data_1ZDJ # _entry.id 1ZDJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZDJ pdb_00001zdj 10.2210/pdb1zdj/pdb RCSB PRV021 ? ? WWPDB D_1000177465 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZDJ _pdbx_database_status.recvd_initial_deposition_date 1997-12-18 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grahn, E.' 1 'Stonehouse, N.' 2 'Valegard, K.' 3 'Vandenworm, S.' 4 'Liljas, L.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements.' RNA 5 131 138 1999 RNARFU UK 1355-8382 2122 ? 9917072 10.1017/S1355838299981645 1 'Crystal Structure of an RNA Bacteriophage Coat Protein-Operator Complex' Nature 371 623 ? 1994 NATUAS UK 0028-0836 0006 ? ? ? 2 'The Refined Structure of Bacteriophage MS2 at 2.8 A Resolution' J.Mol.Biol. 234 620 ? 1993 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grahn, E.' 1 ? primary 'Stonehouse, N.J.' 2 ? primary 'Murray, J.B.' 3 ? primary 'van den Worm, S.' 4 ? primary 'Valegard, K.' 5 ? primary 'Fridborg, K.' 6 ? primary 'Stockley, P.G.' 7 ? primary 'Liljas, L.' 8 ? 1 'Valegard, K.' 9 ? 1 'Murray, J.B.' 10 ? 1 'Stockley, P.G.' 11 ? 1 'Stonehouse, N.J.' 12 ? 1 'Liljas, L.' 13 ? 2 'Golmohammadi, R.' 14 ? 2 'Valegard, K.' 15 ? 2 'Fridborg, K.' 16 ? 2 'Liljas, L.' 17 ? # _cell.entry_id 1ZDJ _cell.length_a 288.000 _cell.length_b 288.000 _cell.length_c 653.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 540 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZDJ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*C)-3') ; 2525.577 2 ? ? ? ? 2 polymer man 'PROTEIN (MS2 PROTEIN CAPSID)' 13738.464 3 ? ? ? ? 3 water nat water 18.015 170 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '8-NT MS2 VARIANT RNA FRAGMENT' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCACC GGAUCACC R,S ? 2 'polypeptide(L)' no no ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; A,B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 A n 1 7 C n 1 8 C n 2 1 ALA n 2 2 SER n 2 3 ASN n 2 4 PHE n 2 5 THR n 2 6 GLN n 2 7 PHE n 2 8 VAL n 2 9 LEU n 2 10 VAL n 2 11 ASP n 2 12 ASN n 2 13 GLY n 2 14 GLY n 2 15 THR n 2 16 GLY n 2 17 ASP n 2 18 VAL n 2 19 THR n 2 20 VAL n 2 21 ALA n 2 22 PRO n 2 23 SER n 2 24 ASN n 2 25 PHE n 2 26 ALA n 2 27 ASN n 2 28 GLY n 2 29 VAL n 2 30 ALA n 2 31 GLU n 2 32 TRP n 2 33 ILE n 2 34 SER n 2 35 SER n 2 36 ASN n 2 37 SER n 2 38 ARG n 2 39 SER n 2 40 GLN n 2 41 ALA n 2 42 TYR n 2 43 LYS n 2 44 VAL n 2 45 THR n 2 46 CYS n 2 47 SER n 2 48 VAL n 2 49 ARG n 2 50 GLN n 2 51 SER n 2 52 SER n 2 53 ALA n 2 54 GLN n 2 55 ASN n 2 56 ARG n 2 57 LYS n 2 58 TYR n 2 59 THR n 2 60 ILE n 2 61 LYS n 2 62 VAL n 2 63 GLU n 2 64 VAL n 2 65 PRO n 2 66 LYS n 2 67 VAL n 2 68 ALA n 2 69 THR n 2 70 GLN n 2 71 THR n 2 72 VAL n 2 73 GLY n 2 74 GLY n 2 75 VAL n 2 76 GLU n 2 77 LEU n 2 78 PRO n 2 79 VAL n 2 80 ALA n 2 81 ALA n 2 82 TRP n 2 83 ARG n 2 84 SER n 2 85 TYR n 2 86 LEU n 2 87 ASN n 2 88 MET n 2 89 GLU n 2 90 LEU n 2 91 THR n 2 92 ILE n 2 93 PRO n 2 94 ILE n 2 95 PHE n 2 96 ALA n 2 97 THR n 2 98 ASN n 2 99 SER n 2 100 ASP n 2 101 CYS n 2 102 GLU n 2 103 LEU n 2 104 ILE n 2 105 VAL n 2 106 LYS n 2 107 ALA n 2 108 MET n 2 109 GLN n 2 110 GLY n 2 111 LEU n 2 112 LEU n 2 113 LYS n 2 114 ASP n 2 115 GLY n 2 116 ASN n 2 117 PRO n 2 118 ILE n 2 119 PRO n 2 120 SER n 2 121 ALA n 2 122 ILE n 2 123 ALA n 2 124 ALA n 2 125 ASN n 2 126 SER n 2 127 GLY n 2 128 ILE n 2 129 TYR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Levivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Enterobacteria phage MS2' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacterio phage MS2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12022 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP COAT_BPMS2 2 ? ? P03612 ? 2 PDB 1ZDJ 1 ? ? 1ZDJ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZDJ A 1 ? 129 ? P03612 1 ? 129 ? 1 129 2 1 1ZDJ B 1 ? 129 ? P03612 1 ? 129 ? 1 129 3 1 1ZDJ C 1 ? 129 ? P03612 1 ? 129 ? 1 129 4 2 1ZDJ R 1 ? 8 ? 1ZDJ 7 ? 14 ? 7 14 5 2 1ZDJ S 1 ? 8 ? 1ZDJ 7 ? 14 ? 7 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZDJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 4 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.40 _exptl_crystal_grow.pdbx_details 'pH 7.40' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 280.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1994-12-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZDJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 168328 _reflns.number_all ? _reflns.percent_possible_obs 74.100 _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.300 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.900 _reflns_shell.d_res_low 2.970 _reflns_shell.percent_possible_all 41.20 _reflns_shell.Rmerge_I_obs 0.28 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.600 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZDJ _refine.ls_number_reflns_obs 150777 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs 95.000 _refine.ls_R_factor_obs 0.182 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 21.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'PARKINSON ET AL. FOR RNA' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2895 _refine_hist.pdbx_number_atoms_nucleic_acid 334 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 3399 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.89 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 28.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.70 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.95 _refine_ls_shell.number_reflns_R_work 3583 _refine_ls_shell.R_factor_R_work 0.3 _refine_ls_shell.percent_reflns_obs 53.00 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARHCSDX.PRO _pdbx_xplor_file.topol_file TOPHCSDX.