data_1ZCI # _entry.id 1ZCI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZCI pdb_00001zci 10.2210/pdb1zci/pdb NDB UR0058 ? ? RCSB RCSB032567 ? ? WWPDB D_1000032567 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-31 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.conn_type_id' 17 4 'Structure model' '_struct_conn.id' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZCI _pdbx_database_status.recvd_initial_deposition_date 2005-04-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1XP7 'HIV-1 subtype F genomic RNA Dimerization Initiation Site' unspecified PDB 1Y3S 'HIV-1 DIS RNA subtype F- MPD form' unspecified PDB 1Y3O 'HIV-1 DIS RNA subtype F- Mn soaked' unspecified PDB 1YXP 'HIV-1 DIS RNA subtype F- Zn soaked' unspecified PDB 1XPE 'HIV-1 subtype B genomic RNA Dimerization Initiation Site' unspecified PDB 1XPF 'HIV-1 subtype A genomic RNA Dimerization Initiation Site' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Dumas, P.' 2 # _citation.id primary _citation.title 'Polymorphism of Bulged-out Residues in HIV-1 RNA DIS Kissing Complex and Structure Comparison with Solution Studies.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 356 _citation.page_first 771 _citation.page_last 782 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16403527 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.12.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Dumas, P.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'" 7465.368 4 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 water nat water 18.015 307 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-1 DIS RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'C(5BU)UGCUGAAGUGCACACAGCAAG' _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 5BU n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 5BU 2 2 2 5BU 5BU A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 5BU 2 2 2 5BU 5BU B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n C 1 1 C 1 1 1 C C C . n C 1 2 5BU 2 2 2 5BU 5BU C . n C 1 3 U 3 3 3 U U C . n C 1 4 G 4 4 4 G G C . n C 1 5 C 5 5 5 C C C . n C 1 6 U 6 6 6 U U C . n C 1 7 G 7 7 7 G G C . n C 1 8 A 8 8 8 A A C . n C 1 9 A 9 9 9 A A C . n C 1 10 G 10 10 10 G G C . n C 1 11 U 11 11 11 U U C . n C 1 12 G 12 12 12 G G C . n C 1 13 C 13 13 13 C C C . n C 1 14 A 14 14 14 A A C . n C 1 15 C 15 15 15 C C C . n C 1 16 A 16 16 16 A A C . n C 1 17 C 17 17 17 C C C . n C 1 18 A 18 18 18 A A C . n C 1 19 G 19 19 19 G G C . n C 1 20 C 20 20 20 C C C . n C 1 21 A 21 21 21 A A C . n C 1 22 A 22 22 22 A A C . n C 1 23 G 23 23 23 G G C . n D 1 1 C 1 1 1 C C D . n D 1 2 5BU 2 2 2 5BU 5BU D . n D 1 3 U 3 3 3 U U D . n D 1 4 G 4 4 4 G G D . n D 1 5 C 5 5 5 C C D . n D 1 6 U 6 6 6 U U D . n D 1 7 G 7 7 7 G G D . n D 1 8 A 8 8 8 A A D . n D 1 9 A 9 9 9 A A D . n D 1 10 G 10 10 10 G G D . n D 1 11 U 11 11 11 U U D . n D 1 12 G 12 12 12 G G D . n D 1 13 C 13 13 13 C C D . n D 1 14 A 14 14 14 A A D . n D 1 15 C 15 15 15 C C D . n D 1 16 A 16 16 16 A A D . n D 1 17 C 17 17 17 C C D . n D 1 18 A 18 18 18 A A D . n D 1 19 G 19 19 19 G G D . n D 1 20 C 20 20 20 C C D . n D 1 21 A 21 21 21 A A D . n D 1 22 A 22 22 22 A A D . n D 1 23 G 23 23 23 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 K 1 24 1 K K A . F 2 K 1 24 3 K K B . G 2 K 1 24 4 K K C . H 2 K 1 24 2 K K D . I 3 HOH 1 25 6 HOH HOH A . I 3 HOH 2 26 16 HOH HOH A . I 3 HOH 3 27 17 HOH HOH A . I 3 HOH 4 28 20 HOH HOH A . I 3 HOH 5 29 27 HOH HOH A . I 3 HOH 6 30 29 HOH HOH A . I 3 HOH 7 31 31 HOH HOH A . I 3 HOH 8 32 33 HOH HOH A . I 3 HOH 9 33 39 HOH HOH A . I 3 HOH 10 34 42 HOH HOH A . I 3 HOH 11 35 45 HOH HOH A . I 3 HOH 12 36 49 HOH HOH A . I 3 HOH 13 37 50 HOH HOH A . I 3 HOH 14 38 53 HOH HOH A . I 3 HOH 15 39 55 HOH HOH A . I 3 HOH 16 40 56 HOH HOH A . I 3 HOH 17 41 63 HOH HOH A . I 3 HOH 18 42 70 HOH HOH A . I 3 HOH 19 43 76 HOH HOH A . I 3 HOH 20 44 83 HOH HOH A . I 3 HOH 21 45 84 HOH HOH A . I 3 HOH 22 46 85 HOH HOH A . I 3 HOH 23 47 87 HOH HOH A . I 3 HOH 24 48 88 HOH HOH A . I 3 HOH 25 49 89 HOH HOH A . I 3 HOH 26 50 90 HOH HOH A . I 3 HOH 27 51 95 HOH HOH A . I 3 HOH 28 52 102 HOH HOH A . I 3 HOH 29 53 103 HOH HOH A . I 3 HOH 30 54 106 HOH HOH A . I 3 HOH 31 55 110 HOH HOH A . I 3 HOH 32 56 112 HOH HOH A . I 3 HOH 33 57 120 HOH HOH A . I 3 HOH 34 58 125 HOH HOH A . I 3 HOH 35 59 126 HOH HOH A . I 3 HOH 36 60 127 HOH HOH A . I 3 HOH 37 61 135 HOH HOH A . I 3 HOH 38 62 138 HOH HOH A . I 3 HOH 39 63 140 HOH HOH A . I 3 HOH 40 64 146 HOH HOH A . I 3 HOH 41 65 149 HOH HOH A . I 3 HOH 42 66 152 HOH HOH A . I 3 HOH 43 67 153 HOH HOH A . I 3 HOH 44 68 157 HOH HOH A . I 3 HOH 45 69 158 HOH HOH A . I 3 HOH 46 70 160 HOH HOH A . I 3 HOH 47 71 167 HOH HOH A . I 3 HOH 48 72 168 HOH HOH A . I 3 HOH 49 73 171 HOH HOH A . I 3 HOH 50 74 178 HOH HOH A . I 3 HOH 51 75 181 HOH HOH A . I 3 HOH 52 76 188 HOH HOH A . I 3 HOH 53 77 190 HOH HOH A . I 3 HOH 54 78 194 HOH HOH A . I 3 HOH 55 79 200 HOH HOH A . I 3 HOH 56 80 201 HOH HOH A . I 3 HOH 57 81 203 HOH HOH A . I 3 HOH 58 82 204 HOH HOH A . I 3 HOH 59 83 219 HOH HOH A . I 3 HOH 60 84 223 HOH HOH A . I 3 HOH 61 85 224 HOH HOH A . I 3 HOH 62 86 236 HOH HOH A . I 3 HOH 63 87 242 HOH HOH A . I 3 HOH 64 88 249 HOH HOH A . I 3 HOH 65 89 252 HOH HOH A . I 3 HOH 66 90 256 HOH HOH A . I 3 HOH 67 91 258 HOH HOH A . I 3 HOH 68 92 259 HOH HOH A . I 3 HOH 69 93 262 HOH HOH A . I 3 HOH 70 94 264 HOH HOH A . I 3 HOH 71 95 265 HOH HOH A . I 3 HOH 72 96 267 HOH HOH