HEADER IGG BINDING DOMAIN 09-JUL-97 1ZDA TITLE PHAGE-SELECTED MINI PROTEIN A DOMAIN, Z38, NMR, 24 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINI PROTEIN A DOMAIN, Z38; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MINIMIZED, TWO-HELIX, IGG-BINDING VARIANT OF PROTEIN A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630 KEYWDS IGG BINDING DOMAIN, PROTEIN A MIMIC EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR M.A.STAROVASNIK REVDAT 3 02-MAR-22 1ZDA 1 REMARK REVDAT 2 24-FEB-09 1ZDA 1 VERSN REVDAT 1 17-SEP-97 1ZDA 0 JRNL AUTH M.A.STAROVASNIK,A.C.BRAISTED,J.A.WELLS JRNL TITL STRUCTURAL MIMICRY OF A NATIVE PROTEIN BY A MINIMIZED JRNL TITL 2 BINDING DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 10080 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9294166 JRNL DOI 10.1073/PNAS.94.19.10080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZDA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177459. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 281 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IN H2O: NOESY; TOCSY; COSY; IN REMARK 210 D2O: NOESY; COSY-35; 2Q REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DGII, DISCOVER REMARK 210 METHOD USED : METRIX MATRIX DISTANCE GEOMETRY REMARK 210 FOLLOWED BY RESTRAINED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT VIOLATION REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 71.43 -155.40 REMARK 500 1 PHE A 6 32.44 -75.69 REMARK 500 1 ASN A 7 -51.74 -130.30 REMARK 500 1 GLN A 11 -49.03 -151.08 REMARK 500 1 GLU A 26 -51.22 -171.62 REMARK 500 1 SER A 34 -48.63 -165.98 REMARK 500 2 SER A 5 75.40 -152.10 REMARK 500 2 ASN A 7 -90.96 -0.80 REMARK 500 3 GLN A 4 -79.30 -131.72 REMARK 500 3 SER A 5 65.64 -152.49 REMARK 500 3 ASN A 7 -87.34 -102.71 REMARK 500 3 GLN A 9 -61.15 -173.17 REMARK 500 3 GLN A 11 -58.86 -154.45 REMARK 500 4 HIS A 19 55.08 -96.67 REMARK 500 4 SER A 34 -46.32 -168.86 REMARK 500 5 GLN A 4 -62.15 70.15 REMARK 500 5 GLU A 26 -60.92 -147.17 REMARK 500 6 VAL A 2 70.25 58.52 REMARK 500 6 GLN A 11 -56.91 -163.54 REMARK 500 6 ARG A 12 -77.98 -72.39 REMARK 500 6 GLU A 26 -47.27 -148.20 REMARK 500 7 VAL A 2 49.12 -82.33 REMARK 500 7 ASN A 7 -40.71 -179.19 REMARK 500 7 GLU A 16 -50.33 -175.57 REMARK 500 7 LEU A 23 -126.95 -140.50 REMARK 500 7 ASN A 24 23.58 -155.07 REMARK 500 7 GLU A 25 -54.28 74.17 REMARK 500 8 MET A 8 -60.64 -143.91 REMARK 500 8 ASN A 22 84.61 -162.96 REMARK 500 8 ASP A 37 43.59 -85.67 REMARK 500 9 SER A 5 -98.71 -151.93 REMARK 500 9 GLU A 25 -55.98 71.46 REMARK 500 10 ALA A 3 -67.57 -152.02 REMARK 500 10 MET A 8 -52.75 -149.21 REMARK 500 10 GLU A 25 164.94 69.88 REMARK 500 10 GLU A 26 -64.01 71.80 REMARK 500 11 GLN A 4 57.96 -153.52 REMARK 500 11 GLN A 9 -57.90 177.55 REMARK 500 11 ASP A 20 78.02 -156.51 REMARK 500 11 ASN A 22 -30.90 -154.47 REMARK 500 11 GLU A 26 -52.59 -152.07 REMARK 500 12 ALA A 3 -68.26 -165.33 REMARK 500 12 ASN A 7 66.11 -61.84 REMARK 500 12 MET A 8 -45.88 -179.39 REMARK 500 12 GLU A 16 -55.93 -178.56 REMARK 500 12 ASN A 22 25.91 -157.53 REMARK 500 12 ASP A 37 72.39 -65.48 REMARK 500 13 VAL A 2 -158.27 -85.63 REMARK 500 13 GLN A 4 -65.82 -95.81 REMARK 500 13 SER A 5 -123.27 -100.31 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 PHE A 14 0.11 SIDE CHAIN REMARK 500 13 PHE A 14 0.10 SIDE CHAIN REMARK 500 15 PHE A 14 0.14 SIDE CHAIN REMARK 500 22 PHE A 14 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZDB RELATED DB: PDB DBREF 1ZDA A 1 38 PDB 1ZDA 1ZDA 1 38 SEQRES 1 A 38 ALA VAL ALA GLN SER PHE ASN MET GLN GLN GLN ARG ARG SEQRES 2 A 38 PHE TYR GLU ALA LEU HIS ASP PRO ASN LEU ASN GLU GLU SEQRES 3 A 38 GLN ARG ASN ALA LYS ILE LYS SER ILE ARG ASP ASP HELIX 1 H1 MET A 8 LEU A 18 1 11 HELIX 2 H2 GLU A 25 ASP A 38 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1