data_1Z7Y # _entry.id 1Z7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z7Y pdb_00001z7y 10.2210/pdb1z7y/pdb RCSB RCSB032411 ? ? WWPDB D_1000032411 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1Z7W _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z7Y _pdbx_database_status.recvd_initial_deposition_date 2005-03-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bonner, E.R.' 1 'Cahoon, R.E.' 2 'Knapke, S.M.' 3 'Jez, J.M.' 4 # _citation.id primary _citation.title ;Molecular Basis of Cysteine Biosynthesis in Plants: STRUCTURAL AND FUNCTIONAL ANALYSIS OF O-ACETYLSERINE SULFHYDRYLASE FROM ARABIDOPSIS THALIANA. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 38803 _citation.page_last 38813 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16166087 _citation.pdbx_database_id_DOI 10.1074/jbc.M505313200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonner, E.R.' 1 ? primary 'Cahoon, R.E.' 2 ? primary 'Knapke, S.M.' 3 ? primary 'Jez, J.M.' 4 ? # _cell.entry_id 1Z7Y _cell.length_a 105.856 _cell.length_b 105.856 _cell.length_c 100.159 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Z7Y _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cysteine synthase' 33781.926 1 2.5.1.47 K46A ? ? 2 non-polymer syn 'N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE' 378.338 1 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O-acetylserine sulfhydrylase, O-acetylserine (Thiol)-lyase, CSase A, CS-A, OAS-TL A, Cys-3A, At.OAS.5-8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGV GLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYET TGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLI DEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF EA ; _entity_poly.pdbx_seq_one_letter_code_can ;MASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGV GLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYET TGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLI DEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF EA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 ARG n 1 5 ILE n 1 6 ALA n 1 7 LYS n 1 8 ASP n 1 9 VAL n 1 10 THR n 1 11 GLU n 1 12 LEU n 1 13 ILE n 1 14 GLY n 1 15 ASN n 1 16 THR n 1 17 PRO n 1 18 LEU n 1 19 VAL n 1 20 TYR n 1 21 LEU n 1 22 ASN n 1 23 ASN n 1 24 VAL n 1 25 ALA n 1 26 GLU n 1 27 GLY n 1 28 CYS n 1 29 VAL n 1 30 GLY n 1 31 ARG n 1 32 VAL n 1 33 ALA n 1 34 ALA n 1 35 LYS n 1 36 LEU n 1 37 GLU n 1 38 MET n 1 39 MET n 1 40 GLU n 1 41 PRO n 1 42 CYS n 1 43 SER n 1 44 SER n 1 45 VAL n 1 46 ALA n 1 47 ASP n 1 48 ARG n 1 49 ILE n 1 50 GLY n 1 51 PHE n 1 52 SER n 1 53 MET n 1 54 ILE n 1 55 SER n 1 56 ASP n 1 57 ALA n 1 58 GLU n 1 59 LYS n 1 60 LYS n 1 61 GLY n 1 62 LEU n 1 63 ILE n 1 64 LYS n 1 65 PRO n 1 66 GLY n 1 67 GLU n 1 68 SER n 1 69 VAL n 1 70 LEU n 1 71 ILE n 1 72 GLU n 1 73 PRO n 1 74 THR n 1 75 SER n 1 76 GLY n 1 77 ASN n 1 78 THR n 1 79 GLY n 1 80 VAL n 1 81 GLY n 1 82 LEU n 1 83 ALA n 1 84 PHE n 1 85 THR n 1 86 ALA n 1 87 ALA n 1 88 ALA n 1 89 LYS n 1 90 GLY n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 