A . I 3 HOH 73 97 272 HOH HOH A . I 3 HOH 74 98 276 HOH HOH A . I 3 HOH 75 99 281 HOH HOH A . I 3 HOH 76 100 288 HOH HOH A . I 3 HOH 77 101 290 HOH HOH A . I 3 HOH 78 102 291 HOH HOH A . I 3 HOH 79 103 305 HOH HOH A . I 3 HOH 80 104 308 HOH HOH A . I 3 HOH 81 105 311 HOH HOH A . I 3 HOH 82 106 312 HOH HOH A . I 3 HOH 83 107 313 HOH HOH A . I 3 HOH 84 108 314 HOH HOH A . J 3 HOH 1 25 5 HOH HOH B . J 3 HOH 2 26 9 HOH HOH B . J 3 HOH 3 27 12 HOH HOH B . J 3 HOH 4 28 24 HOH HOH B . J 3 HOH 5 29 32 HOH HOH B . J 3 HOH 6 30 41 HOH HOH B . J 3 HOH 7 31 43 HOH HOH B . J 3 HOH 8 32 67 HOH HOH B . J 3 HOH 9 33 68 HOH HOH B . J 3 HOH 10 34 78 HOH HOH B . J 3 HOH 11 35 80 HOH HOH B . J 3 HOH 12 36 81 HOH HOH B . J 3 HOH 13 37 91 HOH HOH B . J 3 HOH 14 38 94 HOH HOH B . J 3 HOH 15 39 96 HOH HOH B . J 3 HOH 16 40 98 HOH HOH B . J 3 HOH 17 41 100 HOH HOH B . J 3 HOH 18 42 109 HOH HOH B . J 3 HOH 19 43 116 HOH HOH B . J 3 HOH 20 44 117 HOH HOH B . J 3 HOH 21 45 123 HOH HOH B . J 3 HOH 22 46 124 HOH HOH B . J 3 HOH 23 47 131 HOH HOH B . J 3 HOH 24 48 132 HOH HOH B . J 3 HOH 25 49 133 HOH HOH B . J 3 HOH 26 50 134 HOH HOH B . J 3 HOH 27 51 139 HOH HOH B . J 3 HOH 28 52 142 HOH HOH B . J 3 HOH 29 53 148 HOH HOH B . J 3 HOH 30 54 156 HOH HOH B . J 3 HOH 31 55 162 HOH HOH B . J 3 HOH 32 56 164 HOH HOH B . J 3 HOH 33 57 170 HOH HOH B . J 3 HOH 34 58 175 HOH HOH B . J 3 HOH 35 59 177 HOH HOH B . J 3 HOH 36 60 180 HOH HOH B . J 3 HOH 37 61 182 HOH HOH B . J 3 HOH 38 62 185 HOH HOH B . J 3 HOH 39 63 187 HOH HOH B . J 3 HOH 40 64 189 HOH HOH B . J 3 HOH 41 65 202 HOH HOH B . J 3 HOH 42 66 210 HOH HOH B . J 3 HOH 43 67 212 HOH HOH B . J 3 HOH 44 68 215 HOH HOH B . J 3 HOH 45 69 222 HOH HOH B . J 3 HOH 46 70 226 HOH HOH B . J 3 HOH 47 71 230 HOH HOH B . J 3 HOH 48 72 241 HOH HOH B . J 3 HOH 49 73 245 HOH HOH B . J 3 HOH 50 74 247 HOH HOH B . J 3 HOH 51 75 251 HOH HOH B . J 3 HOH 52 76 261 HOH HOH B . J 3 HOH 53 77 268 HOH HOH B . J 3 HOH 54 78 277 HOH HOH B . J 3 HOH 55 79 278 HOH HOH B . J 3 HOH 56 80 282 HOH HOH B . J 3 HOH 57 81 285 HOH HOH B . J 3 HOH 58 82 286 HOH HOH B . J 3 HOH 59 83 289 HOH HOH B . J 3 HOH 60 84 296 HOH HOH B . J 3 HOH 61 85 299 HOH HOH B . J 3 HOH 62 86 310 HOH HOH B . J 3 HOH 63 87 315 HOH HOH B . J 3 HOH 64 88 316 HOH HOH B . J 3 HOH 65 89 321 HOH HOH B . K 3 HOH 1 25 10 HOH HOH C . K 3 HOH 2 26 13 HOH HOH C . K 3 HOH 3 27 14 HOH HOH C . K 3 HOH 4 28 18 HOH HOH C . K 3 HOH 5 29 19 HOH HOH C . K 3 HOH 6 30 22 HOH HOH C . K 3 HOH 7 31 23 HOH HOH C . K 3 HOH 8 32 25 HOH HOH C . K 3 HOH 9 33 26 HOH HOH C . K 3 HOH 10 34 28 HOH HOH C . K 3 HOH 11 35 34 HOH HOH C . K 3 HOH 12 36 36 HOH HOH C . K 3 HOH 13 37 38 HOH HOH C . K 3 HOH 14 38 48 HOH HOH C . K 3 HOH 15 39 51 HOH HOH C . K 3 HOH 16 40 54 HOH HOH C . K 3 HOH 17 41 58 HOH HOH C . K 3 HOH 18 42 59 HOH HOH C . K 3 HOH 19 43 61 HOH HOH C . K 3 HOH 20 44 65 HOH HOH C . K 3 HOH 21 45 69 HOH HOH C . K 3 HOH 22 46 71 HOH HOH C . K 3 HOH 23 47 72 HOH HOH C . K 3 HOH 24 48 73 HOH HOH C . K 3 HOH 25 49 77 HOH HOH C . K 3 HOH 26 50 82 HOH HOH C . K 3 HOH 27 51 86 HOH HOH C . K 3 HOH 28 52 92 HOH HOH C . K 3 HOH 29 53 93 HOH HOH C . K 3 HOH 30 54 99 HOH HOH C . K 3 HOH 31 55 105 HOH HOH C . K 3 HOH 32 56 107 HOH HOH C . K 3 HOH 33 57 113 HOH HOH C . K 3 HOH 34 58 118 HOH HOH C . K 3 HOH 35 59 129 HOH HOH C . K 3 HOH 36 60 130 HOH HOH C . K 3 HOH 37 61 141 HOH HOH C . K 3 HOH 38 62 143 HOH HOH C . K 3 HOH 39 63 144 HOH HOH C . K 3 HOH 40 64 145 HOH HOH C . K 3 HOH 41 65 150 HOH HOH C . K 3 HOH 42 66 151 HOH HOH C . K 3 HOH 43 67 155 HOH HOH C . K 3 HOH 44 68 159 HOH HOH C . K 3 HOH 45 69 161 HOH HOH C . K 3 HOH 46 70 165 HOH HOH C . K 3 HOH 47 71 172 HOH HOH C . K 3 HOH 48 72 173 HOH HOH C . K 3 HOH 49 73 174 HOH HOH C . K 3 HOH 50 74 183 HOH HOH C . K 3 HOH 51 75 193 HOH HOH C . K 3 HOH 52 76 198 HOH HOH C . K 3 HOH 53 77 199 HOH HOH C . K 3 HOH 54 78 205 HOH HOH C . K 3 HOH 55 79 209 HOH HOH C . K 3 HOH 56 80 211 HOH HOH C . K 3 HOH 57 81 214 HOH HOH C . K 3 HOH 58 82 216 HOH HOH C . K 3 HOH 59 83 218 HOH HOH C . K 3 HOH 60 84 220 HOH HOH C . K 3 HOH 61 85 227 HOH HOH C . K 3 HOH 62 86 228 HOH HOH C . K 3 HOH 63 87 231 HOH HOH C . K 3 HOH 64 88 233 HOH HOH C . K 3 HOH 65 89 253 HOH HOH C . K 3 HOH 66 90 254 HOH HOH C . K 3 HOH 67 91 255 HOH HOH C . K 3 HOH 68 92 257 HOH HOH C . K 3 HOH 69 93 263 HOH HOH C . K 3 HOH 70 94 271 HOH HOH C . K 3 HOH 71 95 275 HOH HOH C . K 3 HOH 72 96 283 HOH HOH C . K 3 HOH 73 97 293 HOH HOH C . K 3 HOH 74 98 294 HOH HOH C . K 3 HOH 75 99 295 HOH HOH C . K 3 HOH 76 100 297 HOH HOH C . K 3 HOH 77 101 298 HOH HOH C . K 3 HOH 78 102 300 HOH HOH C . K 3 HOH 79 103 301 HOH HOH C . K 3 HOH 80 104 303 HOH HOH C . K 3 HOH 81 105 307 HOH HOH C . K 3 HOH 82 106 317 HOH HOH C . K 3 HOH 83 107 318 HOH HOH C . K 3 HOH 84 108 320 HOH HOH C . L 3 HOH 1 25 7 HOH HOH D . L 3 HOH 2 26 8 HOH HOH D . L 3 HOH 3 27 11 HOH HOH D . L 3 HOH 4 28 15 HOH HOH D . L 3 HOH 5 29 21 HOH HOH D . L 3 HOH 6 30 30 HOH HOH D . L 3 HOH 7 31 35 HOH HOH D . L 3 HOH 8 32 37 HOH HOH D . L 3 HOH 9 33 40 HOH HOH D . L 3 HOH 10 34 44 HOH HOH D . L 3 HOH 11 35 46 HOH HOH D . L 3 HOH 12 36 57 HOH HOH D . L 3 HOH 13 37 60 HOH HOH D . L 3 HOH 14 38 62 HOH HOH D . L 3 HOH 15 39 64 HOH HOH D . L 3 HOH 16 40 66 HOH HOH D . L 3 HOH 17 41 74 HOH HOH D . L 3 HOH 18 42 75 HOH HOH D . L 3 HOH 19 43 79 HOH HOH D . L 3 HOH 20 44 97 HOH HOH D . L 3 HOH 21 45 104 HOH HOH D . L 3 HOH 22 46 111 HOH HOH D . L 3 HOH 23 47 114 