data_1Z77 # _entry.id 1Z77 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z77 pdb_00001z77 10.2210/pdb1z77/pdb RCSB RCSB032384 ? ? WWPDB D_1000032384 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC4542 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z77 _pdbx_database_status.recvd_initial_deposition_date 2005-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Koclega, K.D.' 1 ? 'Chruszcz, M.' 2 ? 'Zimmerman, M.D.' 3 ? 'Cymborowski, M.' 4 ? 'Kudritska, M.' 5 ? 'Minor, W.' 6 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 7 ? # _citation.id primary _citation.title 'Crystal structure of a transcriptional regulator TM1030 from Thermotoga maritima solved by an unusual MAD experiment.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 159 _citation.page_first 424 _citation.page_last 432 _citation.year 2007 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17588774 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2007.04.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koclega, K.D.' 1 ? primary 'Chruszcz, M.' 2 ? primary 'Zimmerman, M.D.' 3 ? primary 'Cymborowski, M.' 4 ? primary 'Evdokimova, E.' 5 ? primary 'Minor, W.' 6 0000-0001-7075-7090 # _cell.entry_id 1Z77 _cell.length_a 56.043 _cell.length_b 65.684 _cell.length_c 55.694 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Z77 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transcriptional regulator (TetR family)' 24213.879 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)LSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY(MSE)SVTEKLQKEFENFL (MSE)KNRNRDIFDF(MSE)ERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLA EDVTEEIALKFL(MSE)WFFSGFEEVYLRTYQGKPELLKRD(MSE)NTLVEEVKV(MSE)LRILKKG(MSE)TK ; _entity_poly.pdbx_seq_one_letter_code_can ;MLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFD FMERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSG FEEVYLRTYQGKPELLKRDMNTLVEEVKVMLRILKKGMTK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC4542 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LEU n 1 3 SER n 1 4 LYS n 1 5 ARG n 1 6 ASP n 1 7 ALA n 1 8 ILE n 1 9 LEU n 1 10 LYS n 1 11 ALA n 1 12 ALA n 1 13 VAL n 1 14 GLU n 1 15 VAL n 1 16 PHE n 1 17 GLY n 1 18 LYS n 1 19 LYS n 1 20 GLY n 1 21 TYR n 1 22 ASP n 1 23 ARG n 1 24 ALA n 1 25 THR n 1 26 THR n 1 27 ASP n 1 28 GLU n 1 29 ILE n 1 30 ALA n 1 31 GLU n 1 32 LYS n 1 33 ALA n 1 34 GLY n 1 35 VAL n 1 36 ALA n 1 37 LYS n 1 38 GLY n 1 39 LEU n 1 40 ILE n 1 41 PHE n 1 42 HIS n 1 43 TYR n 1 44 PHE n 1 45 LYS n 1 46 ASN n 1 47 LYS n 1 48 GLU n 1 49 GLU n 1 50 LEU n 1 51 TYR n 1 52 TYR n 1 53 GLN n 1 54 ALA n 1 55 TYR n 1 56 MSE n 1 57 SER n 1 58 VAL n 1 59 THR n 1 60 GLU n 1 61 LYS n 1 62 LEU n 1 63 GLN n 1 64 LYS n 1 65 GLU n 1 66 PHE n 1 67 GLU n 1 68 ASN n 1 69 PHE n 1 70 LEU n 1 71 MSE n 1 72 LYS n 1 73 ASN n 1 74 ARG n 1 75 ASN n 1 76 ARG n 1 77 ASP n 1 78 ILE n 1 79 PHE n 1 80 ASP n 1 81 PHE n 1 82 MSE n 1 83 GLU n 1 84 ARG n 1 85 TRP n 1 86 ILE n 1 87 GLU n 1 88 LYS n 1 89 LYS n 1 90 LEU n 1 91 GLU n 1 92 TYR n 1 93 SER n 1 94 ALA n 1 95 SER n 1 96 HIS n 1 97 PRO n 1 98 GLU n 1 99 GLU n 1 100 ALA n 1 101 ASP n 1 102 PHE n 1 103 LEU n 1 104 ILE n 1 105 THR n 1 106 LEU n 1 107 VAL n 1 108 SER n 1 109 VAL n 1 110 ASP n 1 