HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-05 1Z94 TITLE X-RAY CRYSTAL STRUCTURE OF PROTEIN CV1439 FROM CHROMOBACTERIUM TITLE 2 VIOLACEUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CVR12. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 243365; SOURCE 4 STRAIN: ATCC 12472; SOURCE 5 GENE: CV1439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21 KEYWDS HYPOTHETICAL PROTEIN, NESG, CV1439, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,S.M.VOROBIEV,W.YONG,F.FOROUHAR,R.XIO,L.-C.MA,T.ACTON, AUTHOR 2 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 13-JUL-11 1Z94 1 VERSN REVDAT 2 24-FEB-09 1Z94 1 VERSN REVDAT 1 10-MAY-05 1Z94 0 JRNL AUTH A.KUZIN,S.M.VOROBIEV,W.YONG,F.FOROUHAR,R.XIO,L.-C.MA, JRNL AUTH 2 T.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN CV1439 FROM JRNL TITL 2 CHROMOBACTERIUM VIOLACEUM. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET CVR12. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 322286.600 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 121816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 11979 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 16699 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1776 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.60000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : 5.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.92 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 55.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129114 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.06300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.06300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.54750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.12350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.54750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.12350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.06300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.54750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.12350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.06300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.54750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.12350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.09500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 192.18900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 90 REMARK 465 LEU A 91 REMARK 465 PRO A 92 REMARK 465 MET A 145 REMARK 465 PRO A 146 REMARK 465 GLY A 147 REMARK 465 MET B 145 REMARK 465 PRO B 146 REMARK 465 GLY B 147 REMARK 465 MSE C 1 REMARK 465 MET C 145 REMARK 465 PRO C 146 REMARK 465 GLY C 147 REMARK 465 MSE D 1 REMARK 465 MET D 145 REMARK 465 PRO D 146 REMARK 465 GLY D 147 REMARK 465 MSE E 1 REMARK 465 ASP E 88 REMARK 465 ALA E 89 REMARK 465 GLY E 90 REMARK 465 LEU E 91 REMARK 465 PRO E 92 REMARK 465 MET E 145 REMARK 465 PRO E 146 REMARK 465 GLY E 147 REMARK 465 MSE F 1 REMARK 465 MET F 145 REMARK 465 PRO F 146 REMARK 465 GLY F 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 88 N - CA - C ANGL. DEV. = 22.5 DEGREES REMARK 500 GLY F 90 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 LEU F 91 N - CA - CB ANGL. DEV. = -22.3 DEGREES REMARK 500 LEU F 91 N - CA - C ANGL. DEV. = 33.7 DEGREES REMARK 500 PRO F 92 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 PRO F 92 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 GLY F 93 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 59.02 -90.19 REMARK 500 HIS A 44 55.99 -151.44 REMARK 500 GLU A 78 -40.85 -136.35 REMARK 500 ASP A 87 45.35 -80.34 REMARK 500 ASN B 3 20.90 47.59 REMARK 500 HIS B 44 75.63 -151.49 REMARK 500 PRO B 76 119.49 -37.75 REMARK 500 GLU B 78 -51.35 -129.46 REMARK 500 HIS C 44 55.51 -145.38 REMARK 500 PRO C 76 120.88 -37.37 REMARK 500 GLU C 78 -38.51 -141.02 REMARK 500 LEU C 91 54.49 -142.06 REMARK 500 PRO D 76 124.50 -37.05 REMARK 500 GLU D 78 -38.67 -139.48 REMARK 500 PRO E 34 178.67 -58.40 REMARK 500 HIS E 44 64.24 -150.65 REMARK 500 PRO E 76 123.39 -38.61 REMARK 500 GLU E 78 -43.70 -138.52 REMARK 500 PRO F 34 -178.44 -66.23 REMARK 500 HIS F 44 62.64 -151.28 REMARK 500 PRO F 76 112.76 -36.82 REMARK 500 GLU F 78 -42.84 -138.44 REMARK 500 ASP F 87 17.05 -141.64 REMARK 500 ASP F 88 -88.31 -119.03 REMARK 500 LEU F 91 -93.13 -103.03 REMARK 500 PRO F 92 115.51 -9.