HOH HOH D . L 3 HOH 24 48 115 HOH HOH D . L 3 HOH 25 49 119 HOH HOH D . L 3 HOH 26 50 121 HOH HOH D . L 3 HOH 27 51 122 HOH HOH D . L 3 HOH 28 52 128 HOH HOH D . L 3 HOH 29 53 136 HOH HOH D . L 3 HOH 30 54 137 HOH HOH D . L 3 HOH 31 55 147 HOH HOH D . L 3 HOH 32 56 154 HOH HOH D . L 3 HOH 33 57 166 HOH HOH D . L 3 HOH 34 58 169 HOH HOH D . L 3 HOH 35 59 184 HOH HOH D . L 3 HOH 36 60 186 HOH HOH D . L 3 HOH 37 61 191 HOH HOH D . L 3 HOH 38 62 192 HOH HOH D . L 3 HOH 39 63 195 HOH HOH D . L 3 HOH 40 64 196 HOH HOH D . L 3 HOH 41 65 197 HOH HOH D . L 3 HOH 42 66 206 HOH HOH D . L 3 HOH 43 67 207 HOH HOH D . L 3 HOH 44 68 208 HOH HOH D . L 3 HOH 45 69 213 HOH HOH D . L 3 HOH 46 70 217 HOH HOH D . L 3 HOH 47 71 221 HOH HOH D . L 3 HOH 48 72 225 HOH HOH D . L 3 HOH 49 73 229 HOH HOH D . L 3 HOH 50 74 234 HOH HOH D . L 3 HOH 51 75 235 HOH HOH D . L 3 HOH 52 76 239 HOH HOH D . L 3 HOH 53 77 240 HOH HOH D . L 3 HOH 54 78 243 HOH HOH D . L 3 HOH 55 79 244 HOH HOH D . L 3 HOH 56 80 246 HOH HOH D . L 3 HOH 57 81 248 HOH HOH D . L 3 HOH 58 82 250 HOH HOH D . L 3 HOH 59 83 260 HOH HOH D . L 3 HOH 60 84 266 HOH HOH D . L 3 HOH 61 85 269 HOH HOH D . L 3 HOH 62 86 270 HOH HOH D . L 3 HOH 63 87 273 HOH HOH D . L 3 HOH 64 88 274 HOH HOH D . L 3 HOH 65 89 279 HOH HOH D . L 3 HOH 66 90 280 HOH HOH D . L 3 HOH 67 91 284 HOH HOH D . L 3 HOH 68 92 287 HOH HOH D . L 3 HOH 69 93 292 HOH HOH D . L 3 HOH 70 94 302 HOH HOH D . L 3 HOH 71 95 304 HOH HOH D . L 3 HOH 72 96 306 HOH HOH D . L 3 HOH 73 97 309 HOH HOH D . L 3 HOH 74 98 319 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 1ZCI _cell.length_a 50.437 _cell.length_b 31.762 _cell.length_c 87.287 _cell.angle_alpha 90.00 _cell.angle_beta 104.78 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1ZCI _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZCI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MPD, spermine, KCl, MgCl2, Na Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 spermine ? ? ? 1 3 1 KCl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 'Na Cacodylate' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 KCl ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 'Na Cacodylate' ? ? ? 1 11 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-03-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator crystal _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 1ZCI _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.65 _reflns.number_obs 31016 _reflns.number_all ? _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 21.3 _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.70 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.255 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZCI _refine.ls_number_reflns_obs 31004 _refine.ls_number_reflns_all 32722 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 836571.53 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.74 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 95.2 _refine.ls_R_factor_obs 0.242 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.242 _refine.ls_R_factor_R_free 0.25 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.1 _refine.ls_number_reflns_R_free 2499 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.6 _refine.aniso_B[1][1] -2.30 _refine.aniso_B[2][2] 2.07 _refine.aniso_B[3][3] 0.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.75 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.408879 _refine.solvent_model_param_bsol 40.4503 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZCI _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1960 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 307 _refine_hist.number_atoms_total 2271 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 19.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 11.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.45 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.75 _refine_ls_shell.number_reflns_R_work 4299 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 86.2 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 7.8 _refine_ls_shell.number_reflns_R_free 363 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water.top 'X-RAY DIFFRACTION' 2 dna-rna.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 bru_rep.param bru.top 'X-RAY DIFFRACTION' 5 neamine.param neamine.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1ZCI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZCI _struct.title 'HIV-1 DIS RNA subtype F- monoclinic form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZCI _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, loop-loop complex, metal ions' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ZCI _struct_ref.pdbx_db_accession 1ZCI _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZCI A 1 ? 23 ? 1ZCI 1 ? 23 ? 1 23 2 1 1ZCI B 1 ? 23 ? 1ZCI 1 ? 23 ? 1 23 3 1 1ZCI C 1 ? 23 ? 1ZCI 1 ? 23 ? 1 23 4 1 1ZCI D 1 ? 23 ? 1ZCI 1 ? 23 ? 1 23 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 1 "O3'" ? ? ? 1_555 A 5BU 2 P ? ? A C 1 A 5BU 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A 5BU 2 "O3'" ? ? ? 1_555 A U 3 P ? ? A 5BU 2 A U 3 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale both ? B C 1 "O3'" ? ? ? 1_555 B 5BU 2 P ? ? B C 1 B 5BU 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? B 5BU 2 "O3'" ? ? ? 1_555 B U 3 P ? ? B 5BU 2 B U 3 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? C C 1 "O3'" ? ? ? 