ILE n 1 95 ILE n 1 96 THR n 1 97 MET n 1 98 PRO n 1 99 ALA n 1 100 SER n 1 101 MET n 1 102 SER n 1 103 THR n 1 104 GLU n 1 105 ARG n 1 106 ARG n 1 107 ILE n 1 108 ILE n 1 109 LEU n 1 110 LEU n 1 111 ALA n 1 112 PHE n 1 113 GLY n 1 114 VAL n 1 115 GLU n 1 116 LEU n 1 117 VAL n 1 118 LEU n 1 119 THR n 1 120 ASP n 1 121 PRO n 1 122 ALA n 1 123 LYS n 1 124 GLY n 1 125 MET n 1 126 LYS n 1 127 GLY n 1 128 ALA n 1 129 ILE n 1 130 ALA n 1 131 LYS n 1 132 ALA n 1 133 GLU n 1 134 GLU n 1 135 ILE n 1 136 LEU n 1 137 ALA n 1 138 LYS n 1 139 THR n 1 140 PRO n 1 141 ASN n 1 142 GLY n 1 143 TYR n 1 144 MET n 1 145 LEU n 1 146 GLN n 1 147 GLN n 1 148 PHE n 1 149 GLU n 1 150 ASN n 1 151 PRO n 1 152 ALA n 1 153 ASN n 1 154 PRO n 1 155 LYS n 1 156 ILE n 1 157 HIS n 1 158 TYR n 1 159 GLU n 1 160 THR n 1 161 THR n 1 162 GLY n 1 163 PRO n 1 164 GLU n 1 165 ILE n 1 166 TRP n 1 167 LYS n 1 168 GLY n 1 169 THR n 1 170 GLY n 1 171 GLY n 1 172 LYS n 1 173 ILE n 1 174 ASP n 1 175 GLY n 1 176 PHE n 1 177 VAL n 1 178 SER n 1 179 GLY n 1 180 ILE n 1 181 GLY n 1 182 THR n 1 183 GLY n 1 184 GLY n 1 185 THR n 1 186 ILE n 1 187 THR n 1 188 GLY n 1 189 ALA n 1 190 GLY n 1 191 LYS n 1 192 TYR n 1 193 LEU n 1 194 LYS n 1 195 GLU n 1 196 GLN n 1 197 ASN n 1 198 ALA n 1 199 ASN n 1 200 VAL n 1 201 LYS n 1 202 LEU n 1 203 TYR n 1 204 GLY n 1 205 VAL n 1 206 GLU n 1 207 PRO n 1 208 VAL n 1 209 GLU n 1 210 SER n 1 211 ALA n 1 212 ILE n 1 213 LEU n 1 214 SER n 1 215 GLY n 1 216 GLY n 1 217 LYS n 1 218 PRO n 1 219 GLY n 1 220 PRO n 1 221 HIS n 1 222 LYS n 1 223 ILE n 1 224 GLN n 1 225 GLY n 1 226 ILE n 1 227 GLY n 1 228 ALA n 1 229 GLY n 1 230 PHE n 1 231 ILE n 1 232 PRO n 1 233 SER n 1 234 VAL n 1 235 LEU n 1 236 ASN n 1 237 VAL n 1 238 ASP n 1 239 LEU n 1 240 ILE n 1 241 ASP n 1 242 GLU n 1 243 VAL n 1 244 VAL n 1 245 GLN n 1 246 VAL n 1 247 SER n 1 248 SER n 1 249 ASP n 1 250 GLU n 1 251 SER n 1 252 ILE n 1 253 ASP n 1 254 MET n 1 255 ALA n 1 256 ARG n 1 257 GLN n 1 258 LEU n 1 259 ALA n 1 260 LEU n 1 261 LYS n 1 262 GLU n 1 263 GLY n 1 264 LEU n 1 265 LEU n 1 266 VAL n 1 267 GLY n 1 268 ILE n 1 269 SER n 1 270 SER n 1 271 GLY n 1 272 ALA n 1 273 ALA n 1 274 ALA n 1 275 ALA n 1 276 ALA n 1 277 ALA n 1 278 ILE n 1 279 LYS n 1 280 LEU n 1 281 ALA n 1 282 GLN n 1 283 ARG n 1 284 PRO n 1 285 GLU n 1 286 ASN n 1 287 ALA n 1 288 GLY n 1 289 LYS n 1 290 LEU n 1 291 PHE n 1 292 VAL n 1 293 ALA n 1 294 ILE n 1 295 PHE n 1 296 PRO n 1 297 SER n 1 298 PHE n 1 299 GLY n 1 300 GLU n 1 301 ARG n 1 302 TYR n 1 303 LEU n 1 304 SER n 1 305 THR n 1 306 VAL n 1 307 LEU n 1 308 PHE n 1 309 ASP n 1 310 ALA n 1 311 THR n 1 312 ARG n 1 313 LYS n 1 314 GLU n 1 315 ALA n 1 316 GLU n 1 317 ALA n 1 318 MET n 1 319 THR n 1 320 PHE n 1 321 GLU n 1 322 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus Arabidopsis _entity_src_gen.pdbx_gene_src_gene 'OASA1, OAS1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a-AtOASSA-K46A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYSK1_ARATH _struct_ref.pdbx_db_accession P47998 