HEADER LIGASE 25-MAR-05 1Z7L TITLE CRYSTAL STRUCTURE OF FRAGMENT OF MOUSE UBIQUITIN-ACTIVATING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-ACTIVATING ENZYME E1 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: SECOND CATALYTIC CYSTEINE HALF-DOMAIN (RESIDUES 626-891); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UBE1X, UBA1, UBE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15MOD; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15-SCCH KEYWDS SCCH, UBIQUITIN-ACTIVATING ENZYME, SECOND CATALYTIC CYSTEINE HALF- KEYWDS 2 DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.H.SZCZEPANOWSKI,R.FILIPEK,M.BOCHTLER REVDAT 4 14-FEB-24 1Z7L 1 REMARK SEQADV REVDAT 3 24-FEB-09 1Z7L 1 VERSN REVDAT 2 13-DEC-05 1Z7L 1 JRNL REVDAT 1 12-APR-05 1Z7L 0 JRNL AUTH R.H.SZCZEPANOWSKI,R.FILIPEK,M.BOCHTLER JRNL TITL CRYSTAL STRUCTURE OF A FRAGMENT OF MOUSE JRNL TITL 2 UBIQUITIN-ACTIVATING ENZYME. JRNL REF J.BIOL.CHEM. V. 280 22006 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15774460 JRNL DOI 10.1074/JBC.M502583200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3580098.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2109 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6679 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 351 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.91000 REMARK 3 B22 (A**2) : -6.91000 REMARK 3 B33 (A**2) : 13.82000 REMARK 3 B12 (A**2) : 2.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.970 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.040 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.740 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 26.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : TBR_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.PARAM REMARK 3 TOPOLOGY FILE 3 : TBR_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATIC REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD COMBINE WITH SIR REMARK 200 SOFTWARE USED: MLPHARE, SHELXD, SIGMAA, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM TCEP, 1.8M AMMONIUM SULFATE, 30% REMARK 280 GLYCEROL, 5MM TRIS, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 108.06150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.38934 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.36400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 108.06150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 62.38934 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.36400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 108.06150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 62.38934 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.36400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 108.06150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 62.38934 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.36400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 108.06150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 62.38934 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.36400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 108.06150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 62.38934 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.36400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 124.77867 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 130.72800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 124.77867 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 130.72800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 124.77867 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 130.72800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 124.77867 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 