1_555 C 5BU 2 P ? ? C C 1 C 5BU 2 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale6 covale both ? C 5BU 2 "O3'" ? ? ? 1_555 C U 3 P ? ? C 5BU 2 C U 3 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale7 covale both ? D C 1 "O3'" ? ? ? 1_555 D 5BU 2 P ? ? D C 1 D 5BU 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale8 covale both ? D 5BU 2 "O3'" ? ? ? 1_555 D U 3 P ? ? D 5BU 2 D U 3 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A U 3 O4 ? ? ? 1_555 E K . K ? ? A U 3 A K 24 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc2 metalc ? ? A G 4 O6 ? ? ? 1_555 E K . K ? ? A G 4 A K 24 1_555 ? ? ? ? ? ? ? 2.697 ? ? metalc3 metalc ? ? E K . K ? ? ? 1_555 I HOH . O ? ? A K 24 A HOH 26 1_555 ? ? ? ? ? ? ? 2.595 ? ? metalc4 metalc ? ? E K . K ? ? ? 1_555 I HOH . O ? ? A K 24 A HOH 36 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc5 metalc ? ? E K . K ? ? ? 1_555 I HOH . O ? ? A K 24 A HOH 51 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc6 metalc ? ? E K . K ? ? ? 1_555 I HOH . O ? ? A K 24 A HOH 59 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc7 metalc ? ? B U 3 O4 ? ? ? 1_555 F K . K ? ? B U 3 B K 24 1_555 ? ? ? ? ? ? ? 2.579 ? ? metalc8 metalc ? ? B G 4 O6 ? ? ? 1_555 F K . K ? ? B G 4 B K 24 1_555 ? ? ? ? ? ? ? 2.653 ? ? metalc9 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? B K 24 B HOH 31 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc10 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? B K 24 B HOH 44 1_555 ? ? ? ? ? ? ? 2.609 ? ? metalc11 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? B K 24 B HOH 55 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc12 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? B K 24 B HOH 73 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc13 metalc ? ? C U 3 O4 ? ? ? 1_555 G K . K ? ? C U 3 C K 24 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc14 metalc ? ? C G 4 O6 ? ? ? 1_555 G K . K ? ? C G 4 C K 24 1_555 ? ? ? ? ? ? ? 2.743 ? ? metalc15 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? C K 24 C HOH 28 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc16 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? C K 24 C HOH 40 1_555 ? ? ? ? ? ? ? 3.117 ? ? metalc17 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? C K 24 C HOH 53 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc18 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? C K 24 C HOH 77 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc19 metalc ? ? D U 3 O4 ? ? ? 1_555 H K . K ? ? D U 3 D K 24 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc20 metalc ? ? D G 4 O6 ? ? ? 1_555 H K . K ? ? D G 4 D K 24 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc21 metalc ? ? H K . K ? ? ? 1_555 L HOH . O ? ? D K 24 D HOH 36 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc22 metalc ? ? H K . K ? ? ? 1_555 L HOH . O ? ? D K 24 D HOH 40 1_555 ? ? ? ? ? ? ? 2.696 ? ? metalc23 metalc ? ? H K . K ? ? ? 1_555 L HOH . O ? ? D K 24 D HOH 47 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc24 metalc ? ? H K . K ? ? ? 1_555 L HOH . O ? ? D K 24 D HOH 50 1_555 ? ? ? ? ? ? ? 2.651 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5BU 2 N3 ? ? ? 1_555 A A 22 N1 ? ? A 5BU 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5BU 2 O4 ? ? ? 1_555 A A 22 N6 ? ? A 5BU 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 21 N1 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 21 N6 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B 5BU 2 N3 ? ? ? 1_555 B A 22 N1 ? ? B 5BU 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B 5BU 2 O4 ? ? ? 1_555 B A 22 N6 ? ? B 5BU 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 1 N3 ? ? ? 1_555 C G 23 N1 ? ? C C 1 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 1 N4 ? ? ? 1_555 C G 23 O6 ? ? C C 1 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 1 O2 ? ? ? 1_555 C G 23 N2 ? ? C C 1 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C 5BU 2 N3 ? ? ? 1_555 C A 22 N1 ? ? C 5BU 2 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C 5BU 2 O4 ? ? ? 1_555 C A 22 N6 ? ? C 5BU 2 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C U 3 N3 ? ? ? 1_555 C A 21 N1 ? ? C U 3 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C U 3 O4 ? ? ? 1_555 C A 21 N6 ? ? C U 3 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 20 N3 ? ? C G 4 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 20 O2 ? ? C G 4 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 20 N4 ? ? C G 4 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C C 5 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 5 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C C 5 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 5 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 5 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 5 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C U 6 N3 ? ? ? 1_555 C A 18 N1 ? ? C U 6 C A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 18 N6 ? ? C U 6 C A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C G 7 N1 ? ? ? 1_555 C C 17 N3 ? ? C G 7 C C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 7 N2 ? ? ? 1_555 C C 17 O2 ? ? C G 7 C C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C G 7 O6 ? ? ? 1_555 C C 17 N4 ? ? C G 7 C C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 10 D C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 10 D C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 10 D C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C U 11 N3 ? ? ? 1_555 D A 14 N1 ? ? C U 11 D A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C U 11 O4 ? ? ? 1_555 D A 14 N6 ? ? C U 11 D A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 12 N1 ? ? ? 1_555 D C 13 N3 ? ? C G 12 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C G 12 N2 ? ? ? 1_555 D C 13 O2 ? ? C G 12 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 12 O6 ? ? ? 1_555 D C 13 N4 ? ? C G 12 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C C 13 N3 ? ? ? 1_555 D G 12 N1 ? ? C C 13 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C C 13 N4 ? ? ? 1_555 D G 12 O6 ? ? C C 13 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 12 N2 ? ? C C 13 D G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C A 14 N1 ? ? ? 1_555 D U 11 N3 ? ? C A 14 D U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C A 14 N6 ? ? ? 1_555 D U 11 O4 ? ? C A 14 D U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 15 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 15 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 15 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? D C 1 N3 ? ? ? 1_555 D G 23 N1 ? ? D C 1 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? D C 1 N4 ? ? ? 1_555 D G 23 O6 ? ? D C 1 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? D C 1 O2 ? ? ? 1_555 D G 23 N2 ? ? D C 1 D G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? D 5BU 2 N3 ? ? ? 1_555 D A 22 N1 ? ? D 5BU 2 D A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? D 5BU 2 O4 ? ? ? 1_555 D A 22 N6 ? ? D 5BU 2 D A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? D U 3 N3 ? ? ? 1_555 D A 21 N1 ? ? D U 3 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? D U 3 O4 ? ? ? 1_555 D A 21 N6 ? ? D U 3 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? D G 4 N1 ? ? ? 1_555 D C 20 N3 ? ? D G 4 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? D G 4 N2 ? ? ? 1_555 D C 20 O2 ? ? D G 4 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? D G 4 O6 ? ? ? 1_555 D C 20 N4 ? ? D G 4 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? D C 5 N3 ? ? ? 1_555 D G 19 N1 ? ? D C 5 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? D C 5 N4 ? ? ? 1_555 D G 19 O6 ? ? D C 5 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? D C 5 O2 ? ? ? 1_555 D G 19 N2 ? ? D C 5 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? D U 6 N3 ? ? ? 1_555 D A 18 N1 ? ? D U 6 D A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? D U 6 O4 ? ? ? 1_555 D A 18 N6 ? ? D U 6 D A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? D G 7 N1 ? ? ? 1_555 D C 17 N3 ? ? D G 7 D C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? D G 7 N2 ? ? ? 1_555 D C 17 O2 ? ? D G 7 D C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? D G 7 O6 ? ? ? 1_555 D C 17 N4 ? ? D G 7 D C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 3 ? A U 3 ? 1_555 K ? E K . ? A K 24 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 76.3 ? 2 O4 ? A U 3 ? A U 3 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 26 ? 1_555 151.1 ? 3 O6 ? A G 4 ? A G 4 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 26 ? 1_555 84.2 ? 4 O4 ? A U 3 ? A U 3 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 36 ? 1_555 85.2 ? 5 O6 ? A G 4 ? A G 4 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 36 ? 1_555 80.2 ? 6 O ? I HOH . ? A HOH 26 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 36 ? 1_555 112.5 ? 7 O4 ? A U 3 ? A U 3 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 51 ? 1_555 114.4 ? 8 O6 ? A G 4 ? A G 4 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 51 ? 1_555 155.4 ? 9 O ? I HOH . ? A HOH 26 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 51 ? 1_555 92.0 ? 10 O ? I HOH . ? A HOH 36 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 51 ? 1_555 78.8 ? 11 O4 ? A U 3 ? A U 3 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 59 ? 1_555 78.2 ? 12 O6 ? A G 4 ? A G 4 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 59 ? 1_555 96.4 ? 13 O ? I HOH . ? A HOH 26 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 59 ? 1_555 83.1 ? 14 O ? I HOH . ? A HOH 36 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 59 ? 1_555 163.4 ? 15 O ? I HOH . ? A HOH 51 ? 1_555 K ? E K . ? A K 24 ? 1_555 O ? I HOH . ? A HOH 59 ? 1_555 107.3 ? 16 O4 ? B U 3 ? B U 3 ? 1_555 K ? F K . ? B K 24 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 78.2 ? 17 O4 ? B U 3 ? B U 3 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 31 ? 1_555 70.5 ? 18 O6 ? B G 4 ? B G 4 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 31 ? 1_555 100.8 ? 19 O4 ? B U 3 ? B U 3 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 44 ? 1_555 151.9 ? 20 O6 ? B G 4 ? B G 4 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 44 ? 1_555 86.1 ? 21 O ? J HOH . ? B HOH 31 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 44 ? 1_555 90.0 ? 22 O4 ? B U 3 ? B U 3 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 55 ? 1_555 83.6 ? 23 O6 ? B G 4 ? B G 4 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 55 ? 1_555 81.0 ? 24 O ? J HOH . ? B HOH 31 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 55 ? 1_555 152.9 ? 25 O ? J HOH . ? B HOH 44 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 55 ? 1_555 117.1 ? 26 O4 ? B U 3 ? B U 3 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 73 ? 