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGV GLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYET TGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLI DEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF EA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z7Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 322 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47998 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 322 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 322 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1Z7Y _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 46 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P47998 _struct_ref_seq_dif.db_mon_id LYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 46 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 46 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AA5 non-polymer . 'N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE' ? 'C13 H19 N2 O7 P S' 378.338 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z7Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details 'sodium formate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2005-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1Z7Y _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 60 _reflns.number_all 15955 _reflns.number_obs 15955 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Z7Y _refine.ls_d_res_high 2.7 _refine.ls_d_res_low 15 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16181 _refine.ls_number_reflns_obs 15955 _refine.ls_number_reflns_R_free 795 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.251 _refine.ls_R_factor_R_free 0.277 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB Entry 1OAS' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2354 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 2450 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1Z7Y _struct.title 'Crystal Structure of the Arabidopsis thaliana O-Acetylserine Sulfhydrylase K46A mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z7Y _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? ILE A 13 ? ASP A 8 ILE A 13 5 ? 6 HELX_P HELX_P2 2 MET A 38 ? GLU A 40 ? MET A 38 GLU A 40 5 ? 3 HELX_P HELX_P3 3 ALA A 46 ? LYS A 60 ? ALA A 46 LYS A 60 1 ? 15 HELX_P HELX_P4 4 ASN A 77 ? LYS A 89 ? ASN A 77 LYS A 89 1 ? 13 HELX_P HELX_P5 5 THR A 103 ? ALA A 111 ? THR A 103 ALA A 111 1 ? 9 HELX_P HELX_P6 6 LYS A 123 ? THR A 139 ? LYS A 123 THR A 139 1 ? 17 HELX_P HELX_P7 7 PRO A 151 ? THR A 160 ? PRO A 151 THR A 160 1 ? 10 HELX_P HELX_P8 8 THR A 160 ? GLY A 170 ? THR A 160 GLY A 170 1 ? 11 HELX_P HELX_P9 9 GLY A 183 ? GLU A 195 ? GLY A 183 GLU A 195 1 ? 13 HELX_P HELX_P10 10 GLU A 209 ? GLY A 215 ? GLU A 209 GLY A 215 5 ? 7 HELX_P HELX_P11 11 ASN A 236 ? ILE A 240 ? ASN A 236 ILE A 240 5 ? 5 HELX_P HELX_P12 12 SER A 247 ? GLY A 263 ? SER A 247 GLY A 263 1 ? 17 HELX_P HELX_P13 13 GLY A 267 ? GLN A 282 ? GLY A 267 GLN A 282 1 ? 16 HELX_P HELX_P14 14 ARG A 283 ? ALA A 287 ? ARG A 283 ALA A 287 5 ? 