HEADER    PROTEIN TURNOVER                        10-APR-05   1ZC1              
TITLE     UFD1 EXHIBITS THE AAA-ATPASE FOLD WITH TWO DISTINCT UBIQUITIN         
TITLE    2 INTERACTION SITES                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UBIQUITIN FUSION DEGRADATION PROTEIN 1;                    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: N DOMAIN, RESIDUES 1-208;                                  
COMPND   5 SYNONYM: UB FUSION PROTEIN 1, POLYMERASE-INTERACTING PROTEIN 3;      
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: UFD1, PIP3;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    UFD1, DOUBLE-PSI-BETA-BARREL, PROTEIN TURNOVER                        
EXPDTA    SOLUTION NMR                                                          
NUMMDL    15                                                                    
AUTHOR    S.PARK,R.ISAACSON,H.T.KIM,P.A.SILVER,G.WAGNER                         
REVDAT   4   22-MAY-24 1ZC1    1       REMARK                                   
REVDAT   3   02-MAR-22 1ZC1    1       REMARK                                   
REVDAT   2   24-FEB-09 1ZC1    1       VERSN                                    
REVDAT   1   26-JUL-05 1ZC1    0                                                
JRNL        AUTH   S.PARK,R.ISAACSON,H.T.KIM,P.A.SILVER,G.WAGNER                
JRNL        TITL   UFD1 EXHIBITS THE AAA-ATPASE FOLD WITH TWO DISTINCT          
JRNL        TITL 2 UBIQUITIN INTERACTION SITES                                  
JRNL        REF    STRUCTURE                     V.  13   995 2005              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   16004872                                                     
JRNL        DOI    10.1016/J.STR.2005.04.013                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.0, CNS 1.0                                     
REMARK   3   AUTHORS     : BRUNGER, A. (CNS), BRUNGER, A. (CNS)                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1ZC1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000032550.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 307                                
REMARK 210  PH                             : 6.0                                
REMARK 210  IONIC STRENGTH                 : 20 MM PHOSPHATE 50MM NACL          
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 0.2MM UFD1                         
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : NULL                               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 750 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX; INOVA                         
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER; VARIAN                     
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 15                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A  85      -78.83    -92.03                                   
REMARK 500  1 LEU A 121      108.32     64.57                                   
REMARK 500  1 SER A 131      135.14     66.79                                   
REMARK 500  1 GLU A 189      -79.94    -90.08                                   
REMARK 500  1 THR A 190       41.41   -168.05                                   
REMARK 500  2 LEU A  85      -79.88    -91.84                                   
REMARK 500  2 SER A 131      137.21     67.87                                   
REMARK 500  2 GLU A 189      -79.94    -90.02                                   
REMARK 500  2 THR A 190       42.87   -161.18                                   
REMARK 500  3 LEU A  85      -80.03    -93.38                                   
REMARK 500  3 LEU A 121      100.77     70.11                                   
REMARK 500  3 VAL A 132       27.21     36.84                                   
REMARK 500  3 VAL A 187       67.83   -170.11                                   
REMARK 500  3 PRO A 205       82.56    -61.86                                   
REMARK 500  4 LEU A  85      -79.07    -90.14                                   
REMARK 500  4 PRO A 108        0.09    -62.61                                   
REMARK 500  4 LEU A 121       92.68     61.23                                   
REMARK 500  4 SER A 131      160.61     56.77                                   
REMARK 500  4 VAL A 187       64.91   -155.05                                   
REMARK 500  5 LEU A  85      -78.16    -91.33                                   
REMARK 500  5 SER A 131      130.68     69.55                                   
REMARK 500  5 VAL A 187      -55.47   -178.16                                   
REMARK 500  5 ILE A 188       -1.84     68.66                                   
REMARK 500  6 PRO A 108       -3.41    -57.75                                   
REMARK 500  6 SER A 131      166.97     71.05                                   
REMARK 500  6 GLU A 189      -79.79    -89.97                                   
REMARK 500  6 THR A 190     -158.70   -169.84                                   
REMARK 500  6 PRO A 205       95.10    -56.70                                   
REMARK 500  7 PRO A  18      160.79    -48.15                                   
REMARK 500  7 LEU A  85      -77.39    -92.62                                   
REMARK 500  7 ILE A  88       -5.73   -141.83                                   
REMARK 500  7 LEU A 121      100.39     67.96                                   
REMARK 500  7 SER A 131      133.28     70.17                                   
REMARK 500  7 GLU A 189      -79.96    -91.03                                   
REMARK 500  7 THR A 190       30.78   -168.97                                   
REMARK 500  8 LEU A  85      -79.05    -92.22                                   
REMARK 500  8 PRO A 108       -1.97    -59.93                                   