1_555 108.6 ? 27 O6 ? B G 4 ? B G 4 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 73 ? 1_555 152.7 ? 28 O ? J HOH . ? B HOH 31 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 73 ? 1_555 106.4 ? 29 O ? J HOH . ? B HOH 44 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 73 ? 1_555 96.1 ? 30 O ? J HOH . ? B HOH 55 ? 1_555 K ? F K . ? B K 24 ? 1_555 O ? J HOH . ? B HOH 73 ? 1_555 73.8 ? 31 O4 ? C U 3 ? C U 3 ? 1_555 K ? G K . ? C K 24 ? 1_555 O6 ? C G 4 ? C G 4 ? 1_555 75.0 ? 32 O4 ? C U 3 ? C U 3 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 28 ? 1_555 148.5 ? 33 O6 ? C G 4 ? C G 4 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 28 ? 1_555 79.9 ? 34 O4 ? C U 3 ? C U 3 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 40 ? 1_555 72.7 ? 35 O6 ? C G 4 ? C G 4 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 40 ? 1_555 102.9 ? 36 O ? K HOH . ? C HOH 28 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 40 ? 1_555 95.0 ? 37 O4 ? C U 3 ? C U 3 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 53 ? 1_555 82.9 ? 38 O6 ? C G 4 ? C G 4 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 53 ? 1_555 77.7 ? 39 O ? K HOH . ? C HOH 28 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 53 ? 1_555 110.2 ? 40 O ? K HOH . ? C HOH 40 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 53 ? 1_555 154.3 ? 41 O4 ? C U 3 ? C U 3 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 77 ? 1_555 112.7 ? 42 O6 ? C G 4 ? C G 4 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 77 ? 1_555 153.9 ? 43 O ? K HOH . ? C HOH 28 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 77 ? 1_555 98.2 ? 44 O ? K HOH . ? C HOH 40 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 77 ? 1_555 103.3 ? 45 O ? K HOH . ? C HOH 53 ? 1_555 K ? G K . ? C K 24 ? 1_555 O ? K HOH . ? C HOH 77 ? 1_555 78.6 ? 46 O4 ? D U 3 ? D U 3 ? 1_555 K ? H K . ? D K 24 ? 1_555 O6 ? D G 4 ? D G 4 ? 1_555 77.0 ? 47 O4 ? D U 3 ? D U 3 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 36 ? 1_555 106.1 ? 48 O6 ? D G 4 ? D G 4 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 36 ? 1_555 155.3 ? 49 O4 ? D U 3 ? D U 3 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 40 ? 1_555 150.0 ? 50 O6 ? D G 4 ? D G 4 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 40 ? 1_555 86.3 ? 51 O ? L HOH . ? D HOH 36 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 40 ? 1_555 99.5 ? 52 O4 ? D U 3 ? D U 3 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 47 ? 1_555 84.7 ? 53 O6 ? D G 4 ? D G 4 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 47 ? 1_555 85.8 ? 54 O ? L HOH . ? D HOH 36 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 47 ? 1_555 70.3 ? 55 O ? L HOH . ? D HOH 40 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 47 ? 1_555 119.1 ? 56 O4 ? D U 3 ? D U 3 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 50 ? 1_555 81.6 ? 57 O6 ? D G 4 ? D G 4 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 50 ? 1_555 94.8 ? 58 O ? L HOH . ? D HOH 36 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 50 ? 1_555 109.9 ? 59 O ? L HOH . ? D HOH 40 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 50 ? 1_555 75.1 ? 60 O ? L HOH . ? D HOH 47 ? 1_555 K ? H K . ? D K 24 ? 1_555 O ? L HOH . ? D HOH 50 ? 1_555 165.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 24 ? 6 'BINDING SITE FOR RESIDUE K A 24' AC2 Software D K 24 ? 6 'BINDING SITE FOR RESIDUE K D 24' AC3 Software B K 24 ? 6 'BINDING SITE FOR RESIDUE K B 24' AC4 Software C K 24 ? 5 'BINDING SITE FOR RESIDUE K C 24' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 U A 3 ? U A 3 . ? 1_555 ? 2 AC1 6 G A 4 ? G A 4 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 26 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 36 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 51 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 59 . ? 1_555 ? 7 AC2 6 U D 3 ? U D 3 . ? 1_555 ? 8 AC2 6 G D 4 ? G D 4 . ? 1_555 ? 9 AC2 6 HOH L . ? HOH D 36 . ? 1_555 ? 10 AC2 6 HOH L . ? HOH D 40 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH D 47 . ? 1_555 ? 12 AC2 6 HOH L . ? HOH D 50 . ? 1_555 ? 13 AC3 6 U B 3 ? U B 3 . ? 1_555 ? 14 AC3 6 G B 4 ? G B 4 . ? 1_555 ? 15 AC3 6 HOH J . ? HOH B 31 . ? 1_555 ? 16 AC3 6 HOH J . ? HOH B 44 . ? 1_555 ? 17 AC3 6 HOH J . ? HOH B 55 . ? 1_555 ? 18 AC3 6 HOH J . ? HOH B 73 . ? 1_555 ? 19 AC4 5 U C 3 ? U C 3 . ? 1_555 ? 20 AC4 5 G C 4 ? G C 4 . ? 1_555 ? 21 AC4 5 HOH K . ? HOH C 28 . ? 1_555 ? 22 AC4 5 HOH K . ? HOH C 53 . ? 1_555 ? 23 AC4 5 HOH K . ? HOH C 77 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.90 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.80 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 10 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 2 A 5BU 2 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 2 B 5BU 2 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 3 C 5BU 2 C 5BU 2 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 4 D 5BU 2 D 5BU 2 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 K K K N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZCI 'double helix' 1ZCI 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 23 1_555 0.139 -0.091 0.120 8.243 -18.557 -1.996 1 A_C1:G23_A A 1 ? A 23 ? 19 1 1 A 5BU 2 1_555 A A 22 1_555 -0.102 -0.149 0.176 2.411 -20.231 -0.952 2 A_5BU2:A22_A A 2 ? A 22 ? 