5 HELX_P HELX_P15 15 PHE A 298 ? LEU A 303 ? PHE A 298 LEU A 303 5 ? 6 HELX_P HELX_P16 16 THR A 305 ? MET A 318 ? THR A 305 MET A 318 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 18 ? TYR A 20 ? LEU A 18 TYR A 20 A 2 ARG A 31 ? LEU A 36 ? ARG A 31 LEU A 36 A 3 LEU A 290 ? PHE A 295 ? LEU A 290 PHE A 295 A 4 GLY A 175 ? GLY A 179 ? GLY A 175 GLY A 179 A 5 LYS A 201 ? PRO A 207 ? LYS A 201 PRO A 207 A 6 GLU A 242 ? VAL A 246 ? GLU A 242 VAL A 246 B 1 VAL A 117 ? THR A 119 ? VAL A 117 THR A 119 B 2 LYS A 92 ? PRO A 98 ? LYS A 92 PRO A 98 B 3 VAL A 69 ? PRO A 73 ? VAL A 69 PRO A 73 B 4 GLY A 142 ? MET A 144 ? GLY A 142 MET A 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 19 ? N VAL A 19 O ALA A 34 ? O ALA A 34 A 2 3 N ALA A 33 ? N ALA A 33 O PHE A 291 ? O PHE A 291 A 3 4 O VAL A 292 ? O VAL A 292 N GLY A 175 ? N GLY A 175 A 4 5 N PHE A 176 ? N PHE A 176 O LYS A 201 ? O LYS A 201 A 5 6 N GLY A 204 ? N GLY A 204 O GLU A 242 ? O GLU A 242 B 1 2 O VAL A 117 ? O VAL A 117 N MET A 97 ? N MET A 97 B 2 3 O THR A 96 ? O THR A 96 N GLU A 72 ? N GLU A 72 B 3 4 N ILE A 71 ? N ILE A 71 O TYR A 143 ? O TYR A 143 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id AA5 _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 19 _struct_site.details 'BINDING SITE FOR RESIDUE AA5 A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 THR A 74 ? THR A 74 . ? 1_555 ? 2 AC1 19 GLY A 76 ? GLY A 76 . ? 1_555 ? 3 AC1 19 ASN A 77 ? ASN A 77 . ? 1_555 ? 4 AC1 19 THR A 78 ? THR A 78 . ? 1_555 ? 5 AC1 19 GLN A 147 ? GLN A 147 . ? 1_555 ? 6 AC1 19 GLY A 179 ? GLY A 179 . ? 1_555 ? 7 AC1 19 ILE A 180 ? ILE A 180 . ? 1_555 ? 8 AC1 19 GLY A 181 ? GLY A 181 . ? 1_555 ? 9 AC1 19 THR A 182 ? THR A 182 . ? 1_555 ? 10 AC1 19 GLY A 183 ? GLY A 183 . ? 1_555 ? 11 AC1 19 GLY A 184 ? GLY A 184 . ? 1_555 ? 12 AC1 19 THR A 185 ? THR A 185 . ? 1_555 ? 13 AC1 19 GLY A 225 ? GLY A 225 . ? 1_555 ? 14 AC1 19 ILE A 226 ? ILE A 226 . ? 1_555 ? 15 AC1 19 SER A 269 ? SER A 269 . ? 1_555 ? 16 AC1 19 PRO A 296 ? PRO A 296 . ? 1_555 ? 17 AC1 19 SER A 297 ? SER A 297 . ? 1_555 ? 18 AC1 19 TYR A 302 ? TYR A 302 . ? 1_555 ? 19 AC1 19 HOH C . ? HOH A 508 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z7Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z7Y _atom_sites.fract_transf_matrix[1][1] 0.009447 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009447 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009984 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 MET 101 101 101 MET MET A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 HIS 157 157 157 HIS HIS A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 TRP 166 166 166 TRP TRP A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 TYR 203 203 203 TYR TYR A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 PRO 218 218 218 PRO PRO A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 PRO 220 220 220 PRO PRO A . n A 1 221 HIS 221 221 221 HIS HIS A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 ILE 231 231 231 ILE ILE A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 