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY F 90 -12.63 REMARK 500 LEU F 91 11.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP F 87 23.1 L L OUTSIDE RANGE REMARK 500 ASP F 88 22.8 L L OUTSIDE RANGE REMARK 500 LEU F 91 19.4 L L OUTSIDE RANGE REMARK 500 PRO F 92 21.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 148 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 232 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 237 DISTANCE = 17.48 ANGSTROMS REMARK 525 HOH C 207 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C 215 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH C 218 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH E 204 DISTANCE = 10.86 ANGSTROMS REMARK 525 HOH E 205 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH F 207 DISTANCE = 9.08 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CVR12 RELATED DB: TARGETDB DBREF 1Z94 A 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 DBREF 1Z94 B 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 DBREF 1Z94 C 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 DBREF 1Z94 D 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 DBREF 1Z94 E 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 DBREF 1Z94 F 1 147 UNP Q7NY36 Q7NY36_CHRVO 1 147 SEQADV 1Z94 MSE A 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE A 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE A 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQADV 1Z94 MSE B 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE B 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE B 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQADV 1Z94 MSE C 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE C 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE C 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQADV 1Z94 MSE D 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE D 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE D 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQADV 1Z94 MSE E 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE E 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE E 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQADV 1Z94 MSE F 1 UNP Q7NY36 MET 1 MODIFIED RESIDUE SEQADV 1Z94 MSE F 54 UNP Q7NY36 MET 54 MODIFIED RESIDUE SEQADV 1Z94 MSE F 95 UNP Q7NY36 MET 95 MODIFIED RESIDUE SEQRES 1 A 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 A 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 A 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 A 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 A 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 A 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 A 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 A 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 A 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 A 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 A 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 A 147 ASP MET PRO GLY SEQRES 1 B 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 B 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 B 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 B 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 B 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 B 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 B 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 B 