20 1 1 A U 3 1_555 A A 21 1_555 -0.026 -0.090 0.005 1.292 -13.708 0.035 3 A_U3:A21_A A 3 ? A 21 ? 20 1 1 A G 4 1_555 A C 20 1_555 -0.249 -0.165 0.105 -1.613 -16.649 2.057 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A C 5 1_555 A G 19 1_555 0.131 -0.159 0.188 -0.506 -14.702 -1.406 5 A_C5:G19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 -0.099 -0.119 0.223 -2.505 -12.174 1.971 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 -0.054 -0.154 0.172 -2.059 -13.924 0.971 7 A_G7:C17_A A 7 ? A 17 ? 19 1 1 B G 10 1_555 A C 15 1_555 -0.338 -0.121 -0.014 -13.241 -11.572 2.166 8 B_G10:C15_A B 10 ? A 15 ? 19 1 1 B U 11 1_555 A A 14 1_555 -0.223 -0.140 0.318 -7.008 -8.398 1.335 9 B_U11:A14_A B 11 ? A 14 ? 20 1 1 B G 12 1_555 A C 13 1_555 -0.166 -0.148 0.155 -0.077 -9.609 1.529 10 B_G12:C13_A B 12 ? A 13 ? 19 1 1 B C 13 1_555 A G 12 1_555 0.023 -0.077 0.155 3.599 -10.072 2.497 11 B_C13:G12_A B 13 ? A 12 ? 19 1 1 B A 14 1_555 A U 11 1_555 0.153 -0.086 0.290 6.628 -11.183 2.041 12 B_A14:U11_A B 14 ? A 11 ? 20 1 1 B C 15 1_555 A G 10 1_555 0.310 -0.185 0.105 8.908 -12.140 2.000 13 B_C15:G10_A B 15 ? A 10 ? 19 1 1 B C 17 1_555 B G 7 1_555 0.117 -0.171 0.106 -0.086 -13.290 0.801 14 B_C17:G7_B B 17 ? B 7 ? 19 1 1 B A 18 1_555 B U 6 1_555 -0.007 -0.077 0.262 2.574 -12.765 2.664 15 B_A18:U6_B B 18 ? B 6 ? 20 1 1 B G 19 1_555 B C 5 1_555 -0.178 -0.085 0.000 1.321 -14.472 -0.269 16 B_G19:C5_B B 19 ? B 5 ? 19 1 1 B C 20 1_555 B G 4 1_555 0.240 -0.112 0.086 4.940 -16.295 1.865 17 B_C20:G4_B B 20 ? B 4 ? 19 1 1 B A 21 1_555 B U 3 1_555 -0.095 -0.068 0.028 -2.232 -13.994 -1.495 18 B_A21:U3_B B 21 ? B 3 ? 20 1 1 B A 22 1_555 B 5BU 2 1_555 0.192 -0.094 0.160 -1.582 -19.524 -0.239 19 B_A22:5BU2_B B 22 ? B 2 ? 20 1 1 B G 23 1_555 B C 1 1_555 -0.103 -0.120 0.167 -7.585 -19.836 -1.503 20 B_G23:C1_B B 23 ? B 1 ? 19 1 1 C C 1 1_555 C G 23 1_555 0.157 -0.080 0.102 9.512 -20.596 -1.684 21 C_C1:G23_C C 1 ? C 23 ? 19 1 1 C 5BU 2 1_555 C A 22 1_555 -0.164 -0.145 0.095 1.994 -20.102 -0.268 22 C_5BU2:A22_C C 2 ? C 22 ? 20 1 1 C U 3 1_555 C A 21 1_555 0.020 -0.138 -0.001 1.577 -14.551 -0.285 23 C_U3:A21_C C 3 ? C 21 ? 20 1 1 C G 4 1_555 C C 20 1_555 -0.262 -0.164 0.205 -1.524 -16.577 1.630 24 C_G4:C20_C C 4 ? C 20 ? 19 1 1 C C 5 1_555 C G 19 1_555 0.098 -0.137 0.163 -0.804 -15.092 -1.112 25 C_C5:G19_C C 5 ? C 19 ? 19 1 1 C U 6 1_555 C A 18 1_555 -0.066 -0.115 0.299 -3.726 -12.766 3.379 26 C_U6:A18_C C 6 ? C 18 ? 20 1 1 C G 7 1_555 C C 17 1_555 -0.073 -0.148 0.139 -1.189 -13.831 1.350 27 C_G7:C17_C C 7 ? C 17 ? 19 1 1 D G 10 1_555 C C 15 1_555 -0.235 -0.090 -0.010 -11.549 -14.483 2.261 28 D_G10:C15_C D 10 ? C 15 ? 19 1 1 D U 11 1_555 C A 14 1_555 -0.185 -0.183 0.332 -6.189 -9.273 -0.519 29 D_U11:A14_C D 11 ? C 14 ? 20 1 1 D G 12 1_555 C C 13 1_555 -0.195 -0.150 0.145 -0.860 -10.276 2.586 30 D_G12:C13_C D 12 ? C 13 ? 19 1 1 D C 13 1_555 C G 12 1_555 -0.026 -0.050 0.090 1.781 -9.167 2.791 31 D_C13:G12_C D 13 ? C 12 ? 19 1 1 D A 14 1_555 C U 11 1_555 0.157 -0.096 0.158 3.691 -10.483 1.632 32 D_A14:U11_C D 14 ? C 11 ? 20 1 1 D C 15 1_555 C G 10 1_555 0.425 -0.204 -0.053 12.151 -13.915 1.277 33 D_C15:G10_C D 15 ? C 10 ? 19 1 1 D C 17 1_555 D G 7 1_555 0.202 -0.166 0.080 -2.705 -12.389 0.404 34 D_C17:G7_D D 17 ? D 7 ? 19 1 1 D A 18 1_555 D U 6 1_555 0.003 -0.040 0.209 0.973 -11.591 3.213 35 D_A18:U6_D D 18 ? D 6 ? 20 1 1 D G 19 1_555 D C 5 1_555 -0.099 -0.127 0.024 0.906 -13.957 -1.850 36 D_G19:C5_D D 19 ? D 5 ? 19 1 1 D C 20 1_555 D G 4 1_555 0.221 -0.176 0.099 3.092 -14.658 1.751 37 D_C20:G4_D D 20 ? D 4 ? 19 1 1 D A 21 1_555 D U 3 1_555 -0.149 -0.090 -0.009 -1.820 -13.627 -1.761 38 D_A21:U3_D D 21 ? D 3 ? 20 1 1 D A 22 1_555 D 5BU 2 1_555 0.152 -0.106 0.109 -3.448 -20.150 -1.396 39 D_A22:5BU2_D D 22 ? D 2 ? 20 1 1 D G 23 1_555 D C 1 1_555 -0.186 -0.104 0.218 -6.740 -16.601 -1.545 40 D_G23:C1_D D 23 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 23 1_555 A 5BU 2 1_555 A A 22 1_555 -0.338 -1.621 3.312 -3.054 6.720 34.978 -3.587 0.121 2.978 11.029 5.013 35.725 1 AA_C15BU2:A22G23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A 5BU 2 1_555 A A 22 1_555 A U 3 1_555 A A 21 1_555 -0.058 -1.076 3.196 -1.028 6.938 34.090 -2.802 -0.051 2.928 11.682 1.731 34.783 2 AA_5BU2U3:A21A22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A U 3 1_555 A A 21 1_555 A G 4 1_555 A C 20 1_555 0.184 -1.493 3.084 -1.334 15.155 31.258 -4.468 -0.481 2.144 26.266 2.312 34.680 3 AA_U3G4:C20A21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A C 5 1_555 A G 19 1_555 -0.484 -1.346 3.159 -1.921 5.698 33.633 -3.137 0.540 2.921 9.751 3.288 34.151 4 AA_G4C5:G19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.697 -1.429 3.232 2.817 7.404 31.557 -3.782 -0.777 2.881 13.352 -5.081 32.511 5 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 0.233 -1.512 3.111 1.537 11.898 29.997 -4.561 -0.183 2.364 21.917 -2.831 32.256 6 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A G 7 1_555 A C 17 1_555 B G 10 1_555 A C 15 1_555 -1.690 -2.620 6.338 -6.379 13.525 77.237 -2.785 1.000 5.991 10.741 5.066 78.449 7 AB_G7G10:C15C17_AA A 7 ? A 17 ? B 10 ? A 15 ? 1 B G 10 1_555 A C 15 1_555 B U 11 1_555 A A 14 1_555 -0.558 -1.406 3.105 -3.159 0.944 32.681 -2.641 0.473 3.103 1.673 5.596 32.843 8 BB_G10U11:A14C15_AA B 10 ? A 15 ? B 11 ? A 14 ? 1 B U 11 1_555 A A 14 1_555 B G 12 1_555 A C 13 1_555 0.443 -1.547 2.877 1.910 8.495 30.341 -4.145 -0.522 2.390 15.825 -3.558 31.537 9 BB_U11G12:C13A14_AA B 11 ? A 14 ? B 12 ? A 13 ? 