data_1Z9L # _entry.id 1Z9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Z9L RCSB RCSB032470 WWPDB D_1000032470 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1Z9O _pdbx_database_related.details '1.9 Angstrom Crystal Structure of the Rat VAP-A MSP Homology Domain in Complex with the Rat ORP1 FFAT Motif' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z9L _pdbx_database_status.recvd_initial_deposition_date 2005-04-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kaiser, S.E.' 1 'Brickner, J.H.' 2 'Reilein, A.R.' 3 'Fenn, T.D.' 4 'Walter, P.' 5 'Brunger, A.T.' 6 # _citation.id primary _citation.title 'Structural basis of FFAT motif-mediated ER targeting' _citation.journal_abbrev Structure _citation.journal_volume 13 _citation.page_first 1035 _citation.page_last 1045 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16004875 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.04.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kaiser, S.E.' 1 primary 'Brickner, J.H.' 2 primary 'Reilein, A.R.' 3 primary 'Fenn, T.D.' 4 primary 'Walter, P.' 5 primary 'Brunger, A.T.' 6 # _cell.entry_id 1Z9L _cell.length_a 48.200 _cell.length_b 48.200 _cell.length_c 112.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z9L _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vesicle-associated membrane protein-associated protein A' 14827.251 1 ? ? ? ? 2 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VAMP- associated protein A, VAMP-A, VAP-A, 33 kDa Vamp-associated protein, VAP-33' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSH(MSE)AKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV (MSE)LQPFDYDPNEKSKHKF(MSE)VQTIFAPPNISD(MSE)EAVWKEAKPDEL(MSE)DSKLRCVFE(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFD YDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MSE n 1 5 ALA n 1 6 LYS n 1 7 HIS n 1 8 GLU n 1 9 GLN n 1 10 ILE n 1 11 LEU n 1 12 VAL n 1 13 LEU n 1 14 ASP n 1 15 PRO n 1 16 PRO n 1 17 SER n 1 18 ASP n 1 19 LEU n 1 20 LYS n 1 21 PHE n 1 22 LYS n 1 23 GLY n 1 24 PRO n 1 25 PHE n 1 26 THR n 1 27 ASP n 1 28 VAL n 1 29 VAL n 1 30 THR n 1 31 THR n 1 32 ASN n 1 33 LEU n 1 34 LYS n 1 35 LEU n 1 36 GLN n 1 37 ASN n 1 38 PRO n 1 39 SER n 1 40 ASP n 1 41 ARG n 1 42 LYS n 1 43 VAL n 1 44 CYS n 1 45 PHE n 1 46 LYS n 1 47 VAL n 1 48 LYS n 1 49 THR n 1 50 THR n 1 51 ALA n 1 52 PRO n 1 53 ARG n 1 54 ARG n 1 55 TYR n 1 56 CYS n 1 57 VAL n 1 58 ARG n 1 59 PRO n 1 60 ASN n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 ILE n 1 65 ASP n 1 66 PRO n 1 67 GLY n 1 68 SER n 1 69 ILE n 1 70 VAL n 1 71 THR n 1 72 VAL n 1 73 SER n 1 74 VAL n 1 75 MSE n 1 76 LEU n 1 77 GLN n 1 78 PRO n 1 79 PHE n 1 80 ASP n 1 81 TYR n 1 82 ASP n 1 83 PRO n 1 84 ASN n 1 85 GLU n 1 86 LYS n 1 87 SER n 1 88 LYS n 1 89 HIS n 1 90 LYS n 1 91 PHE n 1 92 MSE n 1 93 VAL n 1 94 GLN n 1 95 THR n 1 96 ILE n 1 97 PHE n 1 98 ALA n 1 99 PRO n 1 100 PRO n 1 101 ASN n 1 102 ILE n 1 103 SER n 1 104 ASP n 1 105 MSE n 1 106 GLU n 1 107 ALA n 1 108 VAL n 1 109 TRP n 1 110 LYS n 1 111 GLU n 1 112 ALA n 1 113 LYS n 1 114 PRO n 1 115 ASP n 1 116 GLU n 1 117 LEU n 1 118 MSE n 1 119 ASP n 1 120 SER n 1 121 LYS n 1 122 LEU n 1 123 ARG n 1 124 CYS n 1 125 VAL n 1 126 PHE n 1 127 GLU n 1 128 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene 'Vapa, Vap33' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VAPA_RAT _struct_ref.pdbx_db_accession Q9Z270 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Z270 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z9L GLY A 1 ? UNP Q9Z270 ? ? 'CLONING ARTIFACT' -2 1 1 1Z9L SER A 2 ? UNP Q9Z270 ? ? 'CLONING ARTIFACT' -1 2 1 1Z9L HIS A 3 ? UNP Q9Z270 ? ? 'CLONING ARTIFACT' 0 3 1 1Z9L MSE A 4 ? UNP Q9Z270 MET 1 'MODIFIED RESIDUE' 1 4 1 1Z9L MSE A 75 ? UNP Q9Z270 MET 72 'MODIFIED RESIDUE' 72 5 1 1Z9L MSE A 92 ? UNP Q9Z270 MET 89 'MODIFIED RESIDUE' 89 6 1 1Z9L MSE A 105 ? UNP Q9Z270 MET 102 'MODIFIED RESIDUE' 102 7 1 1Z9L MSE A 118 ? UNP Q9Z270 MET 115 'MODIFIED RESIDUE' 115 8 1 1Z9L MSE A 128 ? UNP Q9Z270 MET 125 'MODIFIED RESIDUE' 125 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG2000 MME, NaCl, tris buffer, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-07-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9793 1.0 3 0.9649 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9795, 0.9793, 0.9649' # _reflns.entry_id 1Z9L _reflns.observed_criterion_sigma_I 8 _reflns.observed_criterion_sigma_F 8 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.7 _reflns.number_obs 27860 _reflns.number_all 27524 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 17.4 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Z9L _refine.ls_number_reflns_obs 27484 _refine.ls_number_reflns_all 27860 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 824290.49 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 13.58 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.22 _refine.ls_R_factor_all 0.236 _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 2679 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.5 _refine.aniso_B[1][1] 0.66 _refine.aniso_B[2][2] 0.66 _refine.aniso_B[3][3] -1.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.365461 _refine.solvent_model_param_bsol 45.178 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Z9L _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.09 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1043 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1174 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 13.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 4118 _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.percent_reflns_obs 99.3 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error 0.013 _refine_ls_shell.percent_reflns_R_free 10.7 _refine_ls_shell.number_reflns_R_free 494 _refine_ls_shell.number_reflns_obs 4118 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1Z9L _struct.title '1.7 Angstrom Crystal Structure of the Rat VAP-A MSP Homology Domain' _struct.pdbx_descriptor 'Vesicle-associated membrane protein-associated protein A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z9L _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'VAP-A, Cytoplasmic domain, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 51 ? ARG A 53 ? ALA A 48 ARG A 50 5 ? 3 HELX_P HELX_P2 2 ASP A 104 ? GLU A 111 ? ASP A 101 GLU A 108 1 ? 8 HELX_P HELX_P3 3 LYS A 113 ? LEU A 117 ? LYS A 110 LEU A 114 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 3 C ? ? ? 1_555 A MSE 4 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ALA 5 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A VAL 74 C ? ? ? 1_555 A MSE 75 N A ? A VAL 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A VAL 74 C ? ? ? 1_555 A MSE 75 N B ? A VAL 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A MSE 75 C A ? ? 1_555 A LEU 76 N ? ? A MSE 72 A LEU 73 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 75 C B ? ? 1_555 A LEU 76 N ? ? A MSE 72 A LEU 73 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A PHE 91 C ? ? ? 1_555 A MSE 92 N ? ? A PHE 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A MSE 92 C ? ? ? 1_555 A VAL 93 N ? ? A MSE 89 A VAL 90 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? A ASP 104 C ? ? ? 1_555 A MSE 105 N ? ? A ASP 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 105 C ? ? ? 1_555 A GLU 106 N ? ? A MSE 102 A GLU 103 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A LEU 117 C ? ? ? 1_555 A MSE 118 N ? ? A LEU 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? A MSE 118 C ? ? ? 1_555 A ASP 119 N ? ? A MSE 115 A ASP 116 1_555 ? ? ? ? ? ? ? 1.327 ? covale13 covale ? ? A GLU 127 C ? ? ? 1_555 A MSE 128 N ? ? A GLU 124 A MSE 125 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 14 A . ? ASP 11 A PRO 15 A ? PRO 12 A 1 0.43 2 GLY 23 A . ? GLY 20 A PRO 24 A ? PRO 21 A 1 0.36 3 ARG 58 A . ? ARG 55 A PRO 59 A ? PRO 56 A 1 -0.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 12 ? ASP A 14 ? VAL A 9 ASP A 11 A 2 VAL A 29 ? GLN A 36 ? VAL A 26 GLN A 33 A 3 ILE A 69 ? LEU A 76 ? ILE A 66 LEU A 73 A 4 TYR A 55 ? ARG A 58 ? TYR A 52 ARG A 55 B 1 ASP A 18 ? LYS A 22 ? ASP A 15 LYS A 19 B 2 MSE A 118 ? GLU A 127 ? MSE A 115 GLU A 124 B 3 LYS A 90 ? PHE A 97 ? LYS A 87 PHE A 94 B 4 VAL A 43 ? THR A 49 ? VAL A 40 THR A 46 B 5 SER A 61 ? ILE A 64 ? SER A 58 ILE A 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 14 ? N ASP A 11 O LYS A 34 ? O LYS A 31 A 2 3 N VAL A 29 ? N VAL A 26 O LEU A 76 ? O LEU A 73 A 3 4 O MSE A 75 ? O MSE A 72 N CYS A 56 ? N CYS A 53 B 1 2 N LEU A 19 ? N LEU A 16 O ARG A 123 ? O ARG A 120 B 2 3 O MSE A 118 ? O MSE A 115 N THR A 95 ? N THR A 92 B 3 4 O MSE A 92 ? O MSE A 89 N LYS A 48 ? N LYS A 45 B 4 5 N VAL A 43 ? N VAL A 40 O ILE A 64 ? O ILE A 61 # _database_PDB_matrix.entry_id 1Z9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z9L _atom_sites.fract_transf_matrix[1][1] 0.020747 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020747 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008898 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 LYS 6 3 3 LYS LYS A . n A 1 7 HIS 7 4 4 HIS HIS A . n A 1 8 GLU 8 5 5 GLU GLU A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 VAL 12 9 9 VAL VAL A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ASP 14 11 11 ASP ASP A . n A 1 15 PRO 15 12 12 PRO PRO A . n A 1 16 PRO 16 13 13 PRO PRO A . n A 1 17 SER 17 14 14 SER SER A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 PHE 21 18 18 PHE PHE A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 PRO 24 21 21 PRO PRO A . n A 1 25 PHE 25 22 22 PHE PHE A . n A 1 26 THR 26 23 23 THR THR A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 THR 30 27 27 THR THR A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 GLN 36 33 33 GLN GLN A . n A 1 37 ASN 37 34 34 ASN ASN A . n A 1 38 PRO 38 35 35 PRO PRO A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 ASP 40 37 37 ASP ASP A . n A 1 41 ARG 41 38 38 ARG ARG A . n A 1 42 LYS 42 39 39 LYS LYS A . n A 1 43 VAL 43 40 40 VAL VAL A . n A 1 44 CYS 44 41 41 CYS CYS A . n A 1 45 PHE 45 42 42 PHE PHE A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 LYS 48 45 45 LYS LYS A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 THR 50 47 47 THR THR A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 PRO 52 49 49 PRO PRO A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 TYR 55 52 52 TYR TYR A . n A 1 56 CYS 56 53 53 CYS CYS A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 PRO 59 56 56 PRO PRO A . n A 1 60 ASN 60 57 57 ASN ASN A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 VAL 63 60 60 VAL VAL A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 PRO 66 63 63 PRO PRO A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 SER 68 65 65 SER SER A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 VAL 72 69 69 VAL VAL A . n A 1 73 SER 73 70 70 SER SER A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 MSE 75 72 72 MSE MSE A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 GLN 77 74 74 GLN GLN A . n A 1 78 PRO 78 75 75 PRO PRO A . n A 1 79 PHE 79 76 76 PHE PHE A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 PRO 83 80 80 PRO PRO A . n A 1 84 ASN 84 81 81 ASN ASN A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 LYS 86 83 83 LYS LYS A . n A 1 87 SER 87 84 84 SER SER A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 HIS 89 86 86 HIS HIS A . n A 1 90 LYS 90 87 87 LYS LYS A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 MSE 92 89 89 MSE MSE A . n A 1 93 VAL 93 90 90 VAL VAL A . n A 1 94 GLN 94 91 91 GLN GLN A . n A 1 95 THR 95 92 92 THR THR A . n A 1 96 ILE 96 93 93 ILE ILE A . n A 1 97 PHE 97 94 94 PHE PHE A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 PRO 99 96 96 PRO PRO A . n A 1 100 PRO 100 97 97 PRO PRO A . n A 1 101 ASN 101 98 98 ASN ASN A . n A 1 102 ILE 102 99 99 ILE ILE A . n A 1 103 SER 103 100 100 SER SER A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 MSE 105 102 102 MSE MSE A . n A 1 106 GLU 106 103 103 GLU GLU A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 VAL 108 105 105 VAL VAL A . n A 1 109 TRP 109 106 106 TRP TRP A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 GLU 111 108 108 GLU GLU A . n A 1 112 ALA 112 109 109 ALA ALA A . n A 1 113 LYS 113 110 110 LYS LYS A . n A 1 114 PRO 114 111 111 PRO PRO A . n A 1 115 ASP 115 112 112 ASP ASP A . n A 1 116 GLU 116 113 113 GLU GLU A . n A 1 117 LEU 117 114 114 LEU LEU A . n A 1 118 MSE 118 115 115 MSE MSE A . n A 1 119 ASP 119 116 116 ASP ASP A . n A 1 120 SER 120 117 117 SER SER A . n A 1 121 LYS 121 118 118 LYS LYS A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 ARG 123 120 120 ARG ARG A . n A 1 124 CYS 124 121 121 CYS CYS A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 PHE 126 123 123 PHE PHE A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 MSE 128 125 125 MSE MSE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 126 1 HOH HOH A . B 2 HOH 2 127 2 HOH HOH A . B 2 HOH 3 128 3 HOH HOH A . B 2 HOH 4 129 4 HOH HOH A . B 2 HOH 5 130 5 HOH HOH A . B 2 HOH 6 131 6 HOH HOH A . B 2 HOH 7 132 7 HOH HOH A . B 2 HOH 8 133 8 HOH HOH A . B 2 HOH 9 134 9 HOH HOH A . B 2 HOH 10 135 10 HOH HOH A . B 2 HOH 11 136 11 HOH HOH A . B 2 HOH 12 137 12 HOH HOH A . B 2 HOH 13 138 13 HOH HOH A . B 2 HOH 14 139 14 HOH HOH A . B 2 HOH 15 140 15 HOH HOH A . B 2 HOH 16 141 16 HOH HOH A . B 2 HOH 17 142 17 HOH HOH A . B 2 HOH 18 143 18 HOH HOH A . B 2 HOH 19 144 19 HOH HOH A . B 2 HOH 20 145 20 HOH HOH A . B 2 HOH 21 146 21 HOH HOH A . B 2 HOH 22 147 22 HOH HOH A . B 2 HOH 23 148 23 HOH HOH A . B 2 HOH 24 149 24 HOH HOH A . B 2 HOH 25 150 25 HOH HOH A . B 2 HOH 26 151 26 HOH HOH A . B 2 HOH 27 152 27 HOH HOH A . B 2 HOH 28 153 28 HOH HOH A . B 2 HOH 29 154 29 HOH HOH A . B 2 HOH 30 155 30 HOH HOH A . B 2 HOH 31 156 31 HOH HOH A . B 2 HOH 32 157 32 HOH HOH A . B 2 HOH 33 158 33 HOH HOH A . B 2 HOH 34 159 34 HOH HOH A . B 2 HOH 35 160 35 HOH HOH A . B 2 HOH 36 161 36 HOH HOH A . B 2 HOH 37 162 37 HOH HOH A . B 2 HOH 38 163 38 HOH HOH A . B 2 HOH 39 164 39 HOH HOH A . B 2 HOH 40 165 40 HOH HOH A . B 2 HOH 41 166 41 HOH HOH A . B 2 HOH 42 167 42 HOH HOH A . B 2 HOH 43 168 43 HOH HOH A . B 2 HOH 44 169 44 HOH HOH A . B 2 HOH 45 170 45 HOH HOH A . B 2 HOH 46 171 46 HOH HOH A . B 2 HOH 47 172 47 HOH HOH A . B 2 HOH 48 173 48 HOH HOH A . B 2 HOH 49 174 49 HOH HOH A . B 2 HOH 50 175 50 HOH HOH A . B 2 HOH 51 176 51 HOH HOH A . B 2 HOH 52 177 52 HOH HOH A . B 2 HOH 53 178 53 HOH HOH A . B 2 HOH 54 179 54 HOH HOH A . B 2 HOH 55 180 55 HOH HOH A . B 2 HOH 56 181 56 HOH HOH A . B 2 HOH 57 182 57 HOH HOH A . B 2 HOH 58 183 58 HOH HOH A . B 2 HOH 59 184 59 HOH HOH A . B 2 HOH 60 185 60 HOH HOH A . B 2 HOH 61 186 61 HOH HOH A . B 2 HOH 62 187 62 HOH HOH A . B 2 HOH 63 188 63 HOH HOH A . B 2 HOH 64 189 64 HOH HOH A . B 2 HOH 65 190 65 HOH HOH A . B 2 HOH 66 191 66 HOH HOH A . B 2 HOH 67 192 67 HOH HOH A . B 2 HOH 68 193 68 HOH HOH A . B 2 HOH 69 194 69 HOH HOH A . B 2 HOH 70 195 70 HOH HOH A . B 2 HOH 71 196 71 HOH HOH A . B 2 HOH 72 197 72 HOH HOH A . B 2 HOH 73 198 73 HOH HOH A . B 2 HOH 74 199 74 HOH HOH A . B 2 HOH 75 200 75 HOH HOH A . B 2 HOH 76 201 76 HOH HOH A . B 2 HOH 77 202 77 HOH HOH A . B 2 HOH 78 203 78 HOH HOH A . B 2 HOH 79 204 79 HOH HOH A . B 2 HOH 80 205 80 HOH HOH A . B 2 HOH 81 206 81 HOH HOH A . B 2 HOH 82 207 82 HOH HOH A . B 2 HOH 83 208 83 HOH HOH A . B 2 HOH 84 209 84 HOH HOH A . B 2 HOH 85 210 85 HOH HOH A . B 2 HOH 86 211 86 HOH HOH A . B 2 HOH 87 212 87 HOH HOH A . B 2 HOH 88 213 88 HOH HOH A . B 2 HOH 89 214 89 HOH HOH A . B 2 HOH 90 215 90 HOH HOH A . B 2 HOH 91 216 91 HOH HOH A . B 2 HOH 92 217 92 HOH HOH A . B 2 HOH 93 218 93 HOH HOH A . B 2 HOH 94 219 94 HOH HOH A . B 2 HOH 95 220 95 HOH HOH A . B 2 HOH 96 221 96 HOH HOH A . B 2 HOH 97 222 97 HOH HOH A . B 2 HOH 98 223 98 HOH HOH A . B 2 HOH 99 224 99 HOH HOH A . B 2 HOH 100 225 100 HOH HOH A . B 2 HOH 101 226 101 HOH HOH A . B 2 HOH 102 227 102 HOH HOH A . B 2 HOH 103 228 103 HOH HOH A . B 2 HOH 104 229 104 HOH HOH A . B 2 HOH 105 230 105 HOH HOH A . B 2 HOH 106 231 106 HOH HOH A . B 2 HOH 107 232 107 HOH HOH A . B 2 HOH 108 233 108 HOH HOH A . B 2 HOH 109 234 109 HOH HOH A . B 2 HOH 110 235 110 HOH HOH A . B 2 HOH 111 236 111 HOH HOH A . B 2 HOH 112 237 112 HOH HOH A . B 2 HOH 113 238 113 HOH HOH A . B 2 HOH 114 239 114 HOH HOH A . B 2 HOH 115 240 115 HOH HOH A . B 2 HOH 116 241 116 HOH HOH A . B 2 HOH 117 242 117 HOH HOH A . B 2 HOH 118 243 118 HOH HOH A . B 2 HOH 119 244 119 HOH HOH A . B 2 HOH 120 245 120 HOH HOH A . B 2 HOH 121 246 121 HOH HOH A . B 2 HOH 122 247 122 HOH HOH A . B 2 HOH 123 248 123 HOH HOH A . B 2 HOH 124 249 124 HOH HOH A . B 2 HOH 125 250 125 HOH HOH A . B 2 HOH 126 251 126 HOH HOH A . B 2 HOH 127 252 127 HOH HOH A . B 2 HOH 128 253 128 HOH HOH A . B 2 HOH 129 254 129 HOH HOH A . B 2 HOH 130 255 130 HOH HOH A . B 2 HOH 131 256 131 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 72 ? MET SELENOMETHIONINE 3 A MSE 92 A MSE 89 ? MET SELENOMETHIONINE 4 A MSE 105 A MSE 102 ? MET SELENOMETHIONINE 5 A MSE 118 A MSE 115 ? MET SELENOMETHIONINE 6 A MSE 128 A MSE 125 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 CNS phasing . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 14 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -133.81 _pdbx_validate_torsion.psi -35.19 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A HIS 0 ? CG ? A HIS 3 CG 2 1 Y 0 A HIS 0 ? ND1 ? A HIS 3 ND1 3 1 Y 0 A HIS 0 ? CD2 ? A HIS 3 CD2 4 1 Y 0 A HIS 0 ? CE1 ? A HIS 3 CE1 5 1 Y 0 A HIS 0 ? NE2 ? A HIS 3 NE2 6 1 Y 0 A GLU 5 ? CD ? A GLU 8 CD 7 1 Y 0 A GLU 5 ? OE1 ? A GLU 8 OE1 8 1 Y 0 A GLU 5 ? OE2 ? A GLU 8 OE2 9 1 Y 0 A ASP 24 ? OD2 ? A ASP 27 OD2 10 1 Y 0 A ASP 37 ? CG ? A ASP 40 CG 11 1 Y 0 A ASP 37 ? OD1 ? A ASP 40 OD1 12 1 Y 0 A ASP 37 ? OD2 ? A ASP 40 OD2 13 1 Y 0 A LYS 85 ? CG ? A LYS 88 CG 14 1 Y 0 A LYS 85 ? CD ? A LYS 88 CD 15 1 Y 0 A LYS 85 ? CE ? A LYS 88 CE 16 1 Y 0 A LYS 85 ? NZ ? A LYS 88 NZ 17 1 Y 0 A ASP 112 ? OD2 ? A ASP 115 OD2 18 1 Y 0 A ARG 120 ? CD ? A ARG 123 CD 19 1 Y 0 A ARG 120 ? NE ? A ARG 123 NE 20 1 Y 0 A ARG 120 ? CZ ? A ARG 123 CZ 21 1 Y 0 A ARG 120 ? NH1 ? A ARG 123 NH1 22 1 Y 0 A ARG 120 ? NH2 ? A ARG 123 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #