HEADER TRANSFERASE 13-APR-05 1ZCT TITLE STRUCTURE OF GLYCOGENIN TRUNCATED AT RESIDUE 270 IN A COMPLEX WITH UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGENIN-1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.186; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: GYG, GYG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.D.HURLEY,S.L.STOUT,E.MINER,J.ZHOU,P.J.ROACH REVDAT 5 23-AUG-23 1ZCT 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1ZCT 1 REMARK REVDAT 3 24-FEB-09 1ZCT 1 VERSN REVDAT 2 05-JUL-05 1ZCT 1 JRNL REVDAT 1 26-APR-05 1ZCT 0 JRNL AUTH T.D.HURLEY,S.STOUT,E.MINER,J.ZHOU,P.J.ROACH JRNL TITL REQUIREMENTS FOR CATALYSIS IN MAMMALIAN GLYCOGENIN. JRNL REF J.BIOL.CHEM. V. 280 23892 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15849187 JRNL DOI 10.1074/JBC.M502344200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.J.GIBBONS,P.J.ROACH,T.D.HURLEY REMARK 1 TITL CRYSTAL STRUCTURE OF THE AUTOCATALYTIC INITIATOR OF GLYCOGEN REMARK 1 TITL 2 BIOSYNTHESIS, GLYCOGENIN REMARK 1 REF J.MOL.BIOL. V. 319 463 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 20738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.84700 REMARK 3 B22 (A**2) : -22.84700 REMARK 3 B33 (A**2) : 45.69400 REMARK 3 B12 (A**2) : -14.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.61 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.270 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.910 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.660 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 31.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : UDP.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : WATER.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : APS 17ID DESIGN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LL3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 4000, URIDINE REMARK 280 -DIPHOSPHOGLUCOSE, MANGANESE CHLORIDE, PH 4.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.79333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 155.58667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.79333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 155.58667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -37.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 64.95191 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 THR A 238 REMARK 465 MET A 239 REMARK 465 THR A 240 REMARK 465 HIS A 241 REMARK 465 GLN A 262 REMARK 465 PHE A 263 REMARK 465 GLY A 264 REMARK 465 LEU A 265 REMARK 465 VAL A 266 REMARK 465 GLN A 267 REMARK 465 ASP A 268 REMARK 465 THR A 269 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 THR B 238 REMARK 465 MET B 239 REMARK 465 THR B 240 REMARK 465 HIS B 241 REMARK 465 GLN B 262 REMARK 465 PHE B 263 REMARK 465 GLY B 264 REMARK 465 LEU B 265 REMARK 465 VAL B 266 REMARK 465 GLN B 267 REMARK 465 ASP B 268 REMARK 465 THR B 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 34.88 -98.16 REMARK 500 SER A 141 130.04 -171.51 REMARK 500 PHE A 170 51.73 -93.73 REMARK 500 ASP A 177 111.50 60.66 REMARK 500 ILE A 185 -6.34 -59.30 REMARK 500 ASN A 187 58.84 -170.11 REMARK 500 ILE A 193 -14.97 -44.35 REMARK 500 THR B 1 20.20 -79.44 REMARK 500 ASP B 103 37.10 -98.71 REMARK 500 SER B 141 129.01 -171.40 REMARK 500 PHE B 170 54.09 -93.48 REMARK 500 ASP B 177 109.73 60.51 REMARK 500 ASN B 187 61.03 -168.