111 GLU n 1 112 GLY n 1 113 LEU n 1 114 ARG n 1 115 LYS n 1 116 ARG n 1 117 ILE n 1 118 LEU n 1 119 LEU n 1 120 ASP n 1 121 LEU n 1 122 GLU n 1 123 LYS n 1 124 SER n 1 125 GLN n 1 126 ARG n 1 127 VAL n 1 128 PHE n 1 129 PHE n 1 130 ASP n 1 131 PHE n 1 132 VAL n 1 133 ARG n 1 134 GLU n 1 135 LYS n 1 136 LEU n 1 137 LYS n 1 138 ASP n 1 139 LEU n 1 140 ASP n 1 141 LEU n 1 142 ALA n 1 143 GLU n 1 144 ASP n 1 145 VAL n 1 146 THR n 1 147 GLU n 1 148 GLU n 1 149 ILE n 1 150 ALA n 1 151 LEU n 1 152 LYS n 1 153 PHE n 1 154 LEU n 1 155 MSE n 1 156 TRP n 1 157 PHE n 1 158 PHE n 1 159 SER n 1 160 GLY n 1 161 PHE n 1 162 GLU n 1 163 GLU n 1 164 VAL n 1 165 TYR n 1 166 LEU n 1 167 ARG n 1 168 THR n 1 169 TYR n 1 170 GLN n 1 171 GLY n 1 172 LYS n 1 173 PRO n 1 174 GLU n 1 175 LEU n 1 176 LEU n 1 177 LYS n 1 178 ARG n 1 179 ASP n 1 180 MSE n 1 181 ASN n 1 182 THR n 1 183 LEU n 1 184 VAL n 1 185 GLU n 1 186 GLU n 1 187 VAL n 1 188 LYS n 1 189 VAL n 1 190 MSE n 1 191 LEU n 1 192 ARG n 1 193 ILE n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 GLY n 1 198 MSE n 1 199 THR n 1 200 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X0C0_THEMA _struct_ref.pdbx_db_accession Q9X0C0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFD FMERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSG FEEVYLRTYQGKPELLKRDMNTLVEEVKVMLRILKKGMTK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z77 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0C0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 200 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 200 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z77 MSE A 1 ? UNP Q9X0C0 MET 1 'modified residue' 1 1 1 1Z77 MSE A 56 ? UNP Q9X0C0 MET 56 'modified residue' 56 2 1 1Z77 MSE A 71 ? UNP Q9X0C0 MET 71 'modified residue' 71 3 1 1Z77 MSE A 82 ? UNP Q9X0C0 MET 82 'modified residue' 82 4 1 1Z77 MSE A 155 ? UNP Q9X0C0 MET 155 'modified residue' 155 5 1 1Z77 MSE A 180 ? UNP Q9X0C0 MET 180 'modified residue' 180 6 1 1Z77 MSE A 190 ? UNP Q9X0C0 MET 190 'modified residue' 190 7 1 1Z77 MSE A 198 ? UNP Q9X0C0 MET 198 'modified residue' 198 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z77 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.05M Na citrate, 30% w/v PEG 2K MME, 0.1M KSCN, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2005-02-11 ? 2 CCD SBC-3 2005-02-10 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'SI 111 CHANNEL' 'SINGLE WAVELENGTH' x-ray 2 1 M 'SI 111 CHANNEL' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91932 1.0 2 0.97932 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? 0.91932 2 SYNCHROTRON 'APS BEAMLINE 19-BM' APS 19-BM ? 0.97932 # _reflns.entry_id 1Z77 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.00 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 15569 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 24.84 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.539 _reflns_shell.pdbx_Rsym_value 0.471 _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 8.