130.72800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 124.77867 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 130.72800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 124.77867 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 130.72800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 616 REMARK 465 GLY A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 GLU A 624 REMARK 465 PHE A 625 REMARK 465 GLU A 626 REMARK 465 LYS A 627 REMARK 465 SER A 628 REMARK 465 GLN A 815 REMARK 465 SER A 816 REMARK 465 ALA A 817 REMARK 465 ASN A 818 REMARK 465 ALA A 819 REMARK 465 SER A 820 REMARK 465 ILE A 890 REMARK 465 ILE A 891 REMARK 465 MET B 616 REMARK 465 GLY B 617 REMARK 465 HIS B 618 REMARK 465 HIS B 619 REMARK 465 HIS B 620 REMARK 465 HIS B 621 REMARK 465 HIS B 622 REMARK 465 HIS B 623 REMARK 465 GLU B 624 REMARK 465 PHE B 625 REMARK 465 GLU B 626 REMARK 465 LYS B 627 REMARK 465 SER B 628 REMARK 465 GLN B 815 REMARK 465 SER B 816 REMARK 465 ALA B 817 REMARK 465 ASN B 818 REMARK 465 ALA B 819 REMARK 465 SER B 820 REMARK 465 ILE B 890 REMARK 465 ILE B 891 REMARK 465 MET C 616 REMARK 465 GLY C 617 REMARK 465 HIS C 618 REMARK 465 HIS C 619 REMARK 465 HIS C 620 REMARK 465 HIS C 621 REMARK 465 HIS C 622 REMARK 465 HIS C 623 REMARK 465 GLU C 624 REMARK 465 PHE C 625 REMARK 465 GLU C 626 REMARK 465 LYS C 627 REMARK 465 SER C 628 REMARK 465 GLN C 815 REMARK 465 SER C 816 REMARK 465 ALA C 817 REMARK 465 ASN C 818 REMARK 465 ALA C 819 REMARK 465 SER C 820 REMARK 465 ILE C 890 REMARK 465 ILE C 891 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 814 CG CD1 CD2 REMARK 470 LYS A 889 CG CD CE NZ REMARK 470 LEU B 814 CG CD1 CD2 REMARK 470 LYS B 889 CG CD CE NZ REMARK 470 LEU C 814 CG CD1 CD2 REMARK 470 LYS C 889 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 639 -3.30 -142.41 REMARK 500 LYS A 657 -61.40 -125.30 REMARK 500 ALA A 680 108.25 -32.60 REMARK 500 VAL A 696 -71.85 -124.44 REMARK 500 CYS A 719 -73.33 -134.60 REMARK 500 PRO A 745 5.30 -67.75 REMARK 500 PRO A 834 152.92 -49.98 REMARK 500 ALA A 887 41.82 -89.55 REMARK 500 ASN B 639 -2.16 -142.98 REMARK 500 LYS B 657 -62.18 -124.09 REMARK 500 ALA B 680 107.79 -32.24 REMARK 500 VAL B 696 -71.87 -126.05 REMARK 500 CYS B 719 -73.05 -133.80 REMARK 500 PRO B 745 3.55 -68.30 REMARK 500 PRO B 834 153.51 -49.70 REMARK 500 ALA B 887 42.37 -91.21 REMARK 500 PHE C 637 65.86 -119.93 REMARK 500 ASN C 639 -3.10 -140.99 REMARK 500 LYS C 657 -61.73 -124.91 REMARK 500 THR C 668 -60.45 -103.41 REMARK 500 ALA C 680 107.93 -29.17 REMARK 500 VAL C 696 -71.61 -126.43 REMARK 500 CYS C 719 -72.77 -131.72 REMARK 500 PRO C 745 5.58 -68.75 REMARK 500 PRO C 834 153.23 -49.55 REMARK 500 ALA C 887 39.88 -89.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBR A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBR B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBR C 1001 DBREF 1Z7L A 626 891 UNP Q02053 UBE1_MOUSE 626 891 DBREF 1Z7L B 626 891 UNP Q02053 UBE1_MOUSE 626 891 DBREF 1Z7L C 626 891 UNP Q02053 UBE1_MOUSE 626 891 SEQADV 1Z7L MET A 616 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLY A 617 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 618 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 619 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 620 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 621 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 622 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS A 623 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLU A 624 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L PHE A 625 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L MET B 616 