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD2 REMARK 620 2 ASP A 103 OD1 88.3 REMARK 620 3 ASP A 103 OD2 138.1 51.8 REMARK 620 4 HIS A 211 NE2 108.0 89.3 86.2 REMARK 620 5 UDP A 411 O1B 115.0 154.1 102.7 93.7 REMARK 620 6 UDP A 411 O1A 82.9 71.2 73.3 157.7 99.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 101 OD2 REMARK 620 2 ASP B 103 OD2 144.2 REMARK 620 3 ASP B 103 OD1 92.1 52.4 REMARK 620 4 HIS B 211 NE2 104.8 83.8 92.2 REMARK 620 5 UDP B 412 O1A 82.6 81.8 72.4 163.4 REMARK 620 6 UDP B 412 O1B 106.8 107.5 158.8 92.0 100.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LL0 RELATED DB: PDB REMARK 900 RELATED ID: 1LL2 RELATED DB: PDB REMARK 900 RELATED ID: 1LL3 RELATED DB: PDB REMARK 900 RELATED ID: 1ZCU RELATED DB: PDB REMARK 900 RELATED ID: 1ZCV RELATED DB: PDB REMARK 900 RELATED ID: 1ZCY RELATED DB: PDB DBREF 1ZCT A 0 269 UNP P13280 GLYG_RABIT 0 269 DBREF 1ZCT B 0 269 UNP P13280 GLYG_RABIT 0 269 SEQADV 1ZCT MET A -20 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY A -19 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER A -18 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER A -17 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -16 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -15 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -14 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -13 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -12 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -11 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER A -10 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER A -9 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY A -8 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT LEU A -7 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT VAL A -6 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT PRO A -5 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT ARG A -4 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY A -3 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER A -2 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS A -1 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT MET B -20 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY B -19 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER B -18 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER B -17 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -16 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -15 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -14 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -13 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -12 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -11 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER B -10 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER B -9 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY B -8 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT LEU B -7 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT VAL B -6 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT PRO B -5 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT ARG B -4 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT GLY B -3 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT SER B -2 UNP P13280 CLONING ARTIFACT SEQADV 1ZCT HIS B -1 UNP P13280 CLONING ARTIFACT SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET THR ASP GLN ALA PHE SEQRES 3 A 290 VAL THR LEU THR THR ASN ASP ALA TYR ALA LYS GLY ALA SEQRES 4 A 290 LEU VAL LEU GLY SER SER LEU LYS GLN HIS ARG THR SER SEQRES 5 A 290 ARG ARG LEU ALA VAL LEU THR THR PRO GLN VAL SER ASP SEQRES 6 A 290 THR MET ARG LYS ALA LEU GLU ILE VAL PHE ASP GLU VAL SEQRES 7 A 290 ILE THR VAL ASP ILE LEU ASP SER GLY ASP SER ALA HIS SEQRES 8 A 290 LEU THR LEU MET LYS ARG PRO GLU LEU GLY VAL THR LEU SEQRES 9 A 290 THR LYS LEU HIS CYS TRP SER LEU THR GLN TYR SER LYS SEQRES 10 A 290 CYS VAL PHE MET ASP ALA ASP THR LEU VAL LEU ALA ASN SEQRES 11 A 290 ILE ASP ASP LEU PHE GLU ARG GLU GLU LEU SER ALA ALA SEQRES 12 A 290 PRO ASP PRO GLY TRP PRO ASP CYS PHE ASN SER GLY VAL SEQRES 13 A 290 PHE VAL TYR GLN PRO SER VAL GLU THR TYR ASN GLN LEU SEQRES 14 A 290 LEU HIS VAL ALA SER GLU GLN GLY SER PHE ASP GLY GLY SEQRES 15 A 290 ASP GLN GLY LEU LEU ASN THR PHE PHE ASN SER TRP ALA SEQRES 16 A 290 THR THR ASP ILE ARG LYS HIS LEU PRO PHE ILE TYR ASN SEQRES 17 A 290 LEU SER SER ILE SER ILE TYR SER TYR LEU PRO ALA PHE SEQRES 18 A 290 LYS ALA PHE GLY ALA ASN ALA LYS VAL VAL HIS PHE LEU SEQRES 19 A 290 GLY GLN THR LYS PRO TRP ASN TYR THR TYR ASP THR LYS SEQRES 20 A 290 THR LYS SER VAL ARG SER GLU GLY HIS ASP PRO THR MET SEQRES 21 A 290 THR HIS PRO GLN PHE LEU ASN VAL TRP TRP ASP ILE PHE SEQRES 22 A 290 THR THR SER VAL VAL PRO LEU LEU GLN GLN PHE GLY LEU SEQRES 23 A 290 VAL GLN ASP THR SEQRES 1 B 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 290 LEU VAL PRO ARG GLY SER HIS MET THR ASP GLN ALA PHE SEQRES 3 B 290 VAL THR LEU THR THR ASN ASP ALA TYR ALA LYS GLY ALA SEQRES 4 B 290 LEU VAL LEU GLY SER SER LEU LYS GLN HIS ARG THR SER SEQRES 5 B 290 ARG ARG LEU ALA VAL LEU THR THR PRO GLN VAL SER ASP SEQRES 6 B 290 THR MET ARG LYS ALA LEU GLU ILE VAL PHE ASP GLU VAL SEQRES 7 B 290 ILE THR VAL ASP ILE LEU ASP SER GLY ASP SER ALA HIS SEQRES 8 B 290 LEU THR LEU MET LYS ARG PRO GLU LEU GLY VAL THR LEU SEQRES 9 B 290 THR LYS LEU HIS CYS TRP SER LEU THR GLN TYR SER LYS SEQRES 10 B 290 CYS VAL PHE MET ASP ALA ASP THR LEU VAL LEU ALA ASN SEQRES 11 B 290 ILE ASP ASP LEU PHE GLU ARG GLU GLU LEU SER ALA ALA SEQRES 12 B 290 PRO ASP PRO GLY TRP PRO ASP CYS PHE ASN SER GLY VAL SEQRES 13 B 290 PHE VAL TYR GLN PRO SER VAL GLU THR TYR ASN GLN LEU SEQRES 14 B 290 LEU HIS VAL ALA SER GLU GLN GLY SER PHE ASP GLY GLY SEQRES 15 B 290 ASP GLN GLY LEU LEU ASN THR PHE PHE ASN SER TRP ALA SEQRES 16 B 290 THR THR ASP ILE ARG LYS HIS LEU PRO PHE ILE TYR ASN SEQRES 17 B 290 LEU SER SER ILE SER ILE TYR SER TYR LEU PRO ALA PHE SEQRES 18 B 290 LYS ALA PHE GLY ALA ASN ALA LYS VAL VAL HIS PHE LEU SEQRES 19 B 290 GLY GLN THR LYS PRO TRP ASN TYR THR TYR ASP THR LYS SEQRES 20 B 290 THR LYS SER VAL ARG SER GLU GLY HIS ASP PRO THR MET SEQRES 21 B 290 THR HIS PRO GLN PHE LEU ASN VAL TRP TRP ASP ILE PHE SEQRES 22 B 290 THR THR SER VAL VAL PRO LEU LEU GLN GLN PHE GLY LEU SEQRES 23 B 290 VAL GLN ASP THR HET MN A 400 1 HET UDP A 411 25 HET MN B 401 1 HET UDP B 412 25 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 MN 2(MN 2+) FORMUL 4 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 HOH *55(H2 O) HELIX 1 1 ASN A 11 HIS A 28 1 18 HELIX 2 2 SER A 43 PHE A 54 1 12 HELIX 3 3 ALA A 69 ARG A 76 1 8 HELIX 4 4 LEU A 79 LEU A 86 1 8 HELIX 5 5 HIS A 87 LEU A 91 5 5 HELIX 6 6 ILE A 110 ARG A 116 5 7 HELIX 7 7 SER A 141 GLY A 156 1 16 HELIX 8 8 GLY A 161 PHE A 170 1 10 HELIX 9 9 ASP A 177 HIS A 181 5 5 HELIX 10 10 PRO A 183 ASN A 187 5 5 HELIX 11 11 ILE A 191 SER A 195 5 5 HELIX 12 12 TYR A 196 GLY A 204 1 9 HELIX 13 13 ALA A 205 ALA A 207 5 3 HELIX 14 14 LYS A 217 TYR A 221 5 5 HELIX 15 15 PRO A 242 SER A 255 1 14 HELIX 16 16 SER A 255 LEU A 260 1 6 HELIX 17 17 ASN B 11 HIS B 28 1 18 HELIX 18 18 SER B 43 PHE B 54 1 12 HELIX 19 19 ALA B 69 ARG B 76 1 8 HELIX 20 20 LEU B 79 LEU B 86 1 8 HELIX 21 21 HIS B 87 LEU B 91 5 5 HELIX 22 22 ILE B 110 ARG B 116 5 7 HELIX 23 23 SER B 141 GLY B 156 1 16 HELIX 24 24 GLY B 161 PHE B 170 1 10 HELIX 25 25 ASP B 177 HIS B 181 5 5 HELIX 26 26 PRO B 183 ASN B 187 5 5 HELIX 27 27 ILE B 191 SER B 195 5 5 HELIX 28 28 TYR B 196 GLY B 204 1 9 HELIX 29 29 ALA B 205 ALA B 207 5 3 HELIX 30 30 LYS B 217 TYR B 221 5 5 HELIX 31 31 PRO B 242 LEU B 260 1 19 SHEET 1 A 6 GLU A 56 THR A 59 0 SHEET 2 A 6 ARG A 33 THR A 38 1 N THR A 38 O ILE A 58 SHEET 3 A 6 GLN A 3 THR A 9 1 N PHE A 5 O ALA A 35 SHEET 4 A 6 LYS A 96 MET A 100 1 O MET A 100 N VAL A 6 SHEET 5 A 6 PHE A 131 TYR A 138 -1 O TYR A 138 N CYS A 97 SHEET 6 A 6 SER A 120 PRO A 123 -1 N ALA A 122 O ASN A 132 SHEET 1 B 3 THR A 104 VAL A 106 0 SHEET 2 B 3 VAL A 209 HIS A 211 -1 O VAL A 210 N LEU A 105 SHEET 3 B 3 LEU A 188 SER A 189 1 N LEU A 188 O VAL A 209 SHEET 1 C 2 TYR A 223 ASP A 224 0 SHEET 2 C 2 SER A 229 VAL A 230 -1 O SER A 229 N ASP A 224 SHEET 1 D 6 GLU B 56 THR B 59 0 SHEET 2 D 6 ARG B 33 THR B 38 1 N THR B 38 O ILE B 58 SHEET 3 D 6 GLN B 3 THR B 9 1 N PHE B 5 O ALA B 35 SHEET 4 D 6 LYS B 96 MET B 100 1 O MET B 100 N VAL B 6 SHEET 5 D 6 PHE B 131 TYR B 138 -1 O TYR B 138 N CYS B 97 SHEET 6 D 6 SER B 120 PRO B 123 -1 N ALA B 122 O ASN B 132 SHEET 1 E 3 THR B 104 VAL B 106 0 SHEET 2 E 3 VAL B 209 HIS B 211 -1 O VAL B 210 N LEU B 105 SHEET 3 E 3 LEU B 188 SER B 189 1 N LEU B 188 O VAL B 209 SHEET 1 F 2 TYR B 223 ASP B 224 0 SHEET 2 F 2 SER B 229 VAL B 230 -1 O SER B 229 N ASP B 224 LINK OD2 ASP A 101 MN MN A 400 1555 1555 2.17 LINK OD1 ASP A 103 MN MN A 400 1555 1555 2.32 LINK OD2 ASP A 103 MN MN A 400 1555 1555 2.65 LINK NE2 HIS A 211 MN MN A 400 1555 1555 2.09 LINK MN MN A 400 O1B UDP A 411 1555 1555 2.17 LINK MN MN A 400 O1A UDP A 411 1555 1555 2.42 LINK OD2 ASP B 101 MN MN B 401 1555 1555 2.29 LINK OD2 ASP B 103 MN MN B 401 1555 1555 2.67 LINK OD1 ASP B 103 MN MN B 401 1555 1555 2.25 LINK NE2 HIS B 211 MN MN B 401 1555 1555 2.05 LINK MN MN B 401 O1A UDP B 412 1555 1555 2.31 LINK MN MN B 401 O1B UDP B 412 1555 1555 2.28 CISPEP 1 GLU A 118 LEU A 119 0 0.19 CISPEP 2 GLU B 118 LEU B 119 0 0.18 SITE 1 AC1 4 ASP A 101 ASP A 103 HIS A 211 UDP A 411 SITE 1 AC2 4 ASP B 101 ASP B 103 HIS B 211 UDP B 412 SITE 1 AC3 13 LEU A 8 THR A 9 THR A 10 TYR A 14 SITE 2 AC3 13 VAL A 81 ASP A 101 ALA A 102 ASP A 103 SITE 3 AC3 13 HIS A 211 LEU A 213 GLY A 214 LYS A 217 SITE 4 AC3 13 MN A 400 SITE 1 AC4 15 LEU B 8 THR B 9 THR B 10 ASN B 11 SITE 2 AC4 15 TYR B 14 VAL B 81 ASP B 101 ALA B 102 SITE 3 AC4 15 ASP B 103 HIS B 211 LEU B 213 GLY B 214 SITE 4 AC4 15 LYS B 217 MN B 401 HOH B 428 CRYST1 75.000 75.000 233.380 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013333 0.007698 0.000000 0.00000 SCALE2 0.000000 0.015396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004285 0.00000