 565 SHEET 5 G 6 LEU A 687 GLY A 690 1 O LEU A 687 N SER A 663 SHEET 6 G 6 PHE A 709 ILE A 710 1 O PHE A 709 N GLY A 690 LINK C MET A 679 N LLP A 680 1555 1555 1.44 LINK C LLP A 680 N PHE A 681 1555 1555 1.36 SITE 1 AC1 18 VAL A 40 LYS A 41 ASP A 42 ARG A 43 SITE 2 AC1 18 ASN A 44 VAL A 45 TRP A 67 ILE A 68 SITE 3 AC1 18 GLN A 71 GLN A 72 TYR A 75 GLU A 76 SITE 4 AC1 18 ARG A 81 TYR A 155 LYS A 191 ARG A 193 SITE 5 AC1 18 ARG A 309 ARG A 310 CRYST1 127.500 127.500 115.800 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000