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1531 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Z77 _refine.ls_number_reflns_obs 13472 _refine.ls_number_reflns_all 14438 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.26 _refine.ls_R_factor_obs 0.23129 _refine.ls_R_factor_all 0.23129 _refine.ls_R_factor_R_work 0.22944 _refine.ls_R_factor_R_free 0.26671 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.918 _refine.B_iso_mean 37.765 _refine.aniso_B[1][1] -2.29 _refine.aniso_B[2][2] 1.53 _refine.aniso_B[3][3] 0.75 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD/SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.190 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1596 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1640 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1632 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.667 1.970 ? 2192 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.153 5.000 ? 199 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.921 24.533 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.892 15.000 ? 298 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.246 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 244 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1204 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 786 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 1179 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.162 0.200 ? 65 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.194 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.176 0.200 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 1.454 1.500 ? 1045 'X-RAY DIFFRACTION' ? r_mcangle_it 1.888 2.000 ? 1584 'X-RAY DIFFRACTION' ? r_scbond_it 3.631 3.000 ? 703 'X-RAY DIFFRACTION' ? r_scangle_it 4.916 4.500 ? 608 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 996 _refine_ls_shell.R_factor_R_work 0.23 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1Z77 _struct.title 'Crystal structure of transcriptional regulator protein from Thermotoga maritima.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z77 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;transcriptional regulator, TetR family, structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 20 ? SER A 3 GLY A 20 1 ? 18 HELX_P HELX_P2 2 THR A 25 ? GLY A 34 ? THR A 25 GLY A 34 1 ? 10 HELX_P HELX_P3 3 ALA A 36 ? LYS A 45 ? ALA A 36 LYS A 45 1 ? 10 HELX_P HELX_P4 4 ASN A 46 ? ARG A 74 ? ASN A 46 ARG A 74 1 ? 29 HELX_P HELX_P5 5 ASP A 77 ? HIS A 96 ? ASP A 77 HIS A 96 1 ? 20 HELX_P HELX_P6 6 HIS A 96 ? ILE A 104 ? HIS A 96 ILE A 104 1 ? 9 HELX_P HELX_P7 7 THR A 105 ? VAL A 107 ? THR A 105 VAL A 107 5 ? 3 HELX_P HELX_P8 8 ASP A 110 ? LYS A 137 ? ASP A 110 LYS A 137 1 ? 28 HELX_P HELX_P9 9 THR A 146 ? TYR A 169 ? THR A 146 TYR A 169 1 ? 24 HELX_P HELX_P10 10 LYS A 172 ? THR A 199 ? LYS A 172 THR A 199 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 1 C ? ? ? 1_555 A LEU 2 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A TYR 55 C ? ? ? 1_555 A MSE 56 N ? ? A TYR 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale3 covale both ? A MSE 56 C ? ? ? 1_555 A SER 57 N ? ? A MSE 56 A SER 57 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A LEU 70 C ? ? ? 1_555 A MSE 71 N ? ? A LEU 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? A MSE 71 C ? ? ? 1_555 A LYS 72 N ? ? A MSE 71 A LYS 72 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A PHE 81 C ? ? ? 