REMARK 500  8 VAL A 132       24.36     41.95                                   
REMARK 500  8 VAL A 187      121.36     77.06                                   
REMARK 500  8 ASP A 191       94.57     70.47                                   
REMARK 500  9 ASN A  74      139.59     62.27                                   
REMARK 500  9 LEU A  85      -79.58    -92.75                                   
REMARK 500  9 SER A 131      146.76     60.98                                   
REMARK 500  9 LEU A 174      -70.46    -84.04                                   
REMARK 500  9 ILE A 188      -67.81    -97.18                                   
REMARK 500  9 PRO A 205      107.50    -57.90                                   
REMARK 500 10 PRO A  18      167.45    -49.60                                   
REMARK 500 10 ASN A  74      148.46     61.77                                   
REMARK 500 10 LEU A  85      -79.21    -89.99                                   
REMARK 500 10 SER A 131      131.05     75.90                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      74 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 650                                                                      
REMARK 650  HELIX                                                               
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 700                                                                      
REMARK 700  SHEET                                                               
REMARK 700 THE AUTOMATICALLY GENERATED BETA SHEET NAMING IN THIS PDB            
REMARK 700 FILE IS SLIGHTLY DIFFERENT FROM THOSE IN THE CITATION                
DBREF  1ZC1 A    1   208  UNP    P53044   UFD1_YEAST       1    208             
SEQRES   1 A  208  MET PHE SER GLY PHE SER SER PHE GLY GLY GLY ASN GLY          
SEQRES   2 A  208  PHE VAL ASN MET PRO GLN THR PHE GLU GLU PHE PHE ARG          
SEQRES   3 A  208  CYS TYR PRO ILE ALA MET MET ASN ASP ARG ILE ARG LYS          
SEQRES   4 A  208  ASP ASP ALA ASN PHE GLY GLY LYS ILE PHE LEU PRO PRO          
SEQRES   5 A  208  SER ALA LEU SER LYS LEU SER MET LEU ASN ILE ARG TYR          
SEQRES   6 A  208  PRO MET LEU PHE LYS LEU THR ALA ASN GLU THR GLY ARG          
SEQRES   7 A  208  VAL THR HIS GLY GLY VAL LEU GLU PHE ILE ALA GLU GLU          
SEQRES   8 A  208  GLY ARG VAL TYR LEU PRO GLN TRP MET MET GLU THR LEU          
SEQRES   9 A  208  GLY ILE GLN PRO GLY SER LEU LEU GLN ILE SER SER THR          
SEQRES  10 A  208  ASP VAL PRO LEU GLY GLN PHE VAL LYS LEU GLU PRO GLN          
SEQRES  11 A  208  SER VAL ASP PHE LEU ASP ILE SER ASP PRO LYS ALA VAL          
SEQRES  12 A  208  LEU GLU ASN VAL LEU ARG ASN PHE SER THR LEU THR VAL          
SEQRES  13 A  208  ASP ASP VAL ILE GLU ILE SER TYR ASN GLY LYS THR PHE          
SEQRES  14 A  208  LYS ILE LYS ILE LEU GLU VAL LYS PRO GLU SER SER SER          
SEQRES  15 A  208  LYS SER ILE CYS VAL ILE GLU THR ASP LEU VAL THR ASP          
SEQRES  16 A  208  PHE ALA PRO PRO VAL GLY TYR VAL GLU PRO ASP TYR LYS          
HELIX    1   1 ASP A   40  PHE A   44  5                                   5    
HELIX    2   2 PRO A   52  MET A   60  1                                   9    
HELIX    3   3 GLN A   98  LEU A  104  1                                   7    
HELIX    4   4 SER A  131  LEU A  135  1                                   5    
HELIX    5   5 PRO A  140  ASN A  150  1                                  11    
SHEET    1   A 7 GLN A  19  PRO A  29  0                                        
SHEET    2   A 7 ARG A  93  LEU A  96  1  O  VAL A  94   N  TYR A  28           
SHEET    3   A 7 LYS A  47  LEU A  50 -1  N  PHE A  49   O  TYR A  95           
SHEET    4   A 7 VAL A  79  PHE A  87  1  O  LEU A  85   N  ILE A  48           
SHEET    5   A 7 PHE A  69  THR A  72 -1  N  LEU A  71   O  THR A  80           
SHEET    6   A 7 LEU A 111  ASP A 118 -1  O  SER A 115   N  LYS A  70           
SHEET    7   A 7 GLN A  19  PRO A  29 -1  N  PHE A  21   O  SER A 116           
SHEET    1   B 4 VAL A 159  TYR A 164  0                                        
SHEET    2   B 4 LYS A 167  LYS A 177 -1  O  PHE A 169   N  ILE A 162           
SHEET    3   B 4 PHE A 124  GLU A 128 -1  N  PHE A 124   O  LYS A 177           
SHEET    4   B 4 VAL A 193  PHE A 196  1  O  VAL A 193   N  VAL A 125           
SHEET    1   C 2 LEU A 154  THR A 155  0                                        
SHEET    2   C 2 SER A 184  ILE A 185 -1  O  ILE A 185   N  LEU A 154           
CISPEP   1 TYR A   65    PRO A   66          1         0.86                     
CISPEP   2 TYR A   65    PRO A   66          2         0.53                     
CISPEP   3 TYR A   65    PRO A   66          3         0.70                     
CISPEP   4 TYR A   65    PRO A   66          4         0.73                     
CISPEP   5 TYR A   65    PRO A   66          5         0.73                     
CISPEP   6 TYR A   65    PRO A   66          6         0.67                     
CISPEP   7 TYR A   65    PRO A   66          7         0.68                     
CISPEP   8 TYR A   65    PRO A   66          8         0.72                     
CISPEP   9 TYR A   65    PRO A   66          9         0.12                     
CISPEP  10 TYR A   65    PRO A   66         10         0.42                     
CISPEP  11 TYR A   65    PRO A   66         11         0.73                     
CISPEP  12 TYR A   65    PRO A   66         12         0.32                     
CISPEP  13 TYR A   65    PRO A   66         13         0.62                     
CISPEP  14 TYR A   65    PRO A   66         14         0.41                     
CISPEP  15 TYR A   65    PRO A   66         15         0.90                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1