1 B G 12 1_555 A C 13 1_555 B C 13 1_555 A G 12 1_555 0.323 -1.494 3.180 1.734 2.952 32.789 -3.113 -0.288 3.050 5.212 -3.062 32.962 10 BB_G12C13:G12C13_AA B 12 ? A 13 ? B 13 ? A 12 ? 1 B C 13 1_555 A G 12 1_555 B A 14 1_555 A U 11 1_555 -0.500 -1.653 3.001 -2.377 9.230 29.753 -4.563 0.545 2.423 17.420 4.487 31.210 11 BB_C13A14:U11G12_AA B 13 ? A 12 ? B 14 ? A 11 ? 1 B A 14 1_555 A U 11 1_555 B C 15 1_555 A G 10 1_555 0.306 -1.572 3.115 0.514 3.119 33.760 -3.163 -0.447 2.966 5.356 -0.882 33.904 12 BB_A14C15:G10U11_AA B 14 ? A 11 ? B 15 ? A 10 ? 1 B C 15 1_555 A G 10 1_555 B C 17 1_555 B G 7 1_555 1.816 -2.838 6.319 8.154 9.787 77.793 -2.755 -1.003 6.121 7.745 -6.452 78.665 13 BB_C15C17:G7G10_BA B 15 ? A 10 ? B 17 ? B 7 ? 1 B C 17 1_555 B G 7 1_555 B A 18 1_555 B U 6 1_555 -0.262 -1.535 3.062 -1.690 10.281 29.089 -4.606 0.209 2.404 19.690 3.237 30.861 14 BB_C17A18:U6G7_BB B 17 ? B 7 ? B 18 ? B 6 ? 1 B A 18 1_555 B U 6 1_555 B G 19 1_555 B C 5 1_555 -0.628 -1.503 3.236 -0.853 8.350 30.428 -4.215 1.008 2.753 15.541 1.587 31.538 15 BB_A18G19:C5U6_BB B 18 ? B 6 ? B 19 ? B 5 ? 1 B G 19 1_555 B C 5 1_555 B C 20 1_555 B G 4 1_555 0.509 -1.375 3.060 0.216 6.616 34.019 -3.223 -0.825 2.756 11.177 -0.366 34.638 16 BB_G19C20:G4C5_BB B 19 ? B 5 ? B 20 ? B 4 ? 1 B C 20 1_555 B G 4 1_555 B A 21 1_555 B U 3 1_555 -0.195 -1.476 3.245 1.091 15.072 31.533 -4.510 0.474 2.315 25.952 -1.878 34.883 17 BB_C20A21:U3G4_BB B 20 ? B 4 ? B 21 ? B 3 ? 1 B A 21 1_555 B U 3 1_555 B A 22 1_555 B 5BU 2 1_555 0.053 -1.048 3.152 0.850 6.295 34.646 -2.610 0.030 2.923 10.462 -1.413 35.206 18 BB_A21A22:5BU2U3_BB B 21 ? B 3 ? B 22 ? B 2 ? 1 B A 22 1_555 B 5BU 2 1_555 B G 23 1_555 B C 1 1_555 0.433 -1.605 3.329 2.382 7.246 33.827 -3.779 -0.371 2.956 12.260 -4.031 34.652 19 BB_A22G23:C15BU2_BB B 22 ? B 2 ? B 23 ? B 1 ? 1 C C 1 1_555 C G 23 1_555 C 5BU 2 1_555 C A 22 1_555 -0.317 -1.605 3.341 -2.653 7.742 34.634 -3.727 0.142 2.941 12.785 4.381 35.559 20 CC_C15BU2:A22G23_CC C 1 ? C 23 ? C 2 ? C 22 ? 1 C 5BU 2 1_555 C A 22 1_555 C U 3 1_555 C A 21 1_555 -0.152 -0.994 3.219 -1.527 7.711 34.133 -2.760 0.034 2.936 12.924 2.559 35.001 21 CC_5BU2U3:A21A22_CC C 2 ? C 22 ? C 3 ? C 21 ? 1 C U 3 1_555 C A 21 1_555 C G 4 1_555 C C 20 1_555 0.308 -1.517 3.099 -2.197 14.569 30.273 -4.641 -0.837 2.138 26.047 3.927 33.592 22 CC_U3G4:C20A21_CC C 3 ? C 21 ? C 4 ? C 20 ? 1 C G 4 1_555 C C 20 1_555 C C 5 1_555 C G 19 1_555 -0.556 -1.397 3.142 -1.287 5.316 34.460 -3.082 0.746 2.919 8.903 2.155 34.878 23 CC_G4C5:G19C20_CC C 4 ? C 20 ? C 5 ? C 19 ? 1 C C 5 1_555 C G 19 1_555 C U 6 1_555 C A 18 1_555 0.678 -1.427 3.272 1.988 7.143 31.567 -3.765 -0.878 2.924 12.908 -3.592 32.405 24 CC_C5U6:A18G19_CC C 5 ? C 19 ? C 6 ? C 18 ? 1 C U 6 1_555 C A 18 1_555 C G 7 1_555 C C 17 1_555 0.182 -1.470 3.051 2.085 10.839 29.457 -4.460 0.000 2.382 20.433 -3.931 31.414 25 CC_U6G7:C17A18_CC C 6 ? C 18 ? C 7 ? C 17 ? 1 C G 7 1_555 C C 17 1_555 D G 10 1_555 C C 15 1_555 -1.578 -2.432 6.509 -4.382 12.373 77.196 -2.606 1.012 6.193 9.849 3.489 78.132 26 CD_G7G10:C15C17_CC C 7 ? C 17 ? D 10 ? C 15 ? 1 D G 10 1_555 C C 15 1_555 D U 11 1_555 C A 14 1_555 -0.600 -1.413 3.056 -3.730 2.803 33.286 -2.870 0.473 2.978 4.864 6.473 33.602 27 DD_G10U11:A14C15_CC D 10 ? C 15 ? D 11 ? C 14 ? 1 D U 11 1_555 C A 14 1_555 D G 12 1_555 C C 13 1_555 0.560 -1.573 2.906 3.338 9.758 30.515 -4.280 -0.517 2.351 17.909 -6.126 32.171 28 DD_U11G12:C13A14_CC D 11 ? C 14 ? D 12 ? C 13 ? 1 D G 12 1_555 C C 13 1_555 D C 13 1_555 C G 12 1_555 0.231 -1.421 3.174 0.711 3.123 32.266 -3.068 -0.295 3.031 5.602 -1.275 32.420 29 DD_G12C13:G12C13_CC D 12 ? C 13 ? D 13 ? C 12 ? 1 D C 13 1_555 C G 12 1_555 D A 14 1_555 C U 11 1_555 -0.555 -1.646 3.124 -1.724 8.598 29.469 -4.610 0.745 2.580 16.449 3.299 30.719 30 DD_C13A14:U11G12_CC D 13 ? C 12 ? D 14 ? C 11 ? 1 D A 14 1_555 C U 11 1_555 D C 15 1_555 C G 10 1_555 0.343 -1.380 2.973 1.562 3.052 34.646 -2.721 -0.360 2.857 5.110 -2.615 34.810 31 DD_A14C15:G10U11_CC D 14 ? C 11 ? D 15 ? C 10 ? 1 D C 15 1_555 C G 10 1_555 D C 17 1_555 D G 7 1_555 1.860 -2.729 6.416 8.034 13.066 78.486 -2.804 -1.035 6.114 10.237 -6.294 79.733 32 DD_C15C17:G7G10_DC D 15 ? C 10 ? D 17 ? D 7 ? 1 D C 17 1_555 D G 7 1_555 D A 18 1_555 D U 6 1_555 -0.251 -1.551 3.052 -2.556 10.333 27.978 -4.840 0.034 2.356 20.459 5.061 29.897 33 DD_C17A18:U6G7_DD D 17 ? D 7 ? D 18 ? D 6 ? 1 D A 18 1_555 D U 6 1_555 D G 19 1_555 D C 5 1_555 -0.701 -1.547 3.198 -1.185 7.853 30.795 -4.156 1.079 2.754 14.487 2.186 31.779 34 DD_A18G19:C5U6_DD D 18 ? D 6 ? D 19 ? D 5 ? 1 D G 19 1_555 D C 5 1_555 D C 20 1_555 D G 4 1_555 0.497 -1.418 3.103 0.614 7.253 33.320 -3.464 -0.760 2.751 12.465 -1.055 34.084 35 DD_G19C20:G4C5_DD D 19 ? D 5 ? D 20 ? D 4 ? 1 D C 20 1_555 D G 4 1_555 D A 21 1_555 D U 3 1_555 -0.108 -1.548 3.204 1.356 14.036 30.803 -4.665 0.379 2.296 24.857 -2.402 33.806 36 DD_C20A21:U3G4_DD D 20 ? D 4 ? D 21 ? D 3 ? 1 D A 21 1_555 D U 3 1_555 D A 22 1_555 D 5BU 2 1_555 0.018 -1.154 3.167 0.762 7.172 34.984 -2.853 0.074 2.882 11.776 -1.251 35.697 37 DD_A21A22:5BU2U3_DD D 21 ? D 3 ? D 22 ? D 2 ? 1 D A 22 1_555 D 5BU 2 1_555 D G 23 1_555 D C 1 1_555 0.581 -1.697 3.226 1.902 5.304 33.553 -3.707 -0.704 2.958 9.107 -3.267 34.009 38 DD_A22G23:C15BU2_DD D 22 ? D 2 ? D 23 ? D 1 ? # _atom_sites.entry_id 1ZCI _atom_sites.fract_transf_matrix[1][1] 0.019827 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005231 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C K N O P # loop_