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLY B 617 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 618 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 619 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 620 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 621 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 622 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS B 623 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLU B 624 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L PHE B 625 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L MET C 616 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLY C 617 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 618 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 619 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 620 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 621 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 622 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L HIS C 623 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L GLU C 624 UNP Q02053 EXPRESSION TAG SEQADV 1Z7L PHE C 625 UNP Q02053 EXPRESSION TAG SEQRES 1 A 276 MET GLY HIS HIS HIS HIS HIS HIS GLU PHE GLU LYS SER SEQRES 2 A 276 ILE PRO ILE CYS THR LEU LYS ASN PHE PRO ASN ALA ILE SEQRES 3 A 276 GLU HIS THR LEU GLN TRP ALA ARG ASP GLU PHE GLU GLY SEQRES 4 A 276 LEU PHE LYS GLN PRO ALA GLU ASN VAL ASN GLN TYR LEU SEQRES 5 A 276 THR ASP SER LYS PHE VAL GLU ARG THR LEU ARG LEU ALA SEQRES 6 A 276 GLY THR GLN PRO LEU GLU VAL LEU GLU ALA VAL GLN ARG SEQRES 7 A 276 SER LEU VAL LEU GLN ARG PRO GLN THR TRP GLY ASP CYS SEQRES 8 A 276 VAL THR TRP ALA CYS HIS HIS TRP HIS THR GLN TYR CYS SEQRES 9 A 276 ASN ASN ILE ARG GLN LEU LEU HIS ASN PHE PRO PRO ASP SEQRES 10 A 276 GLN LEU THR SER SER GLY ALA PRO PHE TRP SER GLY PRO SEQRES 11 A 276 LYS ARG CYS PRO HIS PRO LEU THR PHE ASP VAL ASN ASN SEQRES 12 A 276 THR LEU HIS LEU ASP TYR VAL MET ALA ALA ALA ASN LEU SEQRES 13 A 276 PHE ALA GLN THR TYR GLY LEU THR GLY SER GLN ASP ARG SEQRES 14 A 276 ALA ALA VAL ALA SER LEU LEU GLN SER VAL GLN VAL PRO SEQRES 15 A 276 GLU PHE THR PRO LYS SER GLY VAL LYS ILE HIS VAL SER SEQRES 16 A 276 ASP GLN GLU LEU GLN SER ALA ASN ALA SER VAL ASP ASP SEQRES 17 A 276 SER ARG LEU GLU GLU LEU LYS ALA THR LEU PRO SER PRO SEQRES 18 A 276 ASP LYS LEU PRO GLY PHE LYS MET TYR PRO ILE ASP PHE SEQRES 19 A 276 GLU LYS ASP ASP ASP SER ASN PHE HIS MET ASP PHE ILE SEQRES 20 A 276 VAL ALA ALA SER ASN LEU ARG ALA GLU ASN TYR ASP ILE SEQRES 21 A 276 SER PRO ALA ASP ARG HIS LYS SER LYS LEU ILE ALA GLY SEQRES 22 A 276 LYS ILE ILE SEQRES 1 B 276 MET GLY HIS HIS HIS HIS HIS HIS GLU PHE GLU LYS SER SEQRES 2 B 276 ILE PRO ILE CYS THR LEU LYS ASN PHE PRO ASN ALA ILE SEQRES 3 B 276 GLU HIS THR LEU GLN TRP ALA ARG ASP GLU PHE GLU GLY SEQRES 4 B 276 LEU PHE LYS GLN PRO ALA GLU ASN VAL ASN GLN TYR LEU SEQRES 5 B 276 THR ASP SER LYS PHE VAL GLU ARG THR LEU ARG LEU ALA SEQRES 6 B 276 GLY THR GLN PRO LEU GLU VAL LEU GLU ALA VAL GLN ARG SEQRES 7 B 276 SER LEU VAL LEU GLN ARG PRO GLN THR TRP GLY ASP CYS SEQRES 8 B 276 VAL THR TRP ALA CYS HIS HIS TRP HIS THR GLN TYR CYS SEQRES 9 B 276 ASN ASN ILE ARG GLN LEU LEU HIS ASN PHE PRO PRO ASP SEQRES 10 B 276 GLN LEU THR SER SER GLY ALA PRO PHE TRP SER GLY PRO SEQRES 11 B 276 LYS ARG CYS PRO HIS PRO LEU THR PHE ASP VAL ASN ASN SEQRES 12 B 276 THR LEU HIS LEU ASP TYR VAL MET ALA ALA ALA ASN LEU SEQRES 13 B 276 PHE ALA GLN THR TYR GLY LEU THR GLY SER GLN ASP ARG SEQRES 14 B 276 ALA ALA VAL ALA SER LEU LEU GLN SER VAL GLN VAL PRO SEQRES 15 B 276 GLU PHE THR PRO LYS SER GLY VAL LYS ILE HIS VAL SER SEQRES 16 B 276 ASP GLN GLU LEU GLN SER ALA ASN ALA SER VAL ASP ASP SEQRES 17 B 276 SER ARG LEU