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000 0.00000 0.00000 2 generate ? 0.30901699 -0.75576191 -0.57734954 0.75576185 0.56366034 -0.33333315 0.57734950 -0.33333315 0.74535665 0.00000 0.00000 0.00000 3 generate ? -0.80901699 -0.46708655 -0.35682164 0.46708651 -0.14235205 -0.87267752 0.35682162 -0.87267752 0.33333506 0.00000 0.00000 0.00000 4 generate ? -0.80901699 0.46708655 0.35682164 -0.46708651 -0.14235205 -0.87267752 -0.35682162 -0.87267752 0.33333506 0.00000 0.00000 0.00000 5 generate ? 0.30901699 0.75576191 0.57734954 -0.75576185 0.56366034 -0.33333315 -0.57734950 -0.33333315 0.74535665 0.00000 0.00000 0.00000 6 generate ? -1.00000000 0.00000000 0.00000000 0.00000000 0.74535467 -0.66666814 0.00000000 -0.66666814 -0.74535467 0.00000 0.00000 0.00000 7 generate ? -0.30901699 0.75576191 0.57734954 0.17841012 0.64234946 -0.74535695 -0.93417250 -0.12732297 -0.33333247 0.00000 0.00000 0.00000 8 generate ? 0.80901699 0.46708655 0.35682164 0.11026351 0.47568353 -0.87267813 -0.57735035 0.74535585 0.33333345 0.00000 0.00000 0.00000 9 generate ? 0.80901699 -0.46708655 -0.35682164 -0.11026351 0.47568353 -0.87267813 0.57735035 0.74535585 0.33333345 0.00000 0.00000 0.00000 10 generate ? -0.30901699 -0.75576191 -0.57734954 -0.17841012 0.64234946 -0.74535695 0.93417250 -0.12732297 -0.33333247 0.00000 0.00000 0.00000 # _struct.entry_id 1ZDJ _struct.title 'STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZDJ _struct_keywords.pdbx_keywords Virus/RNA _struct_keywords.text 'COAT PROTEIN-RNA COMPLEX, COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, Icosahedral virus, Virus-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA C 26 ? GLY C 28 ? ALA A 26 GLY A 28 5 ? 3 HELX_P HELX_P2 2 ASN C 98 ? LEU C 111 ? ASN A 98 LEU A 111 1 ? 14 HELX_P HELX_P3 3 PRO C 117 ? ALA C 124 ? PRO A 117 ALA A 124 1 ? 8 HELX_P HELX_P4 4 ALA D 26 ? GLY D 28 ? ALA B 26 GLY B 28 5 ? 3 HELX_P HELX_P5 5 VAL D 79 ? ALA D 81 ? VAL B 79 ALA B 81 5 ? 3 HELX_P HELX_P6 6 ASN D 98 ? LEU D 111 ? ASN B 98 LEU B 111 1 ? 14 HELX_P HELX_P7 7 PRO D 117 ? ALA D 124 ? PRO B 117 ALA B 124 1 ? 8 HELX_P HELX_P8 8 ALA E 26 ? GLY E 28 ? ALA C 26 GLY C 28 5 ? 3 HELX_P HELX_P9 10 ASN E 98 ? LEU E 111 ? ASN C 98 LEU C 111 1 ? 14 HELX_P HELX_P10 11 PRO E 117 ? ALA E 124 ? PRO C 117 ALA C 124 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 8 N3 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 8 O2 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 8 N4 ? ? R G 7 R C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 7 N3 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 7 O2 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 7 N4 ? ? R G 8 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? S G 7 S C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? S G 7 S C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? S G 7 S C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 7 N3 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 7 O2 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 7 N4 ? ? S G 8 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 75 ? PRO C 93 ? VAL A 75 PRO A 93 A 2 ASN C 55 ? VAL C 72 ? ASN A 55 VAL A 72 A 3 LYS C 43 ? ARG C 49 ? LYS A 43 ARG A 49 A 4 ALA C 30 ? SER C 34 ? ALA A 30 SER A 34 A 5 VAL C 18 ? ASN C 24 ? VAL A 18 ASN A 24 B 1 ARG D 83 ? PRO D 93 ? ARG B 83 PRO B 93 B 2 ASN D 55 ? PRO D 65 ? ASN B 55 PRO B 65 B 3 LYS D 43 ? ARG D 49 ? LYS B 43 ARG B 49 B 4 ALA D 30 ? ILE D 33 ? ALA B 30 ILE B 33 B 5 ALA D 21 ? ASN D 24 ? ALA B 21 ASN B 24 C 1 VAL E 75 ? PRO E 93 ? VAL C 75 PRO C 93 C 2 ASN E 55 ? VAL E 72 ? ASN C 55 VAL C 72 C 3 LYS E 43 ? GLN E 50 ? LYS C 43 GLN C 50 C 4 ALA E 30 ? SER E 34 ? ALA C 30 SER C 34 C 5 VAL E 18 ? ASN E 24 ? VAL C 18 ASN C 24 D 1 PHE C 7 ? VAL C 10 ? PHE A 7 VAL A 10 D 2 VAL C 18 ? VAL C 20 ? VAL A 18 VAL A 20 E 1 PHE D 7 ? VAL D 10 ? PHE B 7 VAL B 10 E 2 VAL D 18 ? VAL D 20 ? VAL B 18 VAL B 20 F 1 PHE E 7 ? VAL E 10 ? PHE C 7 VAL C 10 F 2 VAL E 18 ? VAL E 20 ? VAL C 18 VAL C 20 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 75 ? O VAL A 75 N VAL C 72 ? N VAL A 72 A 2 3 O LYS C 57 ? O LYS A 57 N ARG C 49 ? N ARG A 49 A 3 4 O VAL C 44 ? O VAL A 44 N TRP C 32 ? N TRP A 32 A 4 5 O GLU C 31 ? O GLU A 31 N ASN C 24 ? N ASN A 24 B 1 2 O SER D 84 ? O SER B 84 N VAL D 64 ? N VAL B 64 B 2 3 O LYS D 57 ? O LYS B 57 N ARG D 49 ? N ARG B 49 B 3 4 O VAL D 44 ? O VAL B 44 N TRP D 32 ? N TRP B 32 B 4 5 O GLU D 31 ? O GLU B 31 N ASN D 24 ? N ASN B 24 C 1 2 O VAL E 75 ? O VAL C 75 N VAL E 72 ? N VAL C 72 C 2 3 O LYS E 57 ? O LYS C 57 N ARG E 49 ? N ARG C 49 C 3 4 O VAL E 44 ? O VAL C 44 N TRP E 32 ? N TRP C 32 C 4 5 O GLU E 31 ? O GLU C 31 N ASN E 24 ? N ASN C 24 D 1 2 O PHE C 7 ? O PHE A 7 N VAL C 20 ? N VAL A 20 E 1 2 O PHE D 7 ? O PHE B 7 N VAL D 20 ? N VAL B 20 F 1 2 O PHE E 7 ? O PHE C 7 N VAL E 20 ? N VAL C 20 # _database_PDB_matrix.entry_id 1ZDJ _database_PDB_matrix.origx[1][1] -1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] -0.934172 _database_PDB_matrix.origx[2][3] 0.356823 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.356823 _database_PDB_matrix.origx[3][3] 0.934172 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1ZDJ _atom_sites.fract_transf_matrix[1][1] 0.003472 _atom_sites.fract_transf_matrix[1][2] 0.002005 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001531 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 7 7 G G R . n A 1 2 G 2 8 8 G G R . n A 1 3 A 3 9 9 A A R . n A 1 