1_555 A MSE 82 N ? ? A PHE 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A MSE 82 C ? ? ? 1_555 A GLU 83 N ? ? A MSE 82 A GLU 83 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? A LEU 154 C ? ? ? 1_555 A MSE 155 N ? ? A LEU 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale9 covale both ? A MSE 155 C ? ? ? 1_555 A TRP 156 N ? ? A MSE 155 A TRP 156 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? A ASP 179 C ? ? ? 1_555 A MSE 180 N ? ? A ASP 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A MSE 180 C ? ? ? 1_555 A ASN 181 N ? ? A MSE 180 A ASN 181 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? A VAL 189 C ? ? ? 1_555 A MSE 190 N ? ? A VAL 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale13 covale both ? A MSE 190 C ? ? ? 1_555 A LEU 191 N ? ? A MSE 190 A LEU 191 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale14 covale both ? A GLY 197 C ? ? ? 1_555 A MSE 198 N ? ? A GLY 197 A MSE 198 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? A MSE 198 C ? ? ? 1_555 A THR 199 N ? ? A MSE 198 A THR 199 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 2201 ? 5 'BINDING SITE FOR RESIDUE EDO A 2201' AC2 Software A EDO 2202 ? 8 'BINDING SITE FOR RESIDUE EDO A 2202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ALA A 36 ? ALA A 36 . ? 4_556 ? 2 AC1 5 LYS A 37 ? LYS A 37 . ? 4_556 ? 3 AC1 5 ARG A 76 ? ARG A 76 . ? 4_557 ? 4 AC1 5 ASP A 77 ? ASP A 77 . ? 4_557 ? 5 AC1 5 ASP A 80 ? ASP A 80 . ? 4_557 ? 6 AC2 8 SER A 93 ? SER A 93 . ? 4_557 ? 7 AC2 8 PRO A 97 ? PRO A 97 . ? 4_557 ? 8 AC2 8 ALA A 100 ? ALA A 100 . ? 4_557 ? 9 AC2 8 TYR A 169 ? TYR A 169 . ? 4_557 ? 10 AC2 8 GLY A 171 ? GLY A 171 . ? 4_557 ? 11 AC2 8 LYS A 172 ? LYS A 172 . ? 4_557 ? 12 AC2 8 PRO A 173 ? PRO A 173 . ? 4_557 ? 13 AC2 8 HOH D . ? HOH A 2204 . ? 4_557 ? # _database_PDB_matrix.entry_id 1Z77 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z77 _atom_sites.fract_transf_matrix[1][1] 0.017843 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015224 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017955 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 MSE 56 56 56 MSE MSE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 MSE 71 71 71 MSE MSE A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 MSE 82 82 82 MSE MSE A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 GLU 148 148 148 GLU GLU A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 MSE 155 155 155 MSE MSE A . n A 1 156 TRP 156 156 156 TRP TRP A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 MSE 180 180 180 MSE MSE A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 MSE 190 190 190 MSE MSE A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 MSE 198 198 198 MSE MSE A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 LYS 200 200 200 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 2201 2201 EDO EGL A . C 2 EDO 1 2202 2202 EDO EGL A . D 3 HOH 1 2203 1 HOH HOH A . D 3 HOH 2 2204 2 HOH HOH A . D 3 HOH 3 2205 3 HOH HOH A . D 3 HOH 4 2206 4 HOH HOH A . D 3 HOH 5 2207 5 HOH HOH A . D 3 HOH 6 2208 6 HOH HOH A . D 3 HOH 7 2209 7 HOH HOH A . D 3 HOH 8 2210 8 HOH HOH A . D 3 HOH 9 2211 9 HOH HOH A . D 3 HOH 10 2212 10 HOH HOH A . D 3 HOH 11 2213 11 HOH HOH A . D 3 HOH 12 2214 13 HOH HOH A . D 3 HOH 13 2215 14 HOH HOH A . D 3 HOH 14 2216 15 HOH HOH A . D 3 HOH 15 2217 16 HOH HOH A . D 3 HOH 16 2218 17 HOH HOH A . D 3 HOH 17 2219 18 HOH HOH A . D 3 HOH 18 2220 19 HOH HOH A . D 3 HOH 19 2221 20 HOH HOH A . D 3 HOH 20 2222 21 HOH HOH A . D 3 HOH 21 2223 23 HOH HOH A . D 3 HOH 22 2224 24 HOH HOH A . D 3 HOH 23 2225 25 HOH HOH A . D 3 HOH 24 2226 26 HOH HOH A . D 3 HOH 25 2227 27 HOH HOH A . D 3 HOH 26 2228 28 HOH HOH A . D 3 HOH 27 2229 29 HOH HOH A . D 3 HOH 28 2230 30 HOH HOH A . D 3 HOH 29 2231 32 HOH HOH A . D 3 HOH 30 2232 33 HOH HOH A . D 3 HOH 31 2233 34 HOH HOH A . D 3 HOH 32 2234 35 HOH HOH A . D 3 HOH 33 2235 36 HOH HOH A . D 3 HOH 34 2236 37 HOH HOH A . D 3 HOH 35 2237 39 HOH HOH A . D 3 HOH 36 2238 40 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 56 A MSE 56 ? MET SELENOMETHIONINE 3 A MSE 71 A MSE 71 ? MET SELENOMETHIONINE 4 A MSE 82 A MSE 82 ? MET SELENOMETHIONINE 5 A MSE 155 A MSE 155 ? MET SELENOMETHIONINE 6 A MSE 180 A MSE 180 ? MET SELENOMETHIONINE 7 A MSE 190 A MSE 190 ? MET SELENOMETHIONINE 8 A MSE 198 A MSE 198 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3110 ? 1 MORE -5 ? 1 'SSA (A^2)' 20030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 65.6840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-10 2 'Structure model' 1 1 2007-10-09 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2018-11-07 6 'Structure model' 1 5 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly 3 5 'Structure model' pdbx_struct_assembly_gen 4 5 'Structure model' pdbx_struct_assembly_prop 5 5 'Structure model' pdbx_struct_oper_list 6 6 'Structure model' audit_author 7 6 'Structure model' citation_author 8 6 'Structure model' database_2 9 6 'Structure model' struct_conn 10 6 'Structure model' struct_ref_seq_dif 11 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_pdbx_struct_assembly.details' 3 5 'Structure model' '_pdbx_struct_assembly.method_details' 4 5 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 5 5 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 5 'Structure model' '_pdbx_struct_assembly_gen.oper_expression' 7 6 'Structure model' '_audit_author.identifier_ORCID' 8 6 'Structure model' '_citation_author.identifier_ORCID' 9 6 'Structure model' '_database_2.pdbx_DOI' 10 6 'Structure model' '_database_2.pdbx_database_accession' 11 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 6 'Structure model' '_struct_ref_seq_dif.details' 13 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 SHELXD phasing . ? 5 MLPHARE phasing . ? 6 DM phasing . ? 7 SOLVE phasing . ? 8 RESOLVE phasing . ? 9 O 'model building' . ? 10 Coot 'model building' . ? 11 CCP4 phasing . ? 12 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL MOLECULE IS UNKNOWN. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MSE _pdbx_validate_rmsd_angle.auth_seq_id_1 180 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MSE _pdbx_validate_rmsd_angle.auth_seq_id_2 180 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MSE _pdbx_validate_rmsd_angle.auth_seq_id_3 180 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 82.26 _pdbx_validate_rmsd_angle.angle_target_value 98.90 _pdbx_validate_rmsd_angle.angle_deviation -16.64 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 45 ? ? 