GLU GLU LEU LYS ALA THR LEU PRO SER PRO SEQRES 18 B 276 ASP LYS LEU PRO GLY PHE LYS MET TYR PRO ILE ASP PHE SEQRES 19 B 276 GLU LYS ASP ASP ASP SER ASN PHE HIS MET ASP PHE ILE SEQRES 20 B 276 VAL ALA ALA SER ASN LEU ARG ALA GLU ASN TYR ASP ILE SEQRES 21 B 276 SER PRO ALA ASP ARG HIS LYS SER LYS LEU ILE ALA GLY SEQRES 22 B 276 LYS ILE ILE SEQRES 1 C 276 MET GLY HIS HIS HIS HIS HIS HIS GLU PHE GLU LYS SER SEQRES 2 C 276 ILE PRO ILE CYS THR LEU LYS ASN PHE PRO ASN ALA ILE SEQRES 3 C 276 GLU HIS THR LEU GLN TRP ALA ARG ASP GLU PHE GLU GLY SEQRES 4 C 276 LEU PHE LYS GLN PRO ALA GLU ASN VAL ASN GLN TYR LEU SEQRES 5 C 276 THR ASP SER LYS PHE VAL GLU ARG THR LEU ARG LEU ALA SEQRES 6 C 276 GLY THR GLN PRO LEU GLU VAL LEU GLU ALA VAL GLN ARG SEQRES 7 C 276 SER LEU VAL LEU GLN ARG PRO GLN THR TRP GLY ASP CYS SEQRES 8 C 276 VAL THR TRP ALA CYS HIS HIS TRP HIS THR GLN TYR CYS SEQRES 9 C 276 ASN ASN ILE ARG GLN LEU LEU HIS ASN PHE PRO PRO ASP SEQRES 10 C 276 GLN LEU THR SER SER GLY ALA PRO PHE TRP SER GLY PRO SEQRES 11 C 276 LYS ARG CYS PRO HIS PRO LEU THR PHE ASP VAL ASN ASN SEQRES 12 C 276 THR LEU HIS LEU ASP TYR VAL MET ALA ALA ALA ASN LEU SEQRES 13 C 276 PHE ALA GLN THR TYR GLY LEU THR GLY SER GLN ASP ARG SEQRES 14 C 276 ALA ALA VAL ALA SER LEU LEU GLN SER VAL GLN VAL PRO SEQRES 15 C 276 GLU PHE THR PRO LYS SER GLY VAL LYS ILE HIS VAL SER SEQRES 16 C 276 ASP GLN GLU LEU GLN SER ALA ASN ALA SER VAL ASP ASP SEQRES 17 C 276 SER ARG LEU GLU GLU LEU LYS ALA THR LEU PRO SER PRO SEQRES 18 C 276 ASP LYS LEU PRO GLY PHE LYS MET TYR PRO ILE ASP PHE SEQRES 19 C 276 GLU LYS ASP ASP ASP SER ASN PHE HIS MET ASP PHE ILE SEQRES 20 C 276 VAL ALA ALA SER ASN LEU ARG ALA GLU ASN TYR ASP ILE SEQRES 21 C 276 SER PRO ALA ASP ARG HIS LYS SER LYS LEU ILE ALA GLY SEQRES 22 C 276 LYS ILE ILE HET TBR A 999 18 HET TBR B1000 18 HET TBR C1001 18 HETNAM TBR HEXATANTALUM DODECABROMIDE HETSYN TBR DODECABROMOHEXATANTALUM FORMUL 4 TBR 3(BR12 TA6) HELIX 1 1 PRO A 630 ASN A 636 1 7 HELIX 2 2 ALA A 640 LYS A 657 1 18 HELIX 3 3 LYS A 657 LEU A 667 1 11 HELIX 4 4 SER A 670 ARG A 678 1 9 HELIX 5 5 THR A 682 VAL A 696 1 15 HELIX 6 6 THR A 702 CYS A 719 1 18 HELIX 7 7 CYS A 719 PHE A 729 1 11 HELIX 8 8 ASN A 758 TYR A 776 1 19 HELIX 9 9 ASP A 783 SER A 793 1 11 HELIX 10 10 ASP A 823 LEU A 833 1 11 HELIX 11 11 SER A 835 LEU A 839 5 5 HELIX 12 12 PHE A 857 TYR A 873 1 17 HELIX 13 13 ASP A 879 ALA A 887 1 9 HELIX 14 14 PRO B 630 ASN B 636 1 7 HELIX 15 15 ALA B 640 LYS B 657 1 18 HELIX 16 16 LYS B 657 LEU B 667 1 11 HELIX 17 17 SER B 670 ARG B 678 1 9 HELIX 18 18 THR B 682 VAL B 696 1 15 HELIX 19 19 THR B 702 CYS B 719 1 18 HELIX 20 20 CYS B 719 PHE B 729 1 11 HELIX 21 21 ASN B 758 TYR B 776 1 19 HELIX 22 22 ASP B 783 SER B 793 1 11 HELIX 23 23 ASP B 823 LEU B 833 1 11 HELIX 24 24 SER B 835 LEU B 839 5 5 HELIX 25 25 PHE B 857 TYR B 873 1 17 HELIX 26 26 ASP B 879 ALA B 887 1 9 HELIX 27 27 PRO C 630 ASN C 636 1 7 HELIX 28 28 ALA C 640 LYS C 657 1 18 HELIX 29 29 LYS C 657 LEU C 667 1 11 HELIX 30 30 SER C 670 ARG C 678 1 9 HELIX 31 31 THR C 682 VAL C 696 1 15 HELIX 32 32 THR C 702 CYS C 719 1 18 HELIX 33 33 CYS C 719 PHE C 729 1 11 HELIX 34 34 ASN C 758 TYR C 776 1 19 HELIX 35 35 ASP C 783 SER C 793 1 11 HELIX 36 36 ASP C 823 LEU C 833 1 11 HELIX 37 37 SER C 835 LEU C 839 5 5 HELIX 38 38 PHE C 857 TYR C 873 1 17 HELIX 39 39 ASP C 879 ALA C 887 1 9 SITE 1 AC1 3 GLN A 646 ARG A 649 ASP A 650 SITE 1 AC2 3 GLN B 646 ARG B 649 ASP B 650 SITE 1 AC3 4 GLN C 646 ARG C 649 ASP C 650 GLU C 653 CRYST1 216.123 216.123 196.092 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004627 0.002671 0.000000 0.00000 SCALE2 0.000000 0.005343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005100 0.00000