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 B 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 B 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 B 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 B 147 ASP MET PRO GLY SEQRES 1 C 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 C 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 C 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 C 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 C 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 C 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 C 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 C 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 C 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 C 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 C 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 C 147 ASP MET PRO GLY SEQRES 1 D 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 D 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 D 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 D 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 D 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 D 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 D 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 D 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 D 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 D 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 D 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 D 147 ASP MET PRO GLY SEQRES 1 E 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 E 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 E 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 E 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 E 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 E 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 E 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 E 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 E 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 E 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 E 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 E 147 ASP MET PRO GLY SEQRES 1 F 147 MSE PRO ASN THR ILE ARG LEU HIS ARG VAL LEU SER ALA SEQRES 2 F 147 PRO PRO GLU ARG VAL TYR ARG ALA PHE LEU ASP PRO LEU SEQRES 3 F 147 ALA LEU ALA LYS TRP LEU PRO PRO GLU GLY PHE VAL CYS SEQRES 4 F 147 LYS VAL LEU GLU HIS ASP ALA ARG VAL GLY GLY ALA TYR SEQRES 5 F 147 LYS MSE GLU PHE LEU ALA PHE ALA SER GLY GLN LYS HIS SEQRES 6 F 147 ALA PHE GLY GLY ARG TYR LEU GLU LEU VAL PRO GLY GLU SEQRES 7 F 147 ARG ILE ARG TYR THR ASP ARG PHE ASP ASP ALA GLY LEU SEQRES 8 F 147 PRO GLY ASP MSE ILE THR THR ILE THR LEU ALA PRO LEU SEQRES 9 F 147 SER CYS GLY ALA ASP LEU SER ILE VAL GLN GLU GLY ILE SEQRES 10 F 147 PRO ASP ALA ILE PRO PRO GLU ASN CYS TYR LEU GLY TRP SEQRES 11 F 147 GLN GLN SER LEU LYS GLN LEU ALA ALA LEU VAL GLU PRO SEQRES 12 F 147 ASP MET PRO GLY MODRES 1Z94 MSE A 54 MET SELENOMETHIONINE MODRES 1Z94 MSE A 95 MET SELENOMETHIONINE MODRES 1Z94 MSE B 1 MET SELENOMETHIONINE MODRES 1Z94 MSE B 54 MET SELENOMETHIONINE MODRES 1Z94 MSE B 95 MET SELENOMETHIONINE MODRES 1Z94 MSE C 54 MET SELENOMETHIONINE MODRES 1Z94 MSE C 95 MET SELENOMETHIONINE MODRES 1Z94 MSE D 54 MET SELENOMETHIONINE MODRES 1Z94 MSE D 95 MET SELENOMETHIONINE MODRES 1Z94 MSE E 54 MET SELENOMETHIONINE MODRES 1Z94 MSE E 95 MET SELENOMETHIONINE MODRES 1Z94 MSE F 54 MET SELENOMETHIONINE MODRES 1Z94 MSE F 95 MET SELENOMETHIONINE HET MSE A 54 8 HET MSE A 95 8 HET MSE B 1 8 HET MSE B 54 8 HET MSE B 95 8 HET MSE C 54 8 HET MSE C 95 8 HET MSE D 54 8 HET MSE D 95 8 HET MSE E 54 8 HET MSE E 95 8 HET MSE F 54 8 HET MSE F 95 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 7 HOH *408(H2 O) HELIX 1 1 PRO A 14 PHE A 22 1 9 HELIX 2 2 ASP A 24 LEU A 32 1 9 HELIX 3 3 PRO A 122 GLU A 142 1 21 HELIX 4 4 PRO B 14 ASP B 24 1 11 