4 U 4 10 10 U U R . n A 1 5 C 5 11 11 C C R . n A 1 6 A 6 12 12 A A R . n A 1 7 C 7 13 13 C C R . n A 1 8 C 8 14 14 C C R . n B 1 1 G 1 7 7 G G S . n B 1 2 G 2 8 8 G G S . n B 1 3 A 3 9 9 A A S . n B 1 4 U 4 10 10 U U S . n B 1 5 C 5 11 11 C C S . n B 1 6 A 6 12 12 A A S . n B 1 7 C 7 13 13 C C S . n B 1 8 C 8 14 14 C C S . n C 2 1 ALA 1 1 1 ALA ALA A . n C 2 2 SER 2 2 2 SER SER A . n C 2 3 ASN 3 3 3 ASN ASN A . n C 2 4 PHE 4 4 4 PHE PHE A . n C 2 5 THR 5 5 5 THR THR A . n C 2 6 GLN 6 6 6 GLN GLN A . n C 2 7 PHE 7 7 7 PHE PHE A . n C 2 8 VAL 8 8 8 VAL VAL A . n C 2 9 LEU 9 9 9 LEU LEU A . n C 2 10 VAL 10 10 10 VAL VAL A . n C 2 11 ASP 11 11 11 ASP ASP A . n C 2 12 ASN 12 12 12 ASN ASN A . n C 2 13 GLY 13 13 13 GLY GLY A . n C 2 14 GLY 14 14 14 GLY GLY A . n C 2 15 THR 15 15 15 THR THR A . n C 2 16 GLY 16 16 16 GLY GLY A . n C 2 17 ASP 17 17 17 ASP ASP A . n C 2 18 VAL 18 18 18 VAL VAL A . n C 2 19 THR 19 19 19 THR THR A . n C 2 20 VAL 20 20 20 VAL VAL A . n C 2 21 ALA 21 21 21 ALA ALA A . n C 2 22 PRO 22 22 22 PRO PRO A . n C 2 23 SER 23 23 23 SER SER A . n C 2 24 ASN 24 24 24 ASN ASN A . n C 2 25 PHE 25 25 25 PHE PHE A . n C 2 26 ALA 26 26 26 ALA ALA A . n C 2 27 ASN 27 27 27 ASN ASN A . n C 2 28 GLY 28 28 28 GLY GLY A . n C 2 29 VAL 29 29 29 VAL VAL A . n C 2 30 ALA 30 30 30 ALA ALA A . n C 2 31 GLU 31 31 31 GLU GLU A . n C 2 32 TRP 32 32 32 TRP TRP A . n C 2 33 ILE 33 33 33 ILE ILE A . n C 2 34 SER 34 34 34 SER SER A . n C 2 35 SER 35 35 35 SER SER A . n C 2 36 ASN 36 36 36 ASN ASN A . n C 2 37 SER 37 37 37 SER SER A . n C 2 38 ARG 38 38 38 ARG ARG A . n C 2 39 SER 39 39 39 SER SER A . n C 2 40 GLN 40 40 40 GLN GLN A . n C 2 41 ALA 41 41 41 ALA ALA A . n C 2 42 TYR 42 42 42 TYR TYR A . n C 2 43 LYS 43 43 43 LYS LYS A . n C 2 44 VAL 44 44 44 VAL VAL A . n C 2 45 THR 45 45 45 THR THR A . n C 2 46 CYS 46 46 46 CYS CYS A . n C 2 47 SER 47 47 47 SER SER A . n C 2 48 VAL 48 48 48 VAL VAL A . n C 2 49 ARG 49 49 49 ARG ARG A . n C 2 50 GLN 50 50 50 GLN GLN A . n C 2 51 SER 51 51 51 SER SER A . n C 2 52 SER 52 52 52 SER SER A . n C 2 53 ALA 53 53 53 ALA ALA A . n C 2 54 GLN 54 54 54 GLN GLN A . n C 2 55 ASN 55 55 55 ASN ASN A . n C 2 56 ARG 56 56 56 ARG ARG A . n C 2 57 LYS 57 57 57 LYS LYS A . n C 2 58 TYR 58 58 58 TYR TYR A . n C 2 59 THR 59 59 59 THR THR A . n C 2 60 ILE 60 60 60 ILE ILE A . n C 2 61 LYS 61 61 61 LYS LYS A . n C 2 62 VAL 62 62 62 VAL VAL A . n C 2 63 GLU 63 63 63 GLU GLU A . n C 2 64 VAL 64 64 64 VAL VAL A . n C 2 65 PRO 65 65 65 PRO PRO A . n C 2 66 LYS 66 66 66 LYS LYS A . n C 2 67 VAL 67 67 67 VAL VAL A . n C 2 68 ALA 68 68 68 ALA ALA A . n C 2 69 THR 69 69 69 THR THR A . n C 2 70 GLN 70 70 70 GLN GLN A . n C 2 71 THR 71 71 71 THR THR A . n C 2 72 VAL 72 72 72 VAL VAL A . n C 2 73 GLY 73 73 73 GLY GLY A . n C 2 74 GLY 74 74 74 GLY GLY A . n C 2 75 VAL 75 75 75 VAL VAL A . n C 2 76 GLU 76 76 76 GLU GLU A . n C 2 77 LEU 77 77 77 LEU LEU A . n C 2 78 PRO 78 78 78 PRO PRO A . n C 2 79 VAL 79 79 79 VAL VAL A . n C 2 80 ALA 80 80 80 ALA ALA A . n C 2 81 ALA 81 81 81 ALA ALA A . n C 2 82 TRP 82 82 82 TRP TRP A . n C 2 83 ARG 83 83 83 ARG ARG A . n C 2 84 SER 84 84 84 SER SER A . n C 2 85 TYR 85 85 85 TYR TYR A . n C 2 86 LEU 86 86 86 LEU LEU A . n C 2 87 ASN 87 87 87 ASN ASN A . n C 2 88 MET 88 88 88 MET MET A . n C 2 89 GLU 89 89 89 GLU GLU A . n C 2 90 LEU 90 90 90 LEU LEU A . n C 2 91 THR 91 91 91 THR THR A . n C 2 92 ILE 92 92 92 ILE ILE A . n C 2 93 PRO 93 93 93 PRO PRO A . n C 2 94 ILE 94 94 94 ILE ILE A . n C 2 95 PHE 95 95 95 PHE PHE A . n C 2 96 ALA 96 96 96 ALA ALA A . n C 2 97 THR 97 97 97 THR THR A . n C 2 98 ASN 98 98 98 ASN ASN A . n C 2 99 SER 99 99 99 SER SER A . n C 2 100 ASP 100 100 100 ASP ASP A . n C 2 101 CYS 101 101 101 CYS CYS A . n C 2 102 GLU 102 102 102 GLU GLU A . n C 2 103 LEU 103 103 103 LEU LEU A . n C 2 104 ILE 104 104 104 ILE ILE A . n C 2 105 VAL 105 105 105 VAL VAL A . n C 2 106 LYS 106 106 106 LYS LYS A . n C 2 107 ALA 107 107 107 ALA ALA A . n C 2 108 MET 108 108 108 MET MET A . n C 2 109 GLN 109 109 109 GLN GLN A . n C 2 110 GLY 110 110 110 GLY GLY A . n C 2 111 LEU 111 111 111 LEU LEU A . n C 2 112 LEU 112 112 112 LEU LEU A . n C 2 113 LYS 113 113 113 LYS LYS A . n C 2 114 ASP 114 114 114 ASP ASP A . n C 2 115 GLY 115 115 115 GLY GLY A . n C 2 116 ASN 116 116 116 ASN ASN A . n C 2 117 PRO 117 117 117 PRO PRO A . n C 2 118 ILE 118 118 118 ILE ILE A . n C 2 119 PRO 119 119 119 PRO PRO A . n C 2 120 SER 120 120 120 SER SER A . n C 2 121 ALA 121 121 121 ALA ALA A . n C 2 122 ILE 122 122 122 ILE ILE A . n C 2 123 ALA 123 123 123 ALA ALA A . n C 2 124 ALA 124 124 124 ALA ALA A . n C 2 125 ASN 125 125 125 ASN ASN A . n C 2 126 SER 126 126 126 SER SER A . n C 2 127 GLY 127 127 127 GLY GLY A . n C 2 128 ILE 128 128 128 ILE ILE A . n C 2 129 TYR 129 129 129 TYR TYR A . n D 2 1 ALA 1 1 1 ALA ALA B . n D 2 2 SER 2 2 2 SER SER B . n D 2 3 ASN 3 3 3 ASN ASN B . n D 2 4 PHE 4 4 4 PHE PHE B . n D 2 5 THR 5 5 5 THR THR B . n D 2 6 GLN 6 6 6 GLN GLN B . n D 2 7 PHE 7 7 7 PHE PHE B . n D 2 8 VAL 8 8 8 VAL VAL B . n D 2 9 LEU 9 9 9 LEU LEU B . n D 2 10 VAL 10 10 10 VAL VAL B . n D 2 11 ASP 11 11 11 ASP ASP B . n D 2 12 ASN 12 12 12 ASN ASN B . n D 2 13 GLY 13 13 13 GLY GLY B . n D 2 14 GLY 14 14 14 GLY GLY B . n D 2 15 THR 15 15 15 THR THR B . n D 2 16 GLY 16 16 16 GLY GLY B . n D 2 17 ASP 17 17 17 ASP ASP B . n D 2 18 VAL 18 18 18 VAL VAL B . n D 2 19 THR 19 19 19 THR THR B . n D 2 20 VAL 20 20 20 VAL VAL B . n D 2 21 ALA 21 21 21 ALA ALA B . n D 2 22 PRO 22 22 22 PRO PRO B . n D 2 23 SER 23 23 23 SER SER B . n D 2 24 ASN 24 24 24 ASN ASN B . n D 2 25 PHE 25 25 25 PHE PHE B . n D 2 26 ALA 26 26 26 ALA ALA B . n D 2 27 ASN 27 27 27 ASN ASN B . n D 2 28 GLY 28 28 28 GLY GLY B . n D 2 29 VAL 29 29 29 VAL VAL B . n D 2 30 ALA 30 30 30 ALA ALA B . n D 2 31 GLU 31 31 31 GLU GLU B . n D 2 32 TRP 32 32 32 TRP TRP B . n D 2 33 ILE 33 33 33 ILE ILE B . n D 2 34 SER 34 34 34 SER SER B . n D 2 35 SER 35 35 35 SER SER B . n D 2 36 ASN 36 36 36 ASN ASN B . n D 2 37 SER 37 37 37 SER SER B . n D 2 38 ARG 38 38 38 ARG ARG B . n D 2 39 SER 39 39 39 SER SER B . n D 2 40 GLN 40 40 40 GLN GLN B . n D 2 41 ALA 41 41 41 ALA ALA B . n D 2 42 TYR 42 42 42 TYR TYR B . n D 2 43 LYS 43 43 43 LYS LYS B . n D 2 44 VAL 44 44 44 VAL VAL B . n D 2 45 THR 45 45 45 THR THR B . n D 2 46 CYS 46 46 46 CYS CYS B . n D 2 47 SER 47 47 47 SER SER B . n D 2 48 VAL 48 48 48 VAL VAL B . n D 2 49 ARG 49 49 49 ARG ARG B . n D 2 50 GLN 50 50 50 GLN GLN B . n D 2 51 SER 51 51 51 SER SER B . n D 2 52 SER 52 52 52 SER SER B . n D 2 53 ALA 53 53 53 ALA ALA B . n D 2 54 GLN 54 54 54 GLN GLN B . n D 2 55 ASN 55 55 55 ASN ASN B . n D 2 56 ARG 56 56 56 ARG ARG B . n D 2 57 LYS 57 57 57 LYS LYS B . n D 2 58 TYR 58 58 58 TYR TYR B . n D 2 59 THR 59 59 59 THR THR B . n D 2 60 ILE 60 60 60 ILE ILE B . n D 2 61 LYS 61 61 61 LYS LYS B . n D 2 62 VAL 62 62 62 VAL VAL B . n D 2 63 GLU 63 63 63 GLU GLU B . n D 2 64 VAL 64 64 64 VAL VAL B . n D 2 65 PRO 65 65 65 PRO PRO B . n D 2 66 LYS 66 66 66 LYS LYS B . n D 2 67 VAL 67 67 67 VAL VAL B . n D 2 68 ALA 68 68 68 ALA ALA B . n D 2 69 THR 69 69 69 THR THR B . n D 2 70 GLN 70 70 70 GLN GLN B . n D 2 71 THR 71 71 71 THR THR B . n D 2 72 VAL 72 72 72 VAL VAL B . n D 2 73 GLY 73 73 73 GLY GLY B . n D 2 74 GLY 74 74 74 GLY GLY B . n D 2 75 VAL 75 75 75 VAL VAL B . n D 2 76 GLU 76 76 76 GLU GLU B . n D 2 77 LEU 77 77 77 LEU LEU B . n D 2 78 PRO 78 78 78 PRO PRO B . n D 2 79 VAL 79 79 79 VAL VAL B . n D 2 80 ALA 80 80 80 ALA ALA B . n D 2 81 ALA 81 81 81 ALA ALA B . n D 2 82 TRP 82 82 82 TRP TRP B . n D 2 83 ARG 83 83 83 ARG ARG B . n D 2 84 SER 84 84 84 SER SER B . n D 2 85 TYR 85 85 85 TYR TYR B . n D 2 86 LEU 86 86 86 LEU LEU B . n D 2 87 ASN 87 87 87 ASN ASN B . n D 2 88 MET 88 88 88 MET MET B . n D 2 89 GLU 89 89 89 GLU GLU B . n D 2 90 LEU 90 90 90 LEU LEU B . n D 2 91 THR 91 91 91 THR THR B . n D 2 92 ILE 92 92 92 ILE ILE B . n D 2 93 PRO 93 93 93 PRO PRO B . n D 2 94 ILE 94 94 94 ILE ILE B . n D 2 95 PHE 95 95 95 PHE PHE B . n D 2 96 ALA 96 96 96 ALA ALA B . n D 2 97 THR 97 97 97 THR THR B . n D 2 98 ASN 98 98 98 ASN ASN B . n D 2 99 SER 99 99 99 SER SER B . n D 2 100 ASP 100 100 100 ASP ASP B . n D 2 101 CYS 101 101 101 CYS CYS B . n D 2 102 GLU 102 102 102 GLU GLU B . n D 2 103 LEU 103 103 103 LEU LEU B . n D 2 104 ILE 104 104 104 ILE ILE B . n D 2 105 VAL 105 105 105 VAL VAL B . n D 2 106 LYS 106 106 106 LYS LYS B . n D 2 107 ALA 107 107 107 ALA ALA B . n D 2 108 MET 108 108 108 MET MET B . n D 2 109 GLN 109 109 109 GLN GLN B . n D 2 110 GLY 110 110 110 GLY GLY B . n D 2 111 LEU 111 111 111 LEU LEU B . n D 2 112 LEU 112 112 112 LEU LEU B . n D 2 113 LYS 113 113 113 LYS LYS B . n D 2 114 ASP 114 114 114 ASP ASP B . n D 2 115 GLY 115 115 115 GLY GLY B . n D 2 116 ASN 116 116 116 ASN ASN B . n D 2 117 PRO 117 117 117 PRO PRO B . n D 2 118 ILE 118 118 118 ILE ILE B . n D 2 119 PRO 119 119 119 PRO PRO B . n D 2 120 SER 120 120 120 SER SER B . n D 2 121 ALA 121 121 121 ALA ALA B . n D 2 122 ILE 122 122 122 ILE ILE B . n D 2 123 ALA 123 123 123 ALA ALA B . n D 2 124 ALA 124 124 124 ALA ALA B . n D 2 125 ASN 125 125 125 ASN ASN B . n D 2 126 SER 126 126 126 SER SER B . n D 2 127 GLY 127 127 127 GLY GLY B . n D 2 128 ILE 128 128 128 ILE ILE B . n D 2 129 TYR 129 129 129 TYR TYR B . n E 2 1 ALA 1 1 1 ALA ALA C . n E 2 2 SER 2 2 2 SER SER C . n E 2 3 ASN 3 3 3 ASN ASN C . n E 2 4 PHE 4 4 4 PHE PHE C . n E 2 5 THR 5 5 5 THR THR C . n E 2 6 GLN 6 6 6 GLN GLN C . n E 2 7 PHE 7 7 7 PHE PHE C . n E 2 8 VAL 8 8 8 VAL VAL C . n E 2 9 LEU 9 9 9 LEU LEU C . n E 2 10 VAL 10 10 10 VAL VAL C . n E 2 11 ASP 11 11 11 ASP ASP C . n E 2 12 ASN 12 12 12 ASN ASN C . n E 2 13 GLY 13 13 13 GLY GLY C . n E 2 14 GLY 14 14 14 GLY GLY C . n E 2 15 THR 15 15 15 THR THR C . n E 2 16 GLY 16 16 16 GLY GLY C . n E 2 17 ASP 17 17 17 ASP ASP C . n E 2 18 VAL 18 18 18 VAL VAL C . n E 2 19 THR 19 19 19 THR THR C . n E 2 20 VAL 20 20 20 VAL VAL C . n E 2 21 ALA 21 21 21 ALA ALA C . n E 2 22 PRO 22 22 22 PRO PRO C . n E 2 23 SER 23 23 23 SER SER C . n E 2 24 ASN 24 24 24 ASN ASN C . n E 2 25 PHE 25 25 25 PHE PHE C . n E 2 26 ALA 26 26 26 ALA ALA C . n E 2 27 ASN 27 27 27 ASN ASN C . n E 2 28 GLY 28 28 28 GLY GLY C . n E 2 29 VAL 29 29 29 VAL VAL C . n E 2 30 ALA 30 30 30 ALA ALA C . n E 2 31 GLU 31 31 31 GLU GLU C . n E 2 32 TRP 32 32 32 TRP TRP C . n E 2 33 ILE 33 33 33 ILE ILE C . n E 2 34 SER 34 34 34 SER SER C . n E 2 35 SER 35 35 35 SER SER C . n E 2 36 ASN 36 36 36 ASN ASN C . n E 2 37 SER 37 37 37 SER SER C . n E 2 38 ARG 38 38 38 ARG ARG C . n E 2 39 SER 39 39 39 SER SER C . n E 2 40 GLN 40 40 40 GLN GLN C . n E 2 41 ALA 41 41 41 ALA ALA C . n E 2 42 TYR 42 42 42 TYR TYR C . n E 2 43 LYS 43 43 43 LYS LYS C . n E 2 44 VAL 44 44 44 VAL VAL C . n E 2 45 THR 45 45 45 THR THR C . n E 2 46 CYS 46 46 46 CYS CYS C . n E 2 47 SER 47 47 47 SER SER C . n E 2 48 VAL 48 48 48 VAL VAL C . n E 2 49 ARG 49 49 49 ARG ARG C . n E 2 50 GLN 50 50 50 GLN GLN C . n E 2 51 SER 51 51 51 SER SER C . n E 2 52 SER 52 52 52 SER SER C . n E 2 53 ALA 53 53 53 ALA ALA C . n E 2 54 GLN 54 54 54 GLN GLN C . n E 2 55 ASN 55 55 55 ASN ASN C . n E 2 56 ARG 56 56 56 ARG ARG C . n E 2 57 LYS 57 57 57 LYS LYS C . n E 2 58 TYR 58 58 58 TYR TYR C . n E 2 59 THR 59 59 59 THR THR C . n E 2 60 ILE 60 60 60 ILE ILE C . n E 2 61 LYS 61 61 61 LYS LYS C . n E 2 62 VAL 62 62 62 VAL VAL C . n E 2 63 GLU 63 63 63 GLU GLU C . n E 2 64 VAL 64 64 64 VAL VAL C . n E 2 65 PRO 65 65 65 PRO PRO C . n E 2 66 LYS 66 66 66 LYS LYS C . n E 2 67 VAL 67 67 67 VAL VAL C . n E 2 68 ALA 68 68 68 ALA ALA C . n E 2 69 THR 69 69 69 THR THR C . n E 2 70 GLN 70 70 70 GLN GLN C . n E 2 71 THR 71 71 71 THR THR C . n E 2 72 VAL 72 72 72 VAL VAL C . n E 2 73 GLY 73 73 73 GLY GLY C . n E 2 74 GLY 74 74 74 GLY GLY C . n E 2 75 VAL 75 75 75 VAL VAL C . n E 2 76 GLU 76 76 76 GLU GLU C . n E 2 77 LEU 77 77 77 LEU LEU C . n E 2 78 PRO 78 78 78 PRO PRO C . n E 2 79 VAL 79 79 79 VAL VAL C . n E 2 80 ALA 80 80 80 ALA ALA C . n E 2 81 ALA 81 81 81 ALA ALA C . n E 2 82 TRP 82 82 82 TRP TRP C . n E 2 83 ARG 83 83 83 ARG ARG C . n E 2 84 SER 84 84 84 SER SER C . n E 2 85 TYR 85 85 85 TYR TYR C . n E 2 86 LEU 86 86 86 LEU LEU C . n E 2 87 ASN 87 87 87 ASN ASN C . n E 2 88 MET 88 88 88 MET MET C . n E 2 89 GLU 89 89 89 GLU GLU C . n E 2 90 LEU 90 90 90 LEU LEU C . n E 2 91 THR 91 91 91 THR THR C . n E 2 92 ILE 92 92 92 ILE ILE C . n E 2 93 PRO 93 93 93 PRO PRO C . n E 2 94 ILE 94 94 94 ILE ILE C . n E 2 95 PHE 95 95 95 PHE PHE C . n E 2 96 ALA 96 96 96 ALA ALA C . n E 2 97 THR 97 97 97 THR THR C . n E 2 98 ASN 98 98 98 ASN ASN C . n E 2 99 SER 99 99 99 SER SER C . n E 2 100 ASP 100 100 100 ASP ASP C . n E 2 101 CYS 101 101 101 CYS CYS C . n E 2 102 GLU 102 102 102 GLU GLU C . n E 2 103 LEU 103 103 103 LEU LEU C . n E 2 104 ILE 104 104 104 ILE ILE C . n E 2 105 VAL 105 105 105 VAL VAL C . n E 2 106 LYS 106 106 106 LYS LYS C . n E 2 107 ALA 107 107 107 ALA ALA C . n E 2 108 MET 108 108 108 MET MET C . n E 2 109 GLN 109 109 109 GLN GLN C . n E 2 110 GLY 110 110 110 GLY GLY C . n E 2 111 LEU 111 111 111 LEU LEU C . n E 2 112 LEU 112 112 112 LEU LEU C . n E 2 113 LYS 113 113 113 LYS LYS C . n E 2 114 ASP 114 114 114 ASP ASP C . n E 2 115 GLY 115 115 115 GLY GLY C . n E 2 116 ASN 116 116 116 ASN ASN C . n E 2 117 PRO 117 117 117 PRO PRO C . n E 2 118 ILE 118 118 118 ILE ILE C . n E 2 119 PRO 119 119 119 PRO PRO C . n E 2 120 SER 120 120 120 SER SER C . n E 2 121 ALA 121 121 121 ALA ALA C . n E 2 122 ILE 122 122 122 ILE ILE C . n E 2 123 ALA 123 123 123 ALA ALA C . n E 2 124 ALA 124 124 124 ALA ALA C . n E 2 125 ASN 125 125 125 ASN ASN C . n E 2 126 SER 126 126 126 SER SER C . n E 2 127 GLY 127 127 127 GLY GLY C . n E 2 128 ILE 128 128 128 ILE ILE C . n E 2 129 TYR 129 129 129 TYR TYR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 HOH 1 2059 2059 HOH HOH R . F 3 HOH 2 2061 2061 HOH HOH R . F 3 HOH 3 2063 2063 HOH HOH R . G 3 HOH 1 2076 2076 HOH HOH S . H 3 HOH 1 130 3 HOH HOH A . H 3 HOH 2 131 5 HOH HOH A . H 3 HOH 3 132 10 HOH HOH A . H 3 HOH 4 133 17 HOH HOH A . H 3 HOH 5 134 20 HOH HOH A . H 3 HOH 6 135 28 HOH HOH A . H 3 HOH 7 136 30 HOH HOH A . H 3 HOH 8 137 35 HOH HOH A . H 3 HOH 9 138 36 HOH HOH A . H 3 HOH 10 139 39 HOH HOH A . H 3 HOH 11 140 41 HOH HOH A . H 3 HOH 12 141 45 HOH HOH A . H 3 HOH 13 142 50 HOH HOH A . H 3 HOH 14 143 55 HOH HOH A . H 3 HOH 15 144 56 HOH HOH A . H 3 HOH 16 145 58 HOH HOH A . H 3 HOH 17 146 68 HOH HOH A . H 3 HOH 18 147 75 HOH HOH A . H 3 HOH 19 148 80 HOH HOH A . H 3 HOH 20 149 88 HOH HOH A . H 3 HOH 21 150 93 HOH HOH A . H 3 HOH 22 151 94 HOH HOH A . H 3 HOH 23 152 96 HOH HOH A . H 3 HOH 24 153 97 HOH HOH A . H 3 HOH 25 154 99 HOH HOH A . H 3 HOH 26 155 100 HOH HOH A . H 3 HOH 27 156 101 HOH HOH A . H 3 HOH 28 157 138 HOH HOH A . H 3 HOH 29 158 162 HOH HOH A . H 3 HOH 30 159 166 HOH HOH A . H 3 HOH 31 160 174 HOH HOH A . H 3 HOH 32 161 177 HOH HOH A . H 3 HOH 33 162 209 HOH HOH A . H 3 HOH 34 163 1002 HOH HOH A . H 3 HOH 35 164 2005 HOH HOH A . H 3 HOH 36 165 2012 HOH HOH A . H 3 HOH 37 166 2038 HOH HOH A . H 3 HOH 38 167 2043 HOH HOH A . H 3 HOH 39 168 2047 HOH HOH A . H 3 HOH 40 169 2048 HOH HOH A . H 3 HOH 41 170 2068 HOH HOH A . H 3 HOH 42 171 2100 HOH HOH A . I 3 HOH 1 130 2 HOH HOH B . I 3 HOH 2 131 6 HOH HOH B . I 3 HOH 3 132 7 HOH HOH B . I 3 HOH 4 133 12 HOH HOH B . I 3 HOH 5 134 13 HOH HOH B . I 3 HOH 6 135 14 HOH HOH B . I 3 HOH 7 136 15 HOH HOH B . I 3 HOH 8 137 21 HOH HOH B . I 3 HOH 9 138 22 HOH HOH B . I 3 HOH 10 139 23 HOH HOH B . I 3 HOH 11 140 25 HOH HOH B . I 3 HOH 12 141 32 HOH HOH B . I 3 HOH 13 142 37 HOH HOH B . I 3 HOH 14 143 43 HOH HOH B . I 3 HOH 15 144 46 HOH HOH B . I 3 HOH 16 145 49 HOH HOH B . I 3 HOH 17 146 59 HOH HOH B . I 3 HOH 18 147 69 HOH HOH B . I 3 HOH 19 148 71 HOH HOH B . I 3 HOH 20 149 72 HOH HOH B . I 3 HOH 21 150 73 HOH HOH B . I 3 HOH 22 151 74 HOH HOH B . I 3 HOH 23 152 76 HOH HOH B . I 3 HOH 24 153 78 HOH HOH B . I 3 HOH 25 154 79 HOH HOH B . I 3 HOH 26 155 82 HOH HOH B . I 3 HOH 27 156 83 HOH HOH B . I 3 HOH 28 157 86 HOH HOH B . I 3 HOH 29 158 103 HOH HOH B . I 3 HOH 30 159 104 HOH HOH B . I 3 HOH 31 160 106 HOH HOH B . I 3 HOH 32 161 110 HOH HOH B . I 3 HOH 33 162 111 HOH HOH B . I 3 HOH 34 163 112 HOH HOH B . I 3 HOH 35 164 113 HOH HOH B . I 3 HOH 36 165 117 HOH HOH B . I 3 HOH 37 166 119 HOH HOH B . I 3 HOH 38 167 121 HOH HOH B . I 3 HOH 39 168 124 HOH HOH B . I 3 HOH 40 169 125 HOH HOH B . I 3 HOH 41 170 126 HOH HOH B . I 3 HOH 42 171 127 HOH HOH B . I 3 HOH 43 172 128 HOH HOH B . I 3 HOH 44 173 129 HOH HOH B . I 3 HOH 45 174 132 HOH HOH B . I 3 HOH 46 175 133 HOH HOH B . I 3 HOH 47 176 136 HOH HOH B . I 3 HOH 48 177 137 HOH HOH B . I 3 HOH 49 178 139 HOH HOH B . I 3 HOH 50 179 141 HOH HOH B . I 3 HOH 51 180 158 HOH HOH B . I 3 HOH 52 181 160 HOH HOH B . I 3 HOH 53 182 179 HOH HOH B . I 3 HOH 54 183 197 HOH HOH B . I 3 HOH 55 184 200 HOH HOH B . I 3 HOH 56 185 202 HOH HOH B . I 3 HOH 57 186 228 HOH HOH B . I 3 HOH 58 187 983 HOH HOH B . I 3 HOH 59 188 1008 HOH HOH B . I 3 HOH 60 189 2001 HOH HOH B . I 3 HOH 61 190 2002 HOH HOH B . I 3 HOH 62 191 2004 HOH HOH B . I 3 HOH 63 192 2008 HOH HOH B . I 3 HOH 64 193 2009 HOH HOH B . I 3 HOH 65 194 2011 HOH HOH B . I 3 HOH 66 195 2013 HOH HOH B . I 3 HOH 67 196 2027 HOH HOH B . I 3 HOH 68 197 2031 HOH HOH B . I 3 HOH 69 198 2034 HOH HOH B . I 3 HOH 70 199 2036 HOH HOH B . I 3 HOH 71 200 2044 HOH HOH B . I 3 HOH 72 201 2090 HOH HOH B . I 3 HOH 73 202 3014 HOH HOH B . J 3 HOH 1 130 1 HOH HOH C . J 3 HOH 2 131 9 HOH HOH C . J 3 HOH 3 132 11 HOH HOH C . J 3 HOH 4 133 16 HOH HOH C . J 3 HOH 5 134 18 HOH HOH C . J 3 HOH 6 135 19 HOH HOH C . J 3 HOH 7 136 26 HOH HOH C . J 3 HOH 8 137 27 HOH HOH C . J 3 HOH 9 138 38 HOH HOH C . J 3 HOH 10 139 44 HOH HOH C . J 3 HOH 11 140 48 HOH HOH C . J 3 HOH 12 141 51 HOH HOH C . J 3 HOH 13 142 52 HOH HOH C . J 3 HOH 14 143 53 HOH HOH C . J 3 HOH 15 144 54 HOH HOH C . J 3 HOH 16 145 61 HOH HOH C . J 3 HOH 17 146 102 HOH HOH C . J 3 HOH 18 147 118 HOH HOH C . J 3 HOH 19 148 122 HOH HOH C . J 3 HOH 20 149 123 HOH HOH C . J 3 HOH 21 150 142 HOH HOH C . J 3 HOH 22 151 144 HOH HOH C . J 3 HOH 23 152 146 HOH HOH C . J 3 HOH 24 153 150 HOH HOH C . J 3 HOH 25 154 151 HOH HOH C . J 3 HOH 26 155 154 HOH HOH C . J 3 HOH 27 156 155 HOH HOH C . J 3 HOH 28 157 156 HOH HOH C . J 3 HOH 29 158 163 HOH HOH C . J 3 HOH 30 159 164 HOH HOH C . J 3 HOH 31 160 165 HOH HOH C . J 3 HOH 32 161 188 HOH HOH C . J 3 HOH 33 162 192 HOH HOH C . J 3 HOH 34 163 196 HOH HOH C . J 3 HOH 35 164 203 HOH HOH C . J 3 HOH 36 165 207 HOH HOH C . J 3 HOH 37 166 218 HOH HOH C . J 3 HOH 38 167 938 HOH HOH C . J 3 HOH 39 168 1003 HOH HOH C . J 3 HOH 40 169 1010 HOH HOH C . J 3 HOH 41 170 1011 HOH HOH C . J 3 HOH 42 171 1015 HOH HOH C . J 3 HOH 43 172 2021 HOH HOH C . J 3 HOH 44 173 2029 HOH HOH C . J 3 HOH 45 174 2032 HOH HOH C . J 3 HOH 46 175 2058 HOH HOH C . J 3 HOH 47 176 2060 HOH HOH C . J 3 HOH 48 177 2074 HOH HOH C . J 3 HOH 49 178 3003 HOH HOH C . J 3 HOH 50 179 3012 HOH HOH C . J 3 HOH 51 180 3013 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 300-MERIC 300 2 'icosahedral asymmetric unit' ? pentameric 5 3 'icosahedral pentamer' ? 25-meric 25 4 'icosahedral 23 hexamer' ? 30-meric 30 5 'icosahedral asymmetric unit, std point frame' ? pentameric 5 6 'crystal asymmetric unit, crystal frame' ? 50-meric 50 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 '(1-5)' A,B,C,D,E,F,G,H,I,J 4 '(1,2,6,10,23,24)' A,B,C,D,E,F,G,H,I,J 5 P A,B,C,D,E,F,G,H,I,J 6 '(X0)(1-10)' A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 P 'transform to point frame' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.35682303 0.93417204 0.00000 0.00000000 -0.93417204 0.35682303 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.75576191 -0.57734954 0.00000 0.75576185 0.56366034 -0.33333315 0.00000 0.57734950 -0.33333315 0.74535665 0.00000 3 'point symmetry operation' ? ? -0.80901699 -0.46708655 -0.35682164 0.00000 0.46708651 -0.14235205 -0.87267752 0.00000 0.35682162 -0.87267752 0.33333506 0.00000 4 'point symmetry operation' ? ? -0.80901699 0.46708655 0.35682164 0.00000 -0.46708651 -0.14235205 -0.87267752 0.00000 -0.35682162 -0.87267752 0.33333506 0.00000 5 'point symmetry operation' ? ? 0.30901699 0.75576191 0.57734954 0.00000 -0.75576185 0.56366034 -0.33333315 0.00000 -0.57734950 -0.33333315 0.74535665 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.74535467 -0.66666814 0.00000 0.00000000 -0.66666814 -0.74535467 0.00000 7 'point symmetry operation' ? ? -0.30901699 0.75576191 0.57734954 0.00000 0.17841012 0.64234946 -0.74535695 0.00000 -0.93417250 -0.12732297 -0.33333247 0.00000 8 'point symmetry operation' ? ? 0.80901699 0.46708655 0.35682164 0.00000 0.11026351 0.47568353 -0.87267813 0.00000 -0.57735035 0.74535585 0.33333345 0.00000 9 'point symmetry operation' ? ? 0.80901699 -0.46708655 -0.35682164 0.00000 -0.11026351 0.47568353 -0.87267813 0.00000 0.57735035 0.74535585 0.33333345 0.00000 10 'point symmetry operation' ? ? -0.30901699 -0.75576191 -0.57734954 0.00000 -0.17841012 0.64234946 -0.74535695 0.00000 0.93417250 -0.12732297 -0.33333247 0.00000 11 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -0.74535467 0.66666814 0.00000 0.00000000 0.66666814 0.74535467 0.00000 12 'point symmetry operation' ? ? -0.30901699 0.75576191 0.57734954 0.00000 -0.17841012 -0.64234946 0.74535695 0.00000 0.93417250 0.12732297 0.33333247 0.00000 13 'point symmetry operation' ? ? 0.80901699 0.46708655 0.35682164 0.00000 -0.11026351 -0.47568353 0.87267813 0.00000 0.57735035 -0.74535585 -0.33333345 0.00000 14 'point symmetry operation' ? ? 0.80901699 -0.46708655 -0.35682164 0.00000 0.11026351 -0.47568353 0.87267813 0.00000 -0.57735035 -0.74535585 -0.33333345 0.00000 15 'point symmetry operation' ? ? -0.30901699 -0.75576191 -0.57734954 0.00000 0.17841012 -0.64234946 0.74535695 0.00000 -0.93417250 0.12732297 0.33333247 0.00000 16 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? 0.30901699 -0.75576191 -0.57734954 0.00000 -0.75576185 -0.56366034 0.33333315 0.00000 -0.57734950 0.33333315 -0.74535665 0.00000 18 'point symmetry operation' ? ? -0.80901699 -0.46708655 -0.35682164 0.00000 -0.46708651 0.14235205 0.87267752 0.00000 -0.35682162 0.87267752 -0.33333506 0.00000 19 'point symmetry operation' ? ? -0.80901699 0.46708655 0.35682164 0.00000 0.46708651 0.14235205 0.87267752 0.00000 0.35682162 0.87267752 -0.33333506 0.00000 20 'point symmetry operation' ? ? 0.30901699 0.75576191 0.57734954 0.00000 0.75576185 -0.56366034 0.33333315 0.00000 0.57734950 0.33333315 -0.74535665 0.00000 21 'point symmetry operation' ? ? 0.00000000 -0.93417204 0.35682303 0.00000 0.35682300 -0.33333407 -0.87267733 0.00000 0.93417197 0.12732266 0.33333407 0.00000 22 'point symmetry operation' ? ? -0.50000000 -0.64549667 0.57735093 0.00000 -0.64549663 -0.16666815 -0.74535615 0.00000 0.57735088 -0.74535615 -0.33333185 0.00000 23 'point symmetry operation' ? ? -0.30901699 -0.17841013 0.93417257 0.00000 -0.75576185 0.64234946 -0.12732297 0.00000 -0.57734950 -0.74535695 -0.33333247 0.00000 24 'point symmetry operation' ? ? 0.30901699 -0.17841013 0.93417257 0.00000 0.17841012 0.97568391 0.12732136 0.00000 -0.93417250 0.12732137 0.33333308 0.00000 25 'point symmetry operation' ? ? 0.50000000 -0.64549667 0.57735093 0.00000 0.86602536 0.37267832 -0.33333297 0.00000 0.00000000 0.66666704 0.74535566 0.00000 26 'point symmetry operation' ? ? 0.00000000 -0.93417204 0.35682303 0.00000 -0.35682300 0.33333407 0.87267733 0.00000 -0.93417197 -0.12732266 -0.33333407 0.00000 27 'point symmetry operation' ? ? -0.50000000 -0.64549667 0.57735093 0.00000 0.64549663 0.16666815 0.74535615 0.00000 -0.57735088 0.74535615 0.33333185 0.00000 28 'point symmetry operation' ? ? -0.30901699 -0.17841013 0.93417257 0.00000 0.75576185 -0.64234946 0.12732297 0.00000 0.57734950 0.74535695 0.33333247 0.00000 29 'point symmetry operation' ? ? 0.30901699 -0.17841013 0.93417257 0.00000 -0.17841012 -0.97568391 -0.12732136 0.00000 0.93417250 -0.12732137 -0.33333308 0.00000 30 'point symmetry operation' ? ? 0.50000000 -0.64549667 0.57735093 0.00000 -0.86602536 -0.37267832 0.33333297 0.00000 0.00000000 -0.66666704 -0.74535566 0.00000 31 'point symmetry operation' ? ? 0.00000000 0.93417204 -0.35682303 0.00000 -0.35682300 -0.33333407 -0.87267733 0.00000 -0.93417197 0.12732266 0.33333407 0.00000 32 'point symmetry operation' ? ? 0.50000000 0.64549667 -0.57735093 0.00000 -0.86602536 0.37267832 -0.33333297 0.00000 0.00000000 0.66666704 0.74535566 0.00000 33 'point symmetry operation' ? ? 0.30901699 0.17841013 -0.93417257 0.00000 -0.17841012 0.97568391 0.12732136 0.00000 0.93417250 0.12732137 0.33333308 0.00000 34 'point symmetry operation' ? ? -0.30901699 0.17841013 -0.93417257 0.00000 0.75576185 0.64234946 -0.12732297 0.00000 0.57734950 -0.74535695 -0.33333247 0.00000 35 'point symmetry operation' ? ? -0.50000000 0.64549667 -0.57735093 0.00000 0.64549663 -0.16666815 -0.74535615 0.00000 -0.57735088 -0.74535615 -0.33333185 0.00000 36 'point symmetry operation' ? ? 0.00000000 0.93417204 -0.35682303 0.00000 0.35682300 0.33333407 0.87267733 0.00000 0.93417197 -0.12732266 -0.33333407 0.00000 37 'point symmetry operation' ? ? 0.50000000 0.64549667 -0.57735093 0.00000 0.86602536 -0.37267832 0.33333297 0.00000 0.00000000 -0.66666704 -0.74535566 0.00000 38 'point symmetry operation' ? ? 0.30901699 0.17841013 -0.93417257 0.00000 0.17841012 -0.97568391 -0.12732136 0.00000 -0.93417250 -0.12732137 -0.33333308 0.00000 39 'point symmetry operation' ? ? -0.30901699 0.17841013 -0.93417257 0.00000 -0.75576185 -0.64234946 0.12732297 0.00000 -0.57734950 0.74535695 0.33333247 0.00000 40 'point symmetry operation' ? ? -0.50000000 0.64549667 -0.57735093 0.00000 -0.64549663 0.16666815 0.74535615 0.00000 0.57735088 0.74535615 0.33333185 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.35682303 0.93417204 0.00000 -0.93417197 -0.33333407 0.12732266 0.00000 0.35682300 -0.87267733 0.33333407 0.00000 42 'point symmetry operation' ? ? 0.80901699 -0.11026352 0.57735040 0.00000 -0.46708651 0.47568354 0.74535584 0.00000 -0.35682162 -0.87267813 0.33333346 0.00000 43 'point symmetry operation' ? ? 0.50000000 -0.86602543 0.00000000 0.00000 0.64549663 0.37267832 0.66666703 0.00000 -0.57735088 -0.33333296 0.74535566 0.00000 44 'point symmetry operation' ? ? -0.50000000 -0.86602543 0.00000000 0.00000 0.86602536 -0.50000000 0.00000148 0.00000 0.00000000 0.00000148 1.00000000 0.00000 45 'point symmetry operation' ? ? -0.80901699 -0.11026352 0.57735040 0.00000 -0.11026351 -0.93633966 -0.33333166 0.00000 0.57735035 -0.33333167 0.74535665 0.00000 46 'point symmetry operation' ? ? 0.00000000 -0.35682303 -0.93417204 0.00000 0.93417197 -0.33333407 0.12732266 0.00000 -0.35682300 -0.87267733 0.33333407 0.00000 47 'point symmetry operation' ? ? -0.80901699 0.11026352 -0.57735040 0.00000 0.11026351 -0.93633966 -0.33333166 0.00000 -0.57735035 -0.33333167 0.74535665 0.00000 48 'point symmetry operation' ? ? -0.50000000 0.86602543 0.00000000 0.00000 -0.86602536 -0.50000000 0.00000148 0.00000 0.00000000 0.00000148 1.00000000 0.00000 49 'point symmetry operation' ? ? 0.50000000 0.86602543 0.00000000 0.00000 -0.64549663 0.37267832 0.66666703 0.00000 0.57735088 -0.33333296 0.74535566 0.00000 50 'point symmetry operation' ? ? 0.80901699 0.11026352 -0.57735040 0.00000 0.46708651 0.47568354 0.74535584 0.00000 0.35682162 -0.87267813 0.33333346 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.35682303 0.93417204 0.00000 0.93417197 0.33333407 -0.12732266 0.00000 -0.35682300 0.87267733 -0.33333407 0.00000 52 'point symmetry operation' ? ? 0.80901699 -0.11026352 0.57735040 0.00000 0.46708651 -0.47568354 -0.74535584 0.00000 0.35682162 0.87267813 -0.33333346 0.00000 53 'point symmetry operation' ? ? 0.50000000 -0.86602543 0.00000000 0.00000 -0.64549663 -0.37267832 -0.66666703 0.00000 0.57735088 0.33333296 -0.74535566 0.00000 54 'point symmetry operation' ? ? -0.50000000 -0.86602543 0.00000000 0.00000 -0.86602536 0.50000000 -0.00000148 0.00000 0.00000000 -0.00000148 -1.00000000 0.00000 55 'point symmetry operation' ? ? -0.80901699 -0.11026352 0.57735040 0.00000 0.11026351 0.93633966 0.33333166 0.00000 -0.57735035 0.33333167 -0.74535665 0.00000 56 'point symmetry operation' ? ? 0.00000000 -0.35682303 -0.93417204 0.00000 -0.93417197 0.33333407 -0.12732266 0.00000 0.35682300 0.87267733 -0.33333407 0.00000 57 'point symmetry operation' ? ? -0.80901699 0.11026352 -0.57735040 0.00000 -0.11026351 0.93633966 0.33333166 0.00000 0.57735035 0.33333167 -0.74535665 0.00000 58 'point symmetry operation' ? ? -0.50000000 0.86602543 0.00000000 0.00000 0.86602536 0.50000000 -0.00000148 0.00000 0.00000000 -0.00000148 -1.00000000 0.00000 59 'point symmetry operation' ? ? 0.50000000 0.86602543 0.00000000 0.00000 0.64549663 -0.37267832 -0.66666703 0.00000 -0.57735088 0.33333296 -0.74535566 0.00000 60 'point symmetry operation' ? ? 0.80901699 0.11026352 -0.57735040 0.00000 -0.46708651 -0.47568354 -0.74535584 0.00000 -0.35682162 0.87267813 -0.33333346 0.00000 # _pdbx_point_symmetry.entry_id 1ZDJ _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.H-M_notation 532 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-08 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-04-19 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation ? 'Coordinates and associated matrices have been transformed from the icosahedral point symmetry frame to the crystallographic frame' # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' cell 3 4 'Structure model' database_2 4 4 'Structure model' database_PDB_matrix 5 4 'Structure model' pdbx_database_remark 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' pdbx_validate_rmsd_angle 8 4 'Structure model' pdbx_validate_torsion 9 4 'Structure model' software 10 4 'Structure model' struct_ncs_oper # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_cell.Z_PDB' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_database_PDB_matrix.origx[1][1]' 8 4 'Structure model' '_database_PDB_matrix.origx[2][2]' 9 4 'Structure model' '_database_PDB_matrix.origx[2][3]' 10 4 'Structure model' '_database_PDB_matrix.origx[3][2]' 11 4 'Structure model' '_database_PDB_matrix.origx[3][3]' 12 4 'Structure model' '_pdbx_struct_oper_list.id' 13 4 'Structure model' '_pdbx_struct_oper_list.matrix[1][1]' 14 4 'Structure model' '_pdbx_struct_oper_list.matrix[1][2]' 15 4 'Structure model' '_pdbx_struct_oper_list.matrix[1][3]' 16 4 'Structure model' '_pdbx_struct_oper_list.matrix[2][1]' 17 4 'Structure model' '_pdbx_struct_oper_list.matrix[2][2]' 18 4 'Structure model' '_pdbx_struct_oper_list.matrix[2][3]' 19 4 'Structure model' '_pdbx_struct_oper_list.matrix[3][1]' 20 4 'Structure model' '_pdbx_struct_oper_list.matrix[3][2]' 21 4 'Structure model' '_pdbx_struct_oper_list.matrix[3][3]' 22 4 'Structure model' '_pdbx_struct_oper_list.name' 23 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 24 4 'Structure model' '_pdbx_struct_oper_list.type' 25 4 'Structure model' '_pdbx_validate_rmsd_angle.angle_deviation' 26 4 'Structure model' '_pdbx_validate_rmsd_angle.angle_value' 27 4 'Structure model' '_pdbx_validate_torsion.phi' 28 4 'Structure model' '_pdbx_validate_torsion.psi' 29 4 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 CCP4 'data scaling' '(AGROVATA' ? 3 ROTAVATA 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 1ZDJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE RNA MOLECULE IS NUMBERED FROM 7 - 14 IN THE ENTRY. IN PUBLICATIONS, THE NUMBERING IS RELATED TO THE BEGINNING OF THE INITIATION CODON OF THE REPLICASE GENE (+1). THUS, RESIDUES 7 - 14 IN THE ENTRY CORRESPOND TO -9 - -2. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A CYS 46 ? ? SG A CYS 46 ? ? 1.486 1.812 -0.326 0.016 N 2 1 CB A CYS 101 ? ? SG A CYS 101 ? ? 1.966 1.818 0.148 0.017 N 3 1 CB B CYS 46 ? ? SG B CYS 46 ? ? 1.645 1.812 -0.167 0.016 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 SER _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 SER _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 SER _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 92.80 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -18.20 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 166.73 121.75 2 1 SER A 23 ? ? -140.02 -7.81 3 1 ASN A 24 ? ? -175.93 148.04 4 1 PHE A 25 ? ? -142.25 24.58 5 1 SER B 2 ? ? 154.80 102.30 6 1 PHE B 25 ? ? -143.11 19.62 7 1 ILE B 94 ? ? -58.73 -7.71 8 1 PHE C 4 ? ? -100.34 65.77 9 1 ASN C 12 ? ? -107.47 73.21 10 1 ASN C 36 ? ? 70.83 -170.43 11 1 SER C 37 ? ? -37.79 124.51 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U R 10 ? ? 0.077 'SIDE CHAIN' 2 1 C R 14 ? ? 0.089 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1ZDJ _ndb_struct_conf_na.feature 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 8 1_555 0.087 -0.051 -0.139 -6.828 -1.134 -5.676 1 R_G7:C14_R R 7 ? R 14 ? 19 1 1 A G 2 1_555 A C 7 1_555 -0.402 -0.184 0.594 13.621 5.601 -2.605 2 R_G8:C13_R R 8 ? R 13 ? 19 1 1 B G 1 1_555 B C 8 1_555 -0.949 -0.210 -0.096 -8.153 -10.321 -1.250 3 S_G7:C14_S S 7 ? S 14 ? 19 1 1 B G 2 1_555 B C 7 1_555 -0.295 -0.301 0.519 9.321 9.714 3.087 4 S_G8:C13_S S 8 ? S 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 8 1_555 A G 2 1_555 A C 7 1_555 0.841 -2.064 2.559 -8.793 -1.050 28.294 -3.869 -3.051 2.274 -2.085 17.455 29.620 1 RR_G7G8:C13C14_RR R 7 ? R 14 ? R 8 ? R 13 ? 1 B G 1 1_555 B C 8 1_555 B G 2 1_555 B C 7 1_555 -0.428 -1.858 2.552 -7.674 -1.957 33.276 -2.911 -0.256 2.683 -3.359 13.169 34.180 2 SS_G7G8:C13C14_SS S 7 ? S 14 ? S 8 ? S 13 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #