HEADER TRANSFERASE 08-APR-05 1ZBJ TITLE INFERENTIAL STRUCTURE DETERMINATION OF THE FYN SH3 DOMAIN USING NOESY TITLE 2 DATA FROM A 15N,H2 ENRICHED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 83-141; COMPND 5 SYNONYM: P59-FYN, SYN, SLK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.RIEPING,M.HABECK,M.NILGES REVDAT 4 02-MAR-22 1ZBJ 1 REMARK REVDAT 3 24-FEB-09 1ZBJ 1 VERSN REVDAT 2 02-AUG-05 1ZBJ 1 JRNL REVDAT 1 03-MAY-05 1ZBJ 0 JRNL AUTH W.RIEPING,M.HABECK,M.NILGES JRNL TITL INFERENTIAL STRUCTURE DETERMINATION JRNL REF SCIENCE V. 309 303 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 16002620 JRNL DOI 10.1126/SCIENCE.1110428 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.K.MAL,S.J.MATTHEWS,H.KOVACS,I.D.CAMPBELL,J.BOYD REMARK 1 TITL SOME NMR EXPERIMENTS AND A STRUCTURE DETERMINATION EMPLOYING REMARK 1 TITL 2 A [15N,2H] ENRICHED PROTEIN REMARK 1 REF J.BIOMOL.NMR V. 12 259 1998 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 9751998 REMARK 1 DOI 10.1023/A:1008238009056 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ISD 1.0 REMARK 3 AUTHORS : HABECK, RIEPING REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZBJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032532. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : INFERENTIAL STRUCTURE REMARK 210 DETERMINATION, MARKOV CHAIN REMARK 210 MONTE CARLO SAMPLING, REPLICA- REMARK 210 EXCHANGE MONTE CARLO, GIBBS REMARK 210 SAMPLING, HYBRID MONTE CARLO, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : HIGH POSTERIOR PROBABILITY REMARK 210 STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 7 -63.62 -98.30 REMARK 500 1 ARG A 13 50.08 -115.52 REMARK 500 1 LEU A 29 -45.78 -163.03 REMARK 500 1 SER A 31 65.23 -155.47 REMARK 500 1 SER A 32 -67.25 -91.42 REMARK 500 1 GLU A 33 -62.11 -161.79 REMARK 500 1 ASP A 35 -100.58 -151.07 REMARK 500 1 THR A 43 -79.82 -114.06 REMARK 500 1 SER A 52 49.37 -96.97 REMARK 500 1 PRO A 57 -169.30 -79.92 REMARK 500 2 ASP A 16 -68.84 -128.77 REMARK 500 2 LEU A 29 -75.82 -143.82 REMARK 500 2 SER A 31 67.37 -152.49 REMARK 500 2 SER A 32 -92.27 -82.29 REMARK 500 2 GLU A 33 -81.56 -105.66 REMARK 500 2 ASP A 35 -78.90 -147.31 REMARK 500 2 THR A 43 -92.82 -83.30 REMARK 500 2 TYR A 54 36.29 -155.40 REMARK 500 2 VAL A 58 -169.89 -117.99 REMARK 500 3 THR A 2 -63.50 -104.58 REMARK 500 3 LEU A 7 -60.71 -134.58 REMARK 500 3 ARG A 13 68.03 -168.22 REMARK 500 3 PHE A 20 -164.04 -129.78 REMARK 500 3 LEU A 29 -93.63 -155.98 REMARK 500 3 SER A 32 68.15 -156.89 REMARK 500 3 GLU A 33 -77.23 -140.19 REMARK 500 3 ARG A 40 -163.88 -110.88 REMARK 500 3 THR A 43 -60.43 -106.60 REMARK 500 3 THR A 44 -60.83 -93.06 REMARK 500 4 THR A 2 -96.20 -84.64 REMARK 500 4 TYR A 10 85.02 -155.75 REMARK 500 4 ALA A 12 -154.32 -143.87 REMARK 500 4 ARG A 13 59.70 -175.07 REMARK 500 4 ASP A 16 -72.62 -93.62 REMARK 500 4 ASP A 17 99.07 -67.50 REMARK 500 4 LEU A 18 -158.19 -89.21 REMARK 500 4 LEU A 29 -69.00 -158.07 REMARK 500 4 SER A 31 63.72 -167.57 REMARK 500 4 GLU A 33 69.55 65.51 REMARK 500 4 ASP A 35 -73.36 -129.74 REMARK 500 4 THR A 43 -71.14 -94.94 REMARK 500 4 VAL A 58 -169.15 -111.92 REMARK 500 5 ARG A 13 46.79 -155.44 REMARK 500 5 LEU A 29 -73.54 -154.42 REMARK 500 5 SER A 31 86.95 -162.56 REMARK 500 5 SER A 32 -108.42 -92.05 REMARK 500 5 GLU A 33 -78.01 -83.83 REMARK 500 5 ASP A 35 -89.70 -145.59 REMARK 500 5 THR A 47 -165.35 -114.51 REMARK 500 5 SER A 52 58.78 -117.09 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NYF RELATED DB: PDB REMARK 900 NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE REMARK 900 RELATED ID: 1SHF RELATED DB: PDB REMARK 900 FYN PROTO-ONCOGENE TYROSINE KINASE (SH3 DOMAIN) DBREF 1ZBJ A 1 59 UNP P06241 FYN_HUMAN 83 141 SEQRES 1 A 59 VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 2 A 59 THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE SEQRES 3 A 59 GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA SEQRES 4 A 59 ARG SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER SEQRES 5 A 59 ASN TYR VAL ALA PRO VAL ASP SHEET 1 A 2 PHE A 4 VAL A 5 0 SHEET 2 A 2 LYS A 25 PHE A 26 -1 O PHE A 26 N PHE A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1