data_1ZEV # _entry.id 1ZEV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZEV pdb_00001zev 10.2210/pdb1zev/pdb NDB AR0062 ? ? RCSB RCSB032638 ? ? WWPDB D_1000032638 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_special_symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZEV _pdbx_database_status.recvd_initial_deposition_date 2005-04-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.' 1 'Logue, J.S.' 2 'Berglund, J.A.' 3 # _citation.id primary _citation.title 'The structural basis of myotonic dystrophy from the crystal structure of CUG repeats.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 16626 _citation.page_last 16631 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16269545 _citation.pdbx_database_id_DOI 10.1073/pnas.0505873102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.' 1 ? primary 'Logue, J.S.' 2 ? primary 'Berglund, J.A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3'" 5694.363 2 ? ? ? ? 2 water nat water 18.015 41 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUGCUGCUGCUGCUGCUG _entity_poly.pdbx_seq_one_letter_code_can CUGCUGCUGCUGCUGCUG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 C n 1 5 U n 1 6 G n 1 7 C n 1 8 U n 1 9 G n 1 10 C n 1 11 U n 1 12 G n 1 13 C n 1 14 U n 1 15 G n 1 16 C n 1 17 U n 1 18 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 G 3 3 3 G G B . n B 1 4 C 4 4 4 C C B . n B 1 5 U 5 5 5 U U B . n B 1 6 G 6 6 6 G G B . n B 1 7 C 7 7 7 C C B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n B 1 17 U 17 17 17 U U B . n B 1 18 G 18 18 18 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 19 1 HOH HOH A . C 2 HOH 2 20 2 HOH HOH A . C 2 HOH 3 21 7 HOH HOH A . C 2 HOH 4 22 8 HOH HOH A . C 2 HOH 5 23 11 HOH HOH A . C 2 HOH 6 24 13 HOH HOH A . C 2 HOH 7 25 14 HOH HOH A . C 2 HOH 8 26 15 HOH HOH A . C 2 HOH 9 27 16 HOH HOH A . C 2 HOH 10 28 17 HOH HOH A . C 2 HOH 11 29 18 HOH HOH A . C 2 HOH 12 30 19 HOH HOH A . C 2 HOH 13 31 20 HOH HOH A . C 2 HOH 14 32 21 HOH HOH A . C 2 HOH 15 33 23 HOH HOH A . C 2 HOH 16 34 24 HOH HOH A . C 2 HOH 17 35 27 HOH HOH A . C 2 HOH 18 36 31 HOH HOH A . C 2 HOH 19 37 33 HOH HOH A . C 2 HOH 20 38 34 HOH HOH A . C 2 HOH 21 39 35 HOH HOH A . C 2 HOH 22 40 36 HOH HOH A . C 2 HOH 23 41 38 HOH HOH A . C 2 HOH 24 42 39 HOH HOH A . C 2 HOH 25 43 40 HOH HOH A . C 2 HOH 26 44 41 HOH HOH A . D 2 HOH 1 19 3 HOH HOH B . D 2 HOH 2 20 4 HOH HOH B . D 2 HOH 3 21 5 HOH HOH B . D 2 HOH 4 22 6 HOH HOH B . D 2 HOH 5 23 9 HOH HOH B . D 2 HOH 6 24 10 HOH HOH B . D 2 HOH 7 25 12 HOH HOH B . D 2 HOH 8 26 22 HOH HOH B . D 2 HOH 9 27 25 HOH HOH B . D 2 HOH 10 28 26 HOH HOH B . D 2 HOH 11 29 28 HOH HOH B . D 2 HOH 12 30 29 HOH HOH B . D 2 HOH 13 31 30 HOH HOH B . D 2 HOH 14 32 32 HOH HOH B . D 2 HOH 15 33 37 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 Blu-Ice 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 # _cell.entry_id 1ZEV _cell.length_a 39.102 _cell.length_b 39.102 _cell.length_c 141.277 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1ZEV _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZEV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 52.6 _exptl_crystal.description 'DETERMINED BY MODEL BUILDING IN MAD MAP BUT REFINED AGAINST ONLY THE NATIVE DATA.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'MOPS, NaCl, MgCL2, MPD, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MOPS ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MgCL2 ? ? ? 1 4 1 MPD ? ? ? 1 5 1 H2O ? ? ? 1 6 2 NaCl ? ? ? 1 7 2 MgCL2 ? ? ? 1 8 2 MPD ? ? ? 1 9 2 H2O ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100.0 ? 1 2 100.0 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2004-07-25 ? 2 CCD 'ADSC QUANTUM 4' 2004-04-05 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 2 M ? MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8860 1.0 2 0.9198 1.0 3 0.9204 1.0 4 0.8856 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ALS 8.2.1 0.8860 ? 2 SYNCHROTRON 'ALS BEAMLINE 8.2.2' ALS 8.2.2 ? '0.9198, 0.9204, 0.8856' # _reflns.entry_id 1ZEV _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.550 _reflns.d_resolution_high 1.580 _reflns.number_obs 11050 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 40.5 _reflns.B_iso_Wilson_estimate 23.5 _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.365 _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1ZEV _refine.ls_number_reflns_obs 9965 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.55 _refine.ls_d_res_high 1.58 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 1085 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.B_iso_mean 28.437 _refine.aniso_B[1][1] 0.57000 _refine.aniso_B[2][2] 0.57000 _refine.aniso_B[3][3] -0.86000 _refine.aniso_B[1][2] 0.29000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS BUT WERE NOT ADDED TO COORDINATES. THERE ARE TWO OVERLAPPED DUPLEXES IN THE ASU, EACH WITH AN OCCUPANCY OF O.5. REMARK 3 CONTAINS TLS DETAILS FOR MODEL 1 IN THE COORDINATES, REMARK 7 CONTAINS TLS DETAILS FOR MODEL 2 IN THE COORDINATES. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.236 _refine.pdbx_overall_ESU_R_Free 0.182 _refine.overall_SU_ML 0.140 _refine.overall_SU_B 8.170 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 750 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 791 _refine_hist.d_res_high 1.58 _refine_hist.d_res_low 19.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1664 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.060 3.000 ? 2584 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 356 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 720 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.212 0.500 ? 221 'X-RAY DIFFRACTION' ? r_nbd_other 0.212 0.500 ? 443 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.315 0.500 ? 576 'X-RAY DIFFRACTION' ? r_nbtor_other 0.065 0.500 ? 313 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.358 0.500 ? 36 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.132 0.150 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.174 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.311 0.500 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.556 3.000 ? 2308 'X-RAY DIFFRACTION' ? r_scangle_it 1.895 4.500 ? 2584 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.58 _refine_ls_shell.d_res_low 1.62 _refine_ls_shell.number_reflns_R_work 753 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.346 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1ZEV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZEV _struct.title 'Crystal Structure of a Pathogenic RNA: CUG Repeats' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZEV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'UU mismatches, triplet repeats, causitive agent of myotonic dystrophy type I, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ZEV _struct_ref.pdbx_db_accession 1ZEV _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZEV A 1 ? 18 ? 1ZEV 1 ? 18 ? 1 18 2 1 1ZEV B 1 ? 18 ? 1ZEV 1 ? 18 ? 1 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 A ? ? 1_555 B G 18 N1 A ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 A ? ? 1_555 B G 18 O6 A ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 A ? ? 1_555 B G 18 N2 A ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 A ? ? 1_555 B U 17 O2 A ? A U 2 B U 17 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog5 hydrog ? ? A U 2 O4 A ? ? 1_555 B U 17 N3 A ? A U 2 B U 17 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 A ? ? 1_555 B C 16 N3 A ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 A ? ? 1_555 B C 16 O2 A ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 A ? ? 1_555 B C 16 N4 A ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 A ? ? 1_555 B G 15 N1 A ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 A ? ? 1_555 B G 15 O6 A ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 A ? ? 1_555 B G 15 N2 A ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 A ? ? 1_555 B C 13 N3 A ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 A ? ? 1_555 B C 13 O2 A ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 A ? ? 1_555 B C 13 N4 A ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 A ? ? 1_555 B G 12 N1 A ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 A ? ? 1_555 B G 12 O6 A ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 A ? ? 1_555 B G 12 N2 A ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N1 A ? ? 1_555 B C 10 N3 A ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N2 A ? ? 1_555 B C 10 O2 A ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 O6 A ? ? 1_555 B C 10 N4 A ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 A ? ? 1_555 B G 9 N1 A ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 A ? ? 1_555 B G 9 O6 A ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 A ? ? 1_555 B G 9 N2 A ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 A ? ? 1_555 B U 8 N3 A ? A U 11 B U 8 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 12 N1 A ? ? 1_555 B C 7 N3 A ? A G 12 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 A ? ? 1_555 B C 7 O2 A ? A G 12 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 A ? ? 1_555 B C 7 N4 A ? A G 12 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 A ? ? 1_555 B G 6 N1 A ? A C 13 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 A ? ? 1_555 B G 6 O6 A ? A C 13 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 A ? ? 1_555 B G 6 N2 A ? A C 13 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 A ? ? 1_555 B C 4 N3 A ? A G 15 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 A ? ? 1_555 B C 4 O2 A ? A G 15 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 A ? ? 1_555 B C 4 N4 A ? A G 15 B C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 N3 A ? ? 1_555 B G 3 N1 A ? A C 16 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 16 N4 A ? ? 1_555 B G 3 O6 A ? A C 16 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 O2 A ? ? 1_555 B G 3 N2 A ? A C 16 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 17 O4 A ? ? 1_555 B U 2 N3 A ? A U 17 B U 2 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 18 N1 A ? ? 1_555 B C 1 N3 A ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 N2 A ? ? 1_555 B C 1 O2 A ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 O6 A ? ? 1_555 B C 1 N4 A ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 2 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 15 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 C _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 139 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 C _pdbx_validate_close_contact.dist 1.95 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 2 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 4 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 C _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 140 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 C _pdbx_validate_symm_contact.site_symmetry_2 2_665 _pdbx_validate_symm_contact.dist 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 2 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 15 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 C _pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 15 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 C _pdbx_validate_rmsd_bond.bond_value 1.657 _pdbx_validate_rmsd_bond.bond_target_value 1.593 _pdbx_validate_rmsd_bond.bond_deviation 0.064 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 3 ? A "C4'" A G 3 ? A "C3'" A G 3 ? A 97.06 104.00 -6.94 1.00 N 2 1 "C4'" A G 3 ? A "C3'" A G 3 ? A "C2'" A G 3 ? A 95.47 102.60 -7.13 1.00 N 3 1 "O4'" A G 3 ? A "C1'" A G 3 ? A N9 A G 3 ? A 101.30 108.20 -6.90 0.80 N 4 1 C8 A G 3 ? A N9 A G 3 ? A C4 A G 3 ? A 103.95 106.40 -2.45 0.40 N 5 1 "O5'" A C 4 ? A "C5'" A C 4 ? A "C4'" A C 4 ? A 104.56 109.40 -4.84 0.80 N 6 1 "C1'" A C 4 ? A "O4'" A C 4 ? A "C4'" A C 4 ? A 105.50 109.70 -4.20 0.70 N 7 1 C6 A C 4 ? A N1 A C 4 ? A C2 A C 4 ? A 117.74 120.30 -2.56 0.40 N 8 1 N3 A C 4 ? A C4 A C 4 ? A C5 A C 4 ? A 119.48 121.90 -2.42 0.40 N 9 1 "O4'" A U 5 ? A "C1'" A U 5 ? A N1 A U 5 ? A 103.06 108.20 -5.14 0.80 N 10 1 C5 A U 5 ? A C4 A U 5 ? A O4 A U 5 ? A 121.92 125.90 -3.98 0.60 N 11 1 C2 A G 6 ? A N3 A G 6 ? A C4 A G 6 ? A 108.18 111.90 -3.72 0.50 N 12 1 C2 A U 14 ? A N3 A U 14 ? A C4 A U 14 ? A 130.62 127.00 3.62 0.60 N 13 1 C5 A U 14 ? A C6 A U 14 ? A N1 A U 14 ? A 126.42 122.70 3.72 0.50 N 14 1 "O4'" B C 10 ? A "C1'" B C 10 ? A N1 B C 10 ? A 113.08 108.50 4.58 0.70 N 15 1 C2 B U 14 ? A N3 B U 14 ? A C4 B U 14 ? A 131.55 127.00 4.55 0.60 N 16 1 C5 B U 14 ? A C6 B U 14 ? A N1 B U 14 ? A 126.36 122.70 3.66 0.50 N 17 1 N1 B U 14 ? A C2 B U 14 ? A O2 B U 14 ? A 127.01 122.80 4.21 0.70 N 18 1 "C4'" B G 15 ? A "C3'" B G 15 ? A "C2'" B G 15 ? A 95.79 102.60 -6.81 1.00 N 19 1 "O4'" B G 15 ? A "C1'" B G 15 ? A N9 B G 15 ? A 103.00 108.20 -5.20 0.80 N 20 1 N3 B G 15 ? A C4 B G 15 ? A C5 B G 15 ? A 132.52 128.60 3.92 0.50 N 21 1 N3 B G 15 ? A C4 B G 15 ? A N9 B G 15 ? A 121.90 126.00 -4.10 0.60 N 22 1 "O5'" B C 16 ? A P B C 16 ? A OP2 B C 16 ? A 98.58 105.70 -7.12 0.90 N 23 1 C2 B C 16 ? A N3 B C 16 ? A C4 B C 16 ? A 125.93 119.90 6.03 0.50 N 24 1 C4 B C 16 ? A C5 B C 16 ? A C6 B C 16 ? A 113.71 117.40 -3.69 0.50 N 25 1 C5 B C 16 ? A C6 B C 16 ? A N1 B C 16 ? A 125.66 121.00 4.66 0.50 N 26 2 C6 A C 13 ? C N1 A C 13 ? C C2 A C 13 ? C 122.72 120.30 2.42 0.40 N 27 2 N1 A C 13 ? C C2 A C 13 ? C N3 A C 13 ? C 114.89 119.20 -4.31 0.70 N 28 2 C4 A C 13 ? C C5 A C 13 ? C C6 A C 13 ? C 114.38 117.40 -3.02 0.50 N 29 2 N3 B U 2 ? C C2 B U 2 ? C O2 B U 2 ? C 117.53 122.20 -4.67 0.70 N 30 2 "O4'" B G 3 ? C "C1'" B G 3 ? C N9 B G 3 ? C 103.28 108.20 -4.92 0.80 N 31 2 N1 B G 3 ? C C6 B G 3 ? C O6 B G 3 ? C 124.03 119.90 4.13 0.60 N 32 2 C5 B G 3 ? C C6 B G 3 ? C O6 B G 3 ? C 124.55 128.60 -4.05 0.60 N 33 2 C6 B C 4 ? C N1 B C 4 ? C C2 B C 4 ? C 117.90 120.30 -2.40 0.40 N 34 2 "O4'" B U 5 ? C "C1'" B U 5 ? C N1 B U 5 ? C 114.14 108.50 5.64 0.70 N 35 2 C2 B G 6 ? C N3 B G 6 ? C C4 B G 6 ? C 108.27 111.90 -3.63 0.50 N 36 2 "O4'" B G 15 ? C "C1'" B G 15 ? C N9 B G 15 ? C 103.05 108.20 -5.15 0.80 N 37 2 "O4'" B C 16 ? C "C1'" B C 16 ? C N1 B C 16 ? C 113.12 108.50 4.62 0.70 N 38 2 "O4'" B G 18 ? C "C1'" B G 18 ? C N9 B G 18 ? C 112.83 108.50 4.33 0.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 35 ? C HOH . 2 1 B HOH 23 ? D HOH . 3 1 B HOH 25 ? D HOH . 4 1 B HOH 31 ? D HOH . 5 2 A HOH 110 ? C HOH . 6 2 A HOH 113 ? C HOH . 7 2 A HOH 124 ? C HOH . 8 2 A HOH 127 ? C HOH . 9 2 A HOH 134 ? C HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -5.1270 17.1430 37.8710 .0174 -.0109 .0440 -.0576 .0346 .0419 .0853 6.2358 .8116 -.6834 -.2582 1.9160 .2780 -.4268 .1155 .3089 -.0593 .0414 .1959 -.3656 -.2186 'X-RAY DIFFRACTION' 2 ? refined -3.2100 16.6880 35.1270 .0716 -.0121 .0653 .0402 .0484 -.0780 3.2284 11.2457 5.0486 .8538 -3.9437 .5528 -.2607 -.7212 .4078 .6006 .3722 -.3632 .0660 -1.0109 -.1114 'X-RAY DIFFRACTION' 3 ? refined -1.2570 14.6770 32.0760 -.1435 -.2058 -.0115 .0314 -.0156 -.0217 8.6496 21.9246 3.2549 -11.9703 2.8987 -7.1576 -.0416 -.0493 .1981 .0362 .2162 .0748 -.0781 -.4224 -.1745 'X-RAY DIFFRACTION' 4 ? refined -.9490 11.1730 29.1340 -.1244 -.1632 -.0697 .0176 -.0014 -.0565 3.3815 44.8823 8.0168 2.7896 .7477 -17.6677 -.3288 -.0899 .1030 .4967 .5673 .4785 -.3803 -1.0700 -.2385 'X-RAY DIFFRACTION' 5 ? refined -1.4520 7.8940 26.4940 -.0674 -.2203 -.0362 -.0474 -.0152 .0168 4.3227 21.6477 1.5657 9.5071 -2.3275 -4.8843 .3604 -.1151 .0637 .0135 -.2171 .3889 .0523 -.0361 -.1433 'X-RAY DIFFRACTION' 6 ? refined -2.9530 5.5950 23.8420 -.0103 -.2121 .0307 -.0037 -.0423 -.0089 .1256 2.4735 5.0036 -.5517 -.0040 -.4799 .2710 .4166 -.3937 -.0014 .0456 -.1427 .4899 -.1734 -.3166 'X-RAY DIFFRACTION' 7 ? refined -5.8050 5.3080 20.8230 -.1209 -.0683 -.0044 .0347 -.0001 .0087 15.0274 5.8902 1.0640 6.6071 -2.6002 -2.4972 .0534 .4135 -.6314 -.0761 .1150 -.1289 -.1419 -.1736 -.1684 'X-RAY DIFFRACTION' 8 ? refined -8.5170 6.8320 18.4110 .0218 .2170 .0045 .0451 -.0393 .0741 21.5328 16.0591 7.0075 -10.8356 -11.9480 7.4455 .0127 -.4383 .0869 -.1543 .3092 .6183 -.9698 -.0247 -.3219 'X-RAY DIFFRACTION' 9 ? refined -10.0760 9.7070 16.0910 .1964 .0086 .0985 .0459 -.0453 .0978 10.7300 2.0198 2.5982 -.1675 2.1189 -2.1300 .1201 -.0288 -.1381 .5122 .6153 .3324 .2077 .1005 -.7354 'X-RAY DIFFRACTION' 10 ? refined -10.0380 13.0400 13.9140 .1645 -.0653 .1345 -.1299 .0079 .0948 7.8762 12.6972 2.9272 2.1224 4.7601 2.0638 .6257 -.1859 -.2898 .2624 .0654 .8043 .4080 -.2410 -.6911 'X-RAY DIFFRACTION' 11 ? refined -8.6010 16.0840 11.5930 .0211 -.0194 -.0192 -.0650 -.0054 .0709 24.1088 15.5599 12.2080 10.7010 15.1227 10.7862 .1609 -.5703 -.5117 -.2290 -.1191 .5822 .4328 -.7744 -.0417 'X-RAY DIFFRACTION' 12 ? refined -6.0730 17.4730 8.7910 -.0381 -.0450 -.0149 .0054 .0048 .0683 3.5720 2.0047 2.6448 -1.7604 -2.8704 .7944 -.0367 .5880 -.1791 .0954 .3550 .3052 -.1011 .0445 -.3183 'X-RAY DIFFRACTION' 13 ? refined -3.2300 16.9590 5.9810 -.0880 -.1225 .0034 -.0041 .0006 -.0032 1.4150 .5048 2.6062 -.3091 -1.8049 .7590 .2636 -.0773 -.0205 -.1285 .1959 .1249 .0888 -.1441 -.4596 'X-RAY DIFFRACTION' 14 ? refined -1.5860 14.7370 2.8670 -.0125 -.0766 .0089 .0250 -.0297 -.0313 10.1674 9.0432 4.5804 -9.1380 5.9214 -6.2914 .1388 .0262 -.1249 -.2552 .0737 .2192 .2458 -.0769 -.2125 'X-RAY DIFFRACTION' 15 ? refined -1.2540 11.4240 .2630 -.0348 -.1569 .0249 -.0288 -.0795 -.0415 5.1399 10.7444 8.1106 .5073 -.8740 -3.0641 -.1431 .1596 -.2832 -.1376 .2645 -.0033 .5095 -.5938 -.1214 'X-RAY DIFFRACTION' 16 ? refined -3.0360 8.8540 -1.9720 .0684 -.0642 .0559 -.0325 -.0904 -.0029 14.0624 23.9506 9.2033 6.5339 -9.2542 -12.3691 -.6463 .3203 -1.1699 -.9267 .8437 -.4620 .0893 -.9255 -.1973 'X-RAY DIFFRACTION' 17 ? refined -5.8480 7.5420 -4.4980 .2379 .1994 .0758 .0137 -.1382 -.0523 .9220 10.4488 5.1522 -2.2650 1.3447 .6451 .6097 .5309 -.2655 -.8435 .3596 .0129 -.5373 -1.0224 -.9692 'X-RAY DIFFRACTION' 18 ? refined -8.3140 7.2210 -7.0790 .0466 .1193 .0523 .0210 -.1388 -.0329 31.3412 13.2566 3.7903 -16.8754 -5.5462 1.8042 1.2826 .2840 -1.5743 -.2232 -.8458 -.2558 -1.1018 -1.2678 -.4367 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 1 A 1 ? 'X-RAY DIFFRACTION' ? 2 1 B 18 B 18 B 18 B 18 ? 'X-RAY DIFFRACTION' ? 3 2 A 2 A 2 A 2 A 2 ? 'X-RAY DIFFRACTION' ? 4 2 B 17 B 17 B 17 B 17 ? 'X-RAY DIFFRACTION' ? 5 3 A 3 A 3 A 3 A 3 ? 'X-RAY DIFFRACTION' ? 6 3 B 16 B 16 B 16 B 16 ? 'X-RAY DIFFRACTION' ? 7 4 A 4 A 4 A 4 A 4 ? 'X-RAY DIFFRACTION' ? 8 4 B 15 B 15 B 15 B 15 ? 'X-RAY DIFFRACTION' ? 9 5 A 5 A 5 A 5 A 5 ? 'X-RAY DIFFRACTION' ? 10 5 B 14 B 14 B 14 B 14 ? 'X-RAY DIFFRACTION' ? 11 6 A 6 A 6 A 6 A 6 ? 'X-RAY DIFFRACTION' ? 12 6 B 13 B 13 B 13 B 13 ? 'X-RAY DIFFRACTION' ? 13 7 A 7 A 7 A 7 A 7 ? 'X-RAY DIFFRACTION' ? 14 7 B 12 B 12 B 12 B 12 ? 'X-RAY DIFFRACTION' ? 15 8 A 8 A 8 A 8 A 8 ? 'X-RAY DIFFRACTION' ? 16 8 B 11 B 11 B 11 B 11 ? 'X-RAY DIFFRACTION' ? 17 9 A 9 A 9 A 9 A 9 ? 'X-RAY DIFFRACTION' ? 18 9 B 10 B 10 B 10 B 10 ? 'X-RAY DIFFRACTION' ? 19 10 A 10 A 10 A 10 A 10 ? 'X-RAY DIFFRACTION' ? 20 10 B 9 B 9 B 9 B 9 ? 'X-RAY DIFFRACTION' ? 21 11 A 11 A 11 A 11 A 11 ? 'X-RAY DIFFRACTION' ? 22 11 B 8 B 8 B 8 B 8 ? 'X-RAY DIFFRACTION' ? 23 12 A 12 A 12 A 12 A 12 ? 'X-RAY DIFFRACTION' ? 24 12 B 7 B 7 B 7 B 7 ? 'X-RAY DIFFRACTION' ? 25 13 A 13 A 13 A 13 A 13 ? 'X-RAY DIFFRACTION' ? 26 13 B 6 B 6 B 6 B 6 ? 'X-RAY DIFFRACTION' ? 27 14 A 14 A 14 A 14 A 14 ? 'X-RAY DIFFRACTION' ? 28 14 B 5 B 5 B 5 B 5 ? 'X-RAY DIFFRACTION' ? 29 15 A 15 A 15 A 15 A 15 ? 'X-RAY DIFFRACTION' ? 30 15 B 4 B 4 B 4 B 4 ? 'X-RAY DIFFRACTION' ? 31 16 A 16 A 16 A 16 A 16 ? 'X-RAY DIFFRACTION' ? 32 16 B 3 B 3 B 3 B 3 ? 'X-RAY DIFFRACTION' ? 33 17 A 17 A 17 A 17 A 17 ? 'X-RAY DIFFRACTION' ? 34 17 B 2 B 2 B 2 B 2 ? 'X-RAY DIFFRACTION' ? 35 18 A 18 A 18 A 18 A 18 ? 'X-RAY DIFFRACTION' ? 36 18 B 1 B 1 B 1 B 1 ? 'X-RAY DIFFRACTION' ? # _pdbx_database_remark.id 7 _pdbx_database_remark.text ; TLS DETAILS NUMBER OF TLS GROUPS : 18 TLS GROUP : 19 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 1 A 1 RESIDUE RANGE : B 18 B 18 ORIGIN FOR THE GROUP (A): -8.8200 7.1830 18.5870 T TENSOR T11: -0.0519 T22: -0.0267 T33: 0.0385 T12: 0.0394 T13: -0.0319 T23: 0.0779 L TENSOR L11: 14.1366 L22: 11.7182 L33: 4.2157 L12: -1.4888 L13: -6.4616 L23: 1.1182 S TENSOR S11: -0.4483 S12: -1.2562 S13: -0.2132 S21: -0.5346 S22: 0.7290 S23: 0.6125 S31: -0.0260 S32: 0.5428 S33: -0.2808 TLS GROUP : 20 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 2 A 2 RESIDUE RANGE : B 17 B 17 ORIGIN FOR THE GROUP (A): -9.8510 10.0160 16.1620 T TENSOR T11: 0.0618 T22: 0.0150 T33: 0.0336 T12: 0.0005 T13: -0.0092 T23: 0.1532 L TENSOR L11: 15.9283 L22: 27.8775 L33: 9.9726 L12: -11.0879 L13: -9.0205 L23: 14.3390 S TENSOR S11: 0.3958 S12: -0.4326 S13: -0.3760 S21: -0.6098 S22: 0.1489 S23: 0.6202 S31: -0.1389 S32: -0.2975 S33: -0.5447 TLS GROUP : 21 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 3 A 3 RESIDUE RANGE : B 16 B 16 ORIGIN FOR THE GROUP (A): -10.1910 12.9460 13.7150 T TENSOR T11: -0.0179 T22: -0.0258 T33: 0.0665 T12: -0.0341 T13: 0.0043 T23: 0.0581 L TENSOR L11: 8.0179 L22: 4.2885 L33: 13.7466 L12: 1.9119 L13: 2.0030 L23: 2.7726 S TENSOR S11: 0.2204 S12: -0.1382 S13: -0.3021 S21: 0.0477 S22: -0.0126 S23: 0.4627 S31: 0.9454 S32: -0.3193 S33: -0.2078 TLS GROUP : 22 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 4 A 4 RESIDUE RANGE : B 15 B 15 ORIGIN FOR THE GROUP (A): -8.6980 15.8100 11.4540 T TENSOR T11: -0.1034 T22: -0.1096 T33: 0.0163 T12: -0.0867 T13: -0.0150 T23: 0.0586 L TENSOR L11: 14.2712 L22: 9.1272 L33: 13.0762 L12: 8.1245 L13: 8.3756 L23: 4.4191 S TENSOR S11: -0.0699 S12: 0.2076 S13: -0.4628 S21: -0.0698 S22: 0.3285 S23: 0.1541 S31: 0.6432 S32: 0.0607 S33: -0.2587 TLS GROUP : 23 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 5 A 5 RESIDUE RANGE : B 14 B 14 ORIGIN FOR THE GROUP (A): -5.9030 17.0960 8.8580 T TENSOR T11: -0.1003 T22: -0.0312 T33: 0.0165 T12: -0.0099 T13: -0.0097 T23: 0.0419 L TENSOR L11: 10.4040 L22: 0.4045 L33: 2.0592 L12: -0.6052 L13: 2.1545 L23: -0.8971 S TENSOR S11: 0.0810 S12: 0.1737 S13: -0.0476 S21: 0.0359 S22: 0.1777 S23: 0.1903 S31: 0.2348 S32: 0.0430 S33: -0.2587 TLS GROUP : 24 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 6 A 6 RESIDUE RANGE : B 13 B 13 ORIGIN FOR THE GROUP (A): -3.2100 16.9620 5.8750 T TENSOR T11: -0.1161 T22: -0.0992 T33: -0.0105 T12: -0.0165 T13: -0.0078 T23: -0.0219 L TENSOR L11: 2.4593 L22: 5.5141 L33: 3.9213 L12: -3.0189 L13: -1.5248 L23: -0.4479 S TENSOR S11: -0.0587 S12: -0.0207 S13: -0.1416 S21: 0.2278 S22: 0.1527 S23: 0.0541 S31: 0.0852 S32: -0.1081 S33: -0.0940 TLS GROUP : 25 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 7 A 7 RESIDUE RANGE : B 12 B 12 ORIGIN FOR THE GROUP (A): -1.5120 14.7440 3.2050 T TENSOR T11: -0.0158 T22: -0.0849 T33: -0.0189 T12: -0.0105 T13: -0.0475 T23: -0.0454 L TENSOR L11: 7.8751 L22: 6.5666 L33: 3.6804 L12: -6.7783 L13: 2.4894 L23: -3.5984 S TENSOR S11: 0.0417 S12: -0.0303 S13: -0.1646 S21: -0.0313 S22: 0.2035 S23: 0.1687 S31: 0.0968 S32: 0.0260 S33: -0.2452 TLS GROUP : 26 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 8 A 8 RESIDUE RANGE : B 11 B 11 ORIGIN FOR THE GROUP (A): -1.4640 11.9480 0.4300 T TENSOR T11: 0.0450 T22: -0.0649 T33: 0.0035 T12: -0.0415 T13: -0.0712 T23: -0.0422 L TENSOR L11: 4.4328 L22: 13.0940 L33: 12.9403 L12: -2.5463 L13: 0.6691 L23: -12.6048 S TENSOR S11: 0.3532 S12: -0.0516 S13: -0.2391 S21: -0.4567 S22: -0.0446 S23: 0.2498 S31: 1.0755 S32: 0.2924 S33: -0.3085 TLS GROUP : 27 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 9 A 9 RESIDUE RANGE : B 10 B 10 ORIGIN FOR THE GROUP (A): -3.4650 9.2410 -1.7830 T TENSOR T11: 0.0051 T22: -0.0719 T33: 0.0921 T12: -0.0603 T13: -0.0885 T23: -0.0627 L TENSOR L11: 6.9740 L22: 14.3431 L33: 1.2275 L12: -2.9973 L13: 2.5501 L23: -3.0588 S TENSOR S11: 0.3202 S12: 0.1617 S13: -0.6944 S21: 0.4586 S22: 0.3253 S23: -0.0135 S31: 0.2834 S32: 0.3436 S33: -0.6455 TLS GROUP : 28 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 10 A 10 RESIDUE RANGE : B 9 B 9 ORIGIN FOR THE GROUP (A): -6.1240 7.6550 -4.1420 T TENSOR T11: -0.0803 T22: 0.0836 T33: 0.0494 T12: -0.0595 T13: -0.1002 T23: 0.0253 L TENSOR L11: 7.1459 L22: 9.2674 L33: 0.9937 L12: 0.0008 L13: 1.4810 L23: 2.5229 S TENSOR S11: 0.3680 S12: -0.1839 S13: -0.6079 S21: 0.3513 S22: -0.2671 S23: -0.3854 S31: -0.3182 S32: 0.5033 S33: -0.1009 TLS GROUP : 29 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 11 A 11 RESIDUE RANGE : B 8 B 8 ORIGIN FOR THE GROUP (A): -9.2880 7.5890 -6.5580 T TENSOR T11: -0.1326 T22: 0.0042 T33: 0.0594 T12: 0.0242 T13: -0.0717 T23: -0.0629 L TENSOR L11: 7.4564 L22: 11.8118 L33: 3.0967 L12: -3.3750 L13: -0.6497 L23: -2.0931 S TENSOR S11: 0.7084 S12: 0.5031 S13: 0.1893 S21: -0.1568 S22: -0.4749 S23: -0.9273 S31: -0.2426 S32: 0.6932 S33: -0.2335 TLS GROUP : 30 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 12 A 12 RESIDUE RANGE : B 7 B 7 ORIGIN FOR THE GROUP (A): -11.9940 8.9350 -8.9040 T TENSOR T11: -0.1174 T22: -0.0779 T33: 0.0132 T12: 0.0421 T13: -0.0327 T23: -0.0281 L TENSOR L11: 1.4856 L22: 12.4331 L33: 0.6545 L12: 0.0722 L13: -0.4493 L23: 0.5355 S TENSOR S11: -0.0167 S12: -0.1062 S13: -0.0815 S21: 0.4470 S22: 0.3990 S23: 0.1298 S31: -0.0564 S32: 0.1336 S33: -0.3823 TLS GROUP : 31 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 13 A 13 RESIDUE RANGE : B 6 B 6 ORIGIN FOR THE GROUP (A): -13.1080 11.3590 -12.0290 T TENSOR T11: -0.1811 T22: -0.1171 T33: -0.0058 T12: -0.0654 T13: 0.0121 T23: -0.0111 L TENSOR L11: 5.8744 L22: 5.7272 L33: 3.3770 L12: -0.7151 L13: 1.4720 L23: 2.8566 S TENSOR S11: 0.2693 S12: -0.0225 S13: -0.0459 S21: 0.5660 S22: -0.0530 S23: 0.0215 S31: 0.2608 S32: -0.2357 S33: -0.2163 TLS GROUP : 32 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 14 A 14 RESIDUE RANGE : B 5 B 5 ORIGIN FOR THE GROUP (A): -11.6110 13.7960 -14.6430 T TENSOR T11: 0.0377 T22: 0.0045 T33: 0.0462 T12: -0.0653 T13: -0.0615 T23: 0.0191 L TENSOR L11: 23.2118 L22: 24.3718 L33: 6.2589 L12: 22.3271 L13: 11.1429 L23: 12.3412 S TENSOR S11: 0.2578 S12: 0.5855 S13: -0.0770 S21: 0.9721 S22: 0.1334 S23: 0.4012 S31: 0.3259 S32: 1.0778 S33: -0.3912 TLS GROUP : 33 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 15 A 15 RESIDUE RANGE : B 4 B 4 ORIGIN FOR THE GROUP (A): -9.4020 16.0510 -17.2890 T TENSOR T11: -0.1586 T22: -0.1379 T33: -0.0735 T12: 0.0012 T13: 0.0218 T23: 0.0441 L TENSOR L11: 18.4991 L22: 9.4699 L33: 7.8384 L12: 9.9666 L13: 9.9360 L23: 6.1890 S TENSOR S11: 0.3094 S12: 0.7188 S13: -0.2308 S21: 0.4228 S22: -0.0059 S23: -0.0318 S31: 0.4375 S32: 0.7723 S33: -0.3035 TLS GROUP : 34 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 16 A 16 RESIDUE RANGE : B 3 B 3 ORIGIN FOR THE GROUP (A): -6.1200 17.5310 -19.9960 T TENSOR T11: -0.1111 T22: -0.0378 T33: -0.0072 T12: 0.0165 T13: 0.0025 T23: 0.0168 L TENSOR L11: 31.0036 L22: 0.2921 L33: 1.0800 L12: 2.0370 L13: 5.7447 L23: 0.3278 S TENSOR S11: 0.0224 S12: 0.2153 S13: -0.2586 S21: -0.0283 S22: 0.2254 S23: -0.0834 S31: 0.4199 S32: -0.0954 S33: -0.2478 TLS GROUP : 35 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 17 A 17 RESIDUE RANGE : B 2 B 2 ORIGIN FOR THE GROUP (A): -3.3970 16.9530 -23.2680 T TENSOR T11: -0.0772 T22: 0.0305 T33: 0.0662 T12: 0.0132 T13: 0.0301 T23: 0.0003 L TENSOR L11: 6.1503 L22: 4.8385 L33: 0.4192 L12: -2.6607 L13: -1.6028 L23: 0.7660 S TENSOR S11: -0.2331 S12: -0.0752 S13: 0.6094 S21: 0.1883 S22: 0.5087 S23: -0.4581 S31: 0.1606 S32: -0.5986 S33: -0.2756 TLS GROUP : 36 NUMBER OF COMPONENTS GROUP : 2 COMPONENTS C SSSEQI TO C SSSEQI RESIDUE RANGE : A 18 A 18 RESIDUE RANGE : B 1 B 1 ORIGIN FOR THE GROUP (A): -2.1650 15.3180 -26.1940 T TENSOR T11: -0.0191 T22: -0.0692 T33: 0.0706 T12: -0.0071 T13: -0.0324 T23: -0.0525 L TENSOR L11: 5.0650 L22: 1.0127 L33: 4.7334 L12: 1.6469 L13: -2.7360 L23: -2.1360 S TENSOR S11: 0.3081 S12: -0.0535 S13: 0.3060 S21: -0.5620 S22: 0.1701 S23: 0.0099 S31: 0.1114 S32: -0.2038 S33: -0.4782 ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 U OP3 O N N 77 U P P N N 78 U OP1 O N N 79 U OP2 O N N 80 U "O5'" O N N 81 U "C5'" C N N 82 U "C4'" C N R 83 U "O4'" O N N 84 U "C3'" C N S 85 U "O3'" O N N 86 U "C2'" C N R 87 U "O2'" O N N 88 U "C1'" C N R 89 U N1 N N N 90 U C2 C N N 91 U O2 O N N 92 U N3 N N N 93 U C4 C N N 94 U O4 O N N 95 U C5 C N N 96 U C6 C N N 97 U HOP3 H N N 98 U HOP2 H N N 99 U "H5'" H N N 100 U "H5''" H N N 101 U "H4'" H N N 102 U "H3'" H N N 103 U "HO3'" H N N 104 U "H2'" H N N 105 U "HO2'" H N N 106 U "H1'" H N N 107 U H3 H N N 108 U H5 H N N 109 U H6 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 U OP3 P sing N N 79 U OP3 HOP3 sing N N 80 U P OP1 doub N N 81 U P OP2 sing N N 82 U P "O5'" sing N N 83 U OP2 HOP2 sing N N 84 U "O5'" "C5'" sing N N 85 U "C5'" "C4'" sing N N 86 U "C5'" "H5'" sing N N 87 U "C5'" "H5''" sing N N 88 U "C4'" "O4'" sing N N 89 U "C4'" "C3'" sing N N 90 U "C4'" "H4'" sing N N 91 U "O4'" "C1'" sing N N 92 U "C3'" "O3'" sing N N 93 U "C3'" "C2'" sing N N 94 U "C3'" "H3'" sing N N 95 U "O3'" "HO3'" sing N N 96 U "C2'" "O2'" sing N N 97 U "C2'" "C1'" sing N N 98 U "C2'" "H2'" sing N N 99 U "O2'" "HO2'" sing N N 100 U "C1'" N1 sing N N 101 U "C1'" "H1'" sing N N 102 U N1 C2 sing N N 103 U N1 C6 sing N N 104 U C2 O2 doub N N 105 U C2 N3 sing N N 106 U N3 C4 sing N N 107 U N3 H3 sing N N 108 U C4 O4 doub N N 109 U C4 C5 sing N N 110 U C5 C6 doub N N 111 U C5 H5 sing N N 112 U C6 H6 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZEV 'double helix' 1ZEV 'a-form double helix' 1ZEV 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 18 1_555 0.179 -0.173 0.162 7.575 -10.019 1.516 1 A_C1:G18_B A 1 ? B 18 ? 19 1 1 A U 2 1_555 B U 17 1_555 -2.462 -1.789 -0.029 -0.115 -17.902 4.759 2 A_U2:U17_B A 2 ? B 17 ? 16 1 1 A G 3 1_555 B C 16 1_555 -0.268 -0.177 -0.114 -6.585 -6.827 -0.836 3 A_G3:C16_B A 3 ? B 16 ? 19 1 1 A C 4 1_555 B G 15 1_555 0.251 -0.039 0.226 1.823 -1.213 2.218 4 A_C4:G15_B A 4 ? B 15 ? 19 1 1 A G 6 1_555 B C 13 1_555 -0.572 -0.093 0.081 2.319 -11.947 5.627 5 A_G6:C13_B A 6 ? B 13 ? 19 1 1 A C 7 1_555 B G 12 1_555 0.625 -0.167 -0.186 12.615 -18.008 1.763 6 A_C7:G12_B A 7 ? B 12 ? 19 1 1 A G 9 1_555 B C 10 1_555 -1.031 -0.467 -0.001 0.160 -16.969 7.743 7 A_G9:C10_B A 9 ? B 10 ? 19 1 1 A C 10 1_555 B G 9 1_555 0.292 -0.147 -0.133 2.741 -13.748 0.072 8 A_C10:G9_B A 10 ? B 9 ? 19 1 1 A U 11 1_555 B U 8 1_555 -0.509 -1.714 -0.087 1.161 -15.409 0.097 9 A_U11:U8_B A 11 ? B 8 ? ? ? 1 A G 12 1_555 B C 7 1_555 -1.061 -0.322 -0.097 2.272 -8.241 4.126 10 A_G12:C7_B A 12 ? B 7 ? 19 1 1 A C 13 1_555 B G 6 1_555 0.266 -0.206 0.095 -11.515 -10.857 0.686 11 A_C13:G6_B A 13 ? B 6 ? 19 1 1 A G 15 1_555 B C 4 1_555 -0.324 -0.197 -0.240 -3.944 -8.890 -0.768 12 A_G15:C4_B A 15 ? B 4 ? 19 1 1 A C 16 1_555 B G 3 1_555 0.223 -0.319 0.238 0.315 -19.375 0.643 13 A_C16:G3_B A 16 ? B 3 ? 19 1 1 A U 17 1_555 B U 2 1_555 -1.165 -0.993 -0.112 3.818 -14.398 -13.928 14 A_U17:U2_B A 17 ? B 2 ? ? ? 1 A G 18 1_555 B C 1 1_555 -1.027 -0.237 0.271 -3.083 -4.360 3.947 15 A_G18:C1_B A 18 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 18 1_555 A U 2 1_555 B U 17 1_555 0.169 -1.360 2.991 0.796 12.492 21.572 -6.180 -0.198 1.927 30.309 -1.931 24.904 1 AA_C1U2:U17G18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A U 2 1_555 B U 17 1_555 A G 3 1_555 B C 16 1_555 -0.164 -1.367 3.608 -1.384 13.780 40.718 -3.295 0.081 3.016 19.147 1.923 42.913 2 AA_U2G3:C16U17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A G 3 1_555 B C 16 1_555 A C 4 1_555 B G 15 1_555 0.637 -2.115 3.324 -2.556 3.477 28.495 -5.004 -1.833 2.983 7.013 5.155 28.813 3 AA_G3C4:G15C16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A C 4 1_555 B G 15 1_555 A G 6 1_555 B C 13 1_555 -1.003 -3.642 5.812 -6.440 15.526 58.671 -4.844 0.473 4.875 15.501 6.430 60.825 4 AA_C4G6:C13G15_BB A 4 ? B 15 ? A 6 ? B 13 ? 1 A G 6 1_555 B C 13 1_555 A C 7 1_555 B G 12 1_555 -0.204 -1.284 3.206 1.862 6.167 36.932 -2.765 0.549 2.948 9.644 -2.912 37.470 5 AA_G6C7:G12C13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A C 7 1_555 B G 12 1_555 A G 9 1_555 B C 10 1_555 0.376 -3.197 6.042 -0.288 26.063 60.607 -4.768 -0.368 4.485 24.640 0.272 65.481 6 AA_C7G9:C10G12_BB A 7 ? B 12 ? A 9 ? B 10 ? 1 A G 9 1_555 B C 10 1_555 A C 10 1_555 B G 9 1_555 -0.562 -0.999 3.217 1.669 0.446 37.107 -1.626 1.100 3.178 0.700 -2.622 37.146 7 AA_G9C10:G9C10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A C 10 1_555 B G 9 1_555 A U 11 1_555 B U 8 1_555 -0.148 -2.028 3.301 -5.907 14.953 32.100 -5.203 -0.512 2.168 25.167 9.941 35.807 8 AA_C10U11:U8G9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A U 11 1_555 B U 8 1_555 A G 12 1_555 B C 7 1_555 0.027 -1.019 3.167 -3.328 10.295 28.155 -3.887 -0.675 2.621 20.240 6.544 30.123 9 AA_U11G12:C7U8_BB A 11 ? B 8 ? A 12 ? B 7 ? 1 A G 12 1_555 B C 7 1_555 A C 13 1_555 B G 6 1_555 -0.172 -1.502 3.395 -0.633 6.606 39.015 -2.997 0.180 3.112 9.805 0.939 39.554 10 AA_G12C13:G6C7_BB A 12 ? B 7 ? A 13 ? B 6 ? 1 A C 13 1_555 B G 6 1_555 A G 15 1_555 B C 4 1_555 0.120 -3.353 6.032 3.183 27.314 61.612 -4.841 0.101 4.375 25.366 -2.956 66.915 11 AA_C13G15:C4G6_BB A 13 ? B 6 ? A 15 ? B 4 ? 1 A G 15 1_555 B C 4 1_555 A C 16 1_555 B G 3 1_555 0.248 -1.649 3.194 -3.462 0.469 35.506 -2.758 -0.890 3.135 0.767 5.660 35.672 12 AA_G15C16:G3C4_BB A 15 ? B 4 ? A 16 ? B 3 ? 1 A C 16 1_555 B G 3 1_555 A U 17 1_555 B U 2 1_555 -0.038 -1.725 2.871 2.320 16.107 25.977 -5.614 0.409 1.551 32.131 -4.629 30.579 13 AA_C16U17:U2G3_BB A 16 ? B 3 ? A 17 ? B 2 ? 1 A U 17 1_555 B U 2 1_555 A G 18 1_555 B C 1 1_555 0.585 -1.440 3.197 -3.812 7.428 37.255 -3.074 -1.343 2.798 11.451 5.877 38.146 14 AA_U17G18:C1U2_BB A 17 ? B 2 ? A 18 ? B 1 ? # _atom_sites.entry_id 1ZEV _atom_sites.fract_transf_matrix[1][1] 0.025574 _atom_sites.fract_transf_matrix[1][2] 0.014765 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029530 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007078 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_