HELIX 5 5 ASP B 24 LEU B 32 1 9 HELIX 6 6 PRO B 122 GLU B 142 1 21 HELIX 7 7 PRO C 14 ASP C 24 1 11 HELIX 8 8 ASP C 24 LEU C 32 1 9 HELIX 9 9 PRO C 122 GLU C 142 1 21 HELIX 10 10 PRO D 14 PHE D 22 1 9 HELIX 11 11 ASP D 24 LEU D 32 1 9 HELIX 12 12 PRO D 122 GLU D 142 1 21 HELIX 13 13 PRO E 14 ASP E 24 1 11 HELIX 14 14 ASP E 24 LEU E 32 1 9 HELIX 15 15 PRO E 122 GLU E 142 1 21 HELIX 16 16 PRO F 14 ASP F 24 1 11 HELIX 17 17 ASP F 24 LEU F 32 1 9 HELIX 18 18 PRO F 122 GLU F 142 1 21 SHEET 1 A 7 ILE A 5 LEU A 11 0 SHEET 2 A 7 GLY A 107 GLU A 115 -1 O LEU A 110 N ARG A 9 SHEET 3 A 7 MSE A 95 LEU A 104 -1 N ILE A 96 O GLU A 115 SHEET 4 A 7 ARG A 79 PHE A 86 -1 N ILE A 80 O ILE A 99 SHEET 5 A 7 LYS A 64 VAL A 75 -1 N VAL A 75 O ARG A 79 SHEET 6 A 7 ALA A 51 ALA A 58 -1 N MSE A 54 O PHE A 67 SHEET 7 A 7 PHE A 37 HIS A 44 -1 N GLU A 43 O LYS A 53 SHEET 1 B 7 THR B 4 LEU B 11 0 SHEET 2 B 7 ALA B 108 GLU B 115 -1 O ILE B 112 N LEU B 7 SHEET 3 B 7 MSE B 95 PRO B 103 -1 N ILE B 96 O GLU B 115 SHEET 4 B 7 ARG B 79 PHE B 86 -1 N ILE B 80 O ILE B 99 SHEET 5 B 7 LYS B 64 VAL B 75 -1 N LEU B 72 O ARG B 81 SHEET 6 B 7 ALA B 51 ALA B 58 -1 N PHE B 56 O HIS B 65 SHEET 7 B 7 PHE B 37 HIS B 44 -1 N VAL B 38 O LEU B 57 SHEET 1 C 7 ASN C 3 LEU C 11 0 SHEET 2 C 7 GLY C 107 ILE C 117 -1 O ALA C 108 N LEU C 11 SHEET 3 C 7 MSE C 95 LEU C 104 -1 N ILE C 96 O GLU C 115 SHEET 4 C 7 ARG C 79 PHE C 86 -1 N ILE C 80 O ILE C 99 SHEET 5 C 7 LYS C 64 VAL C 75 -1 N LEU C 72 O ARG C 81 SHEET 6 C 7 ALA C 51 ALA C 58 -1 N TYR C 52 O GLY C 69 SHEET 7 C 7 PHE C 37 HIS C 44 -1 N GLU C 43 O LYS C 53 SHEET 1 D 7 ASN D 3 LEU D 11 0 SHEET 2 D 7 GLY D 107 ILE D 117 -1 O GLN D 114 N ILE D 5 SHEET 3 D 7 MSE D 95 LEU D 104 -1 N ALA D 102 O ASP D 109 SHEET 4 D 7 ARG D 79 PHE D 86 -1 N ASP D 84 O MSE D 95 SHEET 5 D 7 LYS D 64 VAL D 75 -1 N LEU D 72 O ARG D 81 SHEET 6 D 7 ALA D 51 ALA D 58 -1 N MSE D 54 O PHE D 67 SHEET 7 D 7 PHE D 37 HIS D 44 -1 N GLU D 43 O LYS D 53 SHEET 1 E 7 ASN E 3 LEU E 11 0 SHEET 2 E 7 GLY E 107 ILE E 117 -1 O ALA E 108 N LEU E 11 SHEET 3 E 7 ILE E 96 LEU E 104 -1 N ILE E 96 O GLU E 115 SHEET 4 E 7 ARG E 79 TYR E 82 -1 N ILE E 80 O ILE E 99 SHEET 5 E 7 LYS E 64 VAL E 75 -1 N LEU E 72 O ARG E 81 SHEET 6 E 7 ALA E 51 ALA E 58 -1 N PHE E 56 O HIS E 65 SHEET 7 E 7 PHE E 37 HIS E 44 -1 N GLU E 43 O LYS E 53 SHEET 1 F 7 ASN F 3 LEU F 11 0 SHEET 2 F 7 GLY F 107 ILE F 117 -1 O LEU F 110 N ARG F 9 SHEET 3 F 7 MSE F 95 LEU F 104 -1 N THR F 98 O VAL F 113 SHEET 4 F 7 ARG F 79 PHE F 86 -1 N ILE F 80 O ILE F 99 SHEET 5 F 7 LYS F 64 VAL F 75 -1 N LEU F 72 O ARG F 81 SHEET 6 F 7 ALA F 51 ALA F 58 -1 N PHE F 56 O HIS F 65 SHEET 7 F 7 PHE F 37 HIS F 44 -1 N GLU F 43 O LYS F 53 LINK C LYS A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N GLU A 55 1555 1555 1.33 LINK C ASP A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N ILE A 96 1555 1555 1.33 LINK C MSE B 1 N PRO B 2 1555 1555 1.35 LINK C LYS B 53 N MSE B 54 1555 1555 1.33 LINK C MSE B 54 N GLU B 55 1555 1555 1.32 LINK C ASP B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N ILE B 96 1555 1555 1.32 LINK C LYS C 53 N MSE C 54 1555 1555 1.33 LINK C MSE C 54 N GLU C 55 1555 1555 1.33 LINK C ASP C 94 N MSE C 95 1555 1555 1.33 LINK C MSE C 95 N ILE C 96 1555 1555 1.33 LINK C LYS D 53 N MSE D 54 1555 1555 1.33 LINK C MSE D 54 N GLU D 55 1555 1555 1.32 LINK C ASP D 94 N MSE D 95 1555 1555 1.33 LINK C MSE D 95 N ILE D 96 1555 1555 1.33 LINK C LYS E 53 N MSE E 54 1555 1555 1.33 LINK C MSE E 54 N GLU E 55 1555 1555 1.33 LINK C ASP E 94 N MSE E 95 1555 1555 1.33 LINK C MSE E 95 N ILE E 96 1555 1555 1.33 LINK C LYS F 53 N MSE F 54 1555 1555 1.32 LINK C MSE F 54 N GLU F 55 1555 1555 1.32 LINK C ASP F 94 N MSE F 95 1555 1555 1.33 LINK C MSE F 95 N ILE F 96 1555 1555 1.32 CISPEP 1 MSE B 1 PRO B 2 0 -1.75 CRYST1 105.095 170.247 128.126 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007805 0.00000