SER 233 233 233 SER SER A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 ASN 236 236 236 ASN ASN A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 ILE 240 240 240 ILE ILE A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 GLN 245 245 245 GLN GLN A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 SER 248 248 248 SER SER A . n A 1 249 ASP 249 249 249 ASP ASP A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 MET 254 254 254 MET MET A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 GLN 257 257 257 GLN GLN A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 LYS 261 261 261 LYS LYS A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 VAL 266 266 266 VAL VAL A . n A 1 267 GLY 267 267 267 GLY GLY A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 ALA 274 274 274 ALA ALA A . n A 1 275 ALA 275 275 275 ALA ALA A . n A 1 276 ALA 276 276 276 ALA ALA A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 LYS 279 279 279 LYS LYS A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 GLN 282 282 282 GLN GLN A . n A 1 283 ARG 283 283 283 ARG ARG A . n A 1 284 PRO 284 284 284 PRO PRO A . n A 1 285 GLU 285 285 285 GLU GLU A . n A 1 286 ASN 286 286 286 ASN ASN A . n A 1 287 ALA 287 287 287 ALA ALA A . n A 1 288 GLY 288 288 288 GLY GLY A . n A 1 289 LYS 289 289 289 LYS LYS A . n A 1 290 LEU 290 290 290 LEU LEU A . n A 1 291 PHE 291 291 291 PHE PHE A . n A 1 292 VAL 292 292 292 VAL VAL A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 ILE 294 294 294 ILE ILE A . n A 1 295 PHE 295 295 295 PHE PHE A . n A 1 296 PRO 296 296 296 PRO PRO A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 PHE 298 298 298 PHE PHE A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 GLU 300 300 300 GLU GLU A . n A 1 301 ARG 301 301 301 ARG ARG A . n A 1 302 TYR 302 302 302 TYR TYR A . n A 1 303 LEU 303 303 303 LEU LEU A . n A 1 304 SER 304 304 304 SER SER A . n A 1 305 THR 305 305 305 THR THR A . n A 1 306 VAL 306 306 306 VAL VAL A . n A 1 307 LEU 307 307 307 LEU LEU A . n A 1 308 PHE 308 308 308 PHE PHE A . n A 1 309 ASP 309 309 309 ASP ASP A . n A 1 310 ALA 310 310 310 ALA ALA A . n A 1 311 THR 311 311 311 THR THR A . n A 1 312 ARG 312 312 312 ARG ARG A . n A 1 313 LYS 313 313 313 LYS LYS A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 ALA 315 315 315 ALA ALA A . n A 1 316 GLU 316 316 316 GLU GLU A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 MET 318 318 318 MET MET A . n A 1 319 THR 319 319 319 THR THR A . n A 1 320 PHE 320 320 320 PHE PHE A . n A 1 321 GLU 321 321 321 GLU GLU A . n A 1 322 ALA 322 322 322 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AA5 1 501 501 AA5 AAA A . C 3 HOH 1 502 1 HOH WAT A . C 3 HOH 2 503 2 HOH WAT A . C 3 HOH 3 504 3 HOH WAT A . C 3 HOH 4 505 4 HOH WAT A . C 3 HOH 5 506 5 HOH WAT A . C 3 HOH 6 507 6 HOH WAT A . C 3 HOH 7 508 7 HOH WAT A . C 3 HOH 8 509 8 HOH WAT A . C 3 HOH 9 510 9 HOH WAT A . C 3 HOH 10 511 10 HOH WAT A . C 3 HOH 11 512 11 HOH WAT A . C 3 HOH 12 513 12 HOH WAT A . C 3 HOH 13 514 13 HOH WAT A . C 3 HOH 14 515 14 HOH WAT A . C 3 HOH 15 516 15 HOH WAT A . C 3 HOH 16 517 16 HOH WAT A . C 3 HOH 17 518 17 HOH WAT A . C 3 HOH 18 519 18 HOH WAT A . C 3 HOH 19 520 19 HOH WAT A . C 3 HOH 20 521 20 HOH WAT A . C 3 HOH 21 522 21 HOH WAT A . C 3 HOH 22 523 22 HOH WAT A . C 3 HOH 23 524 23 HOH WAT A . C 3 HOH 24 525 24 HOH WAT A . C 3 HOH 25 526 25 HOH WAT A . C 3 HOH 26 527 26 HOH WAT A . C 3 HOH 27 528 27 HOH WAT A . C 3 HOH 28 529 28 HOH WAT A . C 3 HOH 29 530 29 HOH WAT A . C 3 HOH 30 531 30 HOH WAT A . C 3 HOH 31 532 31 HOH WAT A . C 3 HOH 32 533 32 HOH WAT A . C 3 HOH 33 534 33 HOH WAT A . C 3 HOH 34 535 34 HOH WAT A . C 3 HOH 35 536 35 HOH WAT A . C 3 HOH 36 537 36 HOH WAT A . C 3 HOH 37 538 37 HOH WAT A . C 3 HOH 38 539 38 HOH WAT A . C 3 HOH 39 540 39 HOH WAT A . C 3 HOH 40 541 40 HOH WAT A . C 3 HOH 41 542 41 HOH WAT A . C 3 HOH 42 543 42 HOH WAT A . C 3 HOH 43 544 43 HOH WAT A . C 3 HOH 44 545 44 HOH WAT A . C 3 HOH 45 546 45 HOH WAT A . C 3 HOH 46 547 46 HOH WAT A . C 3 HOH 47 548 47 HOH WAT A . C 3 HOH 48 549 48 HOH WAT A . C 3 HOH 49 550 49 HOH WAT A . C 3 HOH 50 551 50 HOH WAT A . C 3 HOH 51 552 51 HOH WAT A . C 3 HOH 52 553 52 HOH WAT A . C 3 HOH 53 554 53 HOH WAT A . C 3 HOH 54 555 54 HOH WAT A . C 3 HOH 55 556 55 HOH WAT A . C 3 HOH 56 557 56 HOH WAT A . C 3 HOH 57 558 57 HOH WAT A . C 3 HOH 58 559 58 HOH WAT A . C 3 HOH 59 560 59 HOH WAT A . C 3 HOH 60 561 60 HOH WAT A . C 3 HOH 61 562 61 HOH WAT A . C 3 HOH 62 563 62 HOH WAT A . C 3 HOH 63 564 63 HOH WAT A . C 3 HOH 64 565 64 HOH WAT A . C 3 HOH 65 566 65 HOH WAT A . C 3 HOH 66 567 66 HOH WAT A . C 3 HOH 67 568 67 HOH WAT A . C 3 HOH 68 569 68 HOH WAT A . C 3 HOH 69 570 69 HOH WAT A . C 3 HOH 70 571 70 HOH WAT A . C 3 HOH 71 572 71 HOH WAT A . C 3 HOH 72 573 72 HOH WAT A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 7200 ? 2 MORE -58 ? 2 'SSA (A^2)' 22730 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 105.8560000000 -1.0000000000 0.0000000000 0.0000000000 105.8560000000 0.0000000000 0.0000000000 -1.0000000000 -50.0795000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-20 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' . ? 1 'PROTEUM PLUS' 'data reduction' . ? 2 CNS refinement . ? 3 'PROTEUM PLUS' 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 22 ? ? -98.48 -81.61 2 1 PRO A 65 ? ? -29.73 125.47 3 1 GLU A 72 ? ? -179.02 129.57 4 1 THR A 74 ? ? 179.33 150.80 5 1 ALA A 99 ? ? -66.96 0.55 6 1 SER A 102 ? ? -34.05 152.90 7 1 ALA A 132 ? ? -50.65 -70.88 8 1 GLN A 146 ? ? 59.96 79.53 9 1 ASN A 153 ? ? -44.60 -79.11 10 1 THR A 160 ? ? -129.25 -71.95 11 1 THR A 187 ? ? -69.54 -70.11 12 1 ASN A 197 ? ? -174.39 119.43 13 1 SER A 210 ? ? -152.21 39.80 14 1 ILE A 223 ? ? -64.18 78.96 15 1 ALA A 228 ? ? -57.34 -2.34 16 1 ASN A 236 ? ? -110.69 76.24 17 1 GLU A 285 ? ? -47.62 -6.74 18 1 TYR A 302 ? ? -145.22 11.89 19 1 SER A 304 ? ? -97.73 38.55 20 1 ALA A 310 ? ? -47.89 -79.48 21 1 ALA A 315 ? ? -84.86 -88.79 22 1 ALA A 317 ? ? -54.19 -70.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE' AA5 3 water HOH #