82.87 -63.86 2 1 SER A 108 ? ? -171.75 -28.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 4 ? CE ? A LYS 4 CE 2 1 Y 1 A LYS 4 ? NZ ? A LYS 4 NZ 3 1 Y 1 A LYS 18 ? CG ? A LYS 18 CG 4 1 Y 1 A LYS 18 ? CD ? A LYS 18 CD 5 1 Y 1 A LYS 18 ? CE ? A LYS 18 CE 6 1 Y 1 A LYS 18 ? NZ ? A LYS 18 NZ 7 1 Y 1 A ARG 23 ? CG ? A ARG 23 CG 8 1 Y 1 A ARG 23 ? CD ? A ARG 23 CD 9 1 Y 1 A ARG 23 ? NE ? A ARG 23 NE 10 1 Y 1 A ARG 23 ? CZ ? A ARG 23 CZ 11 1 Y 1 A ARG 23 ? NH1 ? A ARG 23 NH1 12 1 Y 1 A ARG 23 ? NH2 ? A ARG 23 NH2 13 1 Y 1 A GLU 31 ? CG ? A GLU 31 CG 14 1 Y 1 A GLU 31 ? CD ? A GLU 31 CD 15 1 Y 1 A GLU 31 ? OE1 ? A GLU 31 OE1 16 1 Y 1 A GLU 31 ? OE2 ? A GLU 31 OE2 17 1 Y 1 A LYS 32 ? CE ? A LYS 32 CE 18 1 Y 1 A LYS 32 ? NZ ? A LYS 32 NZ 19 1 Y 1 A LYS 45 ? CE ? A LYS 45 CE 20 1 Y 1 A LYS 45 ? NZ ? A LYS 45 NZ 21 1 Y 1 A GLU 60 ? CG ? A GLU 60 CG 22 1 Y 1 A GLU 60 ? CD ? A GLU 60 CD 23 1 Y 1 A GLU 60 ? OE1 ? A GLU 60 OE1 24 1 Y 1 A GLU 60 ? OE2 ? A GLU 60 OE2 25 1 Y 1 A LYS 61 ? CD ? A LYS 61 CD 26 1 Y 1 A LYS 61 ? CE ? A LYS 61 CE 27 1 Y 1 A LYS 61 ? NZ ? A LYS 61 NZ 28 1 Y 1 A LYS 64 ? CE ? A LYS 64 CE 29 1 Y 1 A LYS 64 ? NZ ? A LYS 64 NZ 30 1 Y 1 A ARG 74 ? NE ? A ARG 74 NE 31 1 Y 1 A ARG 74 ? CZ ? A ARG 74 CZ 32 1 Y 1 A ARG 74 ? NH1 ? A ARG 74 NH1 33 1 Y 1 A ARG 74 ? NH2 ? A ARG 74 NH2 34 1 Y 1 A ARG 84 ? CD ? A ARG 84 CD 35 1 Y 1 A ARG 84 ? NE ? A ARG 84 NE 36 1 Y 1 A ARG 84 ? CZ ? A ARG 84 CZ 37 1 Y 1 A ARG 84 ? NH1 ? A ARG 84 NH1 38 1 Y 1 A ARG 84 ? NH2 ? A ARG 84 NH2 39 1 Y 1 A LYS 89 ? CD ? A LYS 89 CD 40 1 Y 1 A LYS 89 ? CE ? A LYS 89 CE 41 1 Y 1 A LYS 89 ? NZ ? A LYS 89 NZ 42 1 Y 1 A GLU 91 ? CG ? A GLU 91 CG 43 1 Y 1 A GLU 91 ? CD ? A GLU 91 CD 44 1 Y 1 A GLU 91 ? OE1 ? A GLU 91 OE1 45 1 Y 1 A GLU 91 ? OE2 ? A GLU 91 OE2 46 1 Y 1 A ILE 104 ? CD1 ? A ILE 104 CD1 47 1 Y 1 A GLU 111 ? CB ? A GLU 111 CB 48 1 Y 1 A GLU 111 ? CG ? A GLU 111 CG 49 1 Y 1 A GLU 111 ? CD ? A GLU 111 CD 50 1 Y 1 A GLU 111 ? OE1 ? A GLU 111 OE1 51 1 Y 1 A GLU 111 ? OE2 ? A GLU 111 OE2 52 1 Y 1 A LYS 115 ? CE ? A LYS 115 CE 53 1 Y 1 A LYS 115 ? NZ ? A LYS 115 NZ 54 1 Y 1 A LYS 123 ? CG ? A LYS 123 CG 55 1 Y 1 A LYS 123 ? CD ? A LYS 123 CD 56 1 Y 1 A LYS 123 ? CE ? A LYS 123 CE 57 1 Y 1 A LYS 123 ? NZ ? A LYS 123 NZ 58 1 Y 1 A ARG 133 ? NE ? A ARG 133 NE 59 1 Y 1 A ARG 133 ? CZ ? A ARG 133 CZ 60 1 Y 1 A ARG 133 ? NH1 ? A ARG 133 NH1 61 1 Y 1 A ARG 133 ? NH2 ? A ARG 133 NH2 62 1 Y 1 A LYS 137 ? NZ ? A LYS 137 NZ 63 1 Y 1 A GLU 143 ? CB ? A GLU 143 CB 64 1 Y 1 A GLU 143 ? CG ? A GLU 143 CG 65 1 Y 1 A GLU 143 ? CD ? A GLU 143 CD 66 1 Y 1 A GLU 143 ? OE1 ? A GLU 143 OE1 67 1 Y 1 A GLU 143 ? OE2 ? A GLU 143 OE2 68 1 Y 1 A ILE 149 ? CD1 ? A ILE 149 CD1 69 1 Y 1 A LYS 172 ? CD ? A LYS 172 CD 70 1 Y 1 A LYS 172 ? CE ? A LYS 172 CE 71 1 Y 1 A LYS 172 ? NZ ? A LYS 172 NZ 72 1 Y 1 A ARG 178 ? CG ? A ARG 178 CG 73 1 Y 1 A ARG 178 ? CD ? A ARG 178 CD 74 1 Y 1 A ARG 178 ? NE ? A ARG 178 NE 75 1 Y 1 A ARG 178 ? CZ ? A ARG 178 CZ 76 1 Y 1 A ARG 178 ? NH1 ? A ARG 178 NH1 77 1 Y 1 A ARG 178 ? NH2 ? A ARG 178 NH2 78 1 Y 1 A LYS 200 ? CD ? A LYS 200 CD 79 1 Y 1 A LYS 200 ? CE ? A LYS 200 CE 80 1 Y 1 A LYS 200 ? NZ ? A LYS 200 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #