data_1ZFA # _entry.id 1ZFA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZFA pdb_00001zfa 10.2210/pdb1zfa/pdb NDB AD0052 ? ? RCSB RCSB032653 ? ? WWPDB D_1000032653 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1P4Y . unspecified PDB 1P4Z . unspecified PDB 1DCW . unspecified PDB 1DCV . unspecified PDB 1ZEW . unspecified PDB 1ZEX . unspecified PDB 1ZEY . unspecified PDB 1ZEZ . unspecified PDB 1ZF0 . unspecified PDB 1ZF1 . unspecified PDB 1ZF2 . unspecified PDB 1ZF3 . unspecified PDB 1ZF4 . unspecified PDB 1ZF5 . unspecified PDB 1ZF6 . unspecified PDB 1ZF7 . unspecified PDB 1ZF8 . unspecified PDB 1ZF9 . unspecified PDB 1ZFB . unspecified PDB 1ZFC . unspecified PDB 1ZFE . unspecified PDB 1ZFF . unspecified PDB 1ZFG . unspecified PDB 1ZFH . unspecified PDB 1ZFM . unspecified # _pdbx_database_status.entry_id 1ZFA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-04-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hays, F.A.' 1 'Teegarden, A.T.' 2 'Jones, Z.J.R.' 3 'Harms, M.' 4 'Raup, D.' 5 'Watson, J.' 6 'Cavaliere, E.' 7 'Ho, P.S.' 8 # _citation.id primary _citation.title 'How sequence defines structure: a crystallographic map of DNA structure and conformation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 7157 _citation.page_last 7162 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15870206 _citation.pdbx_database_id_DOI 10.1073/pnas.0409455102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hays, F.A.' 1 ? primary 'Teegarden, A.' 2 ? primary 'Jones, Z.J.' 3 ? primary 'Harms, M.' 4 ? primary 'Raup, D.' 5 ? primary 'Watson, J.' 6 ? primary 'Cavaliere, E.' 7 ? primary 'Ho, P.S.' 8 ? # _cell.entry_id 1ZFA _cell.length_a 23.930 _cell.length_b 44.620 _cell.length_c 46.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZFA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3'" 3045.992 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 130 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DT)(DC)(DC)(DG)(DG)(DA)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCTCCGGAGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DA n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'-TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN. ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ZFA _struct_ref.pdbx_db_accession 1ZFA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZFA A 1 ? 10 ? 1ZFA 1 ? 10 ? 1 10 2 1 1ZFA B 1 ? 10 ? 1ZFA 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.entry_id 1ZFA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Na Cacodylate' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 Spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'Na Cacodylate' ? ? ? 1 7 2 CaCl2 ? ? ? 1 8 2 MPD ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-05-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.542 # _reflns.entry_id 1ZFA _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 99.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 8318 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.5000 _reflns.B_iso_Wilson_estimate 4.1 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.233 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZFA _refine.ls_number_reflns_obs 7429 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 45057.85 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.23 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.3 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.600 _refine.ls_number_reflns_R_free 788 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 6.6 _refine.aniso_B[1][1] -0.30900 _refine.aniso_B[2][2] 0.37800 _refine.aniso_B[3][3] -0.06900 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.273898 _refine.solvent_model_param_bsol 23.6038 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'STRUCTURE HAS NOT BEEN REFINED TO ITS LOWEST R AND RFREE VALUES. REFER TO CITATION ABOVE FOR' _refine.pdbx_starting_model 'pdb entry 1ZF9' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZFA _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 538 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 19.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 3.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 29.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 3.19 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.213 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.317 0.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.978 0.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.507 0.000 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.56 _refine_ls_shell.d_res_low 1.66 _refine_ls_shell.number_reflns_R_work 1060 _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.percent_reflns_obs 96.5 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 9.7 _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:DNA-RNA_REP.PARAM CNS_TOPPAR:DNA-RNA.TOP 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:WATER_REP.PARAM CNS_TOPPAR:DNA-RNA.LINK 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ION.PARAM CNS_TOPPAR:WATER.TOP 'X-RAY DIFFRACTION' 4 ? CNS_TOPPAR:ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1ZFA _struct.title 'GGA Duplex A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Crystallographic Screen, DNA Structure, Holliday Junction, Molecular Structure, DNA' _struct_keywords.entry_id 1ZFA _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 21 A HOH 34 1_555 ? ? ? ? ? ? ? 2.235 ? ? metalc2 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 21 A HOH 83 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc3 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 27 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc4 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 38 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc5 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 40 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc6 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 55 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc7 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 65 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc8 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 22 B HOH 127 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc9 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 23 B HOH 68 1_555 ? ? ? ? ? ? ? 2.991 ? ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 23 B HOH 73 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 23 B HOH 141 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc12 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 24 B HOH 36 1_555 ? ? ? ? ? ? ? 2.434 ? ? metalc13 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 24 B HOH 82 1_555 ? ? ? ? ? ? ? 2.723 ? ? metalc14 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 24 B HOH 142 1_555 ? ? ? ? ? ? ? 2.322 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 21 ? 3 'BINDING SITE FOR RESIDUE NA A 21' AC2 Software B NA 23 ? 4 'BINDING SITE FOR RESIDUE NA B 23' AC3 Software B NA 24 ? 4 'BINDING SITE FOR RESIDUE NA B 24' AC4 Software B CA 22 ? 6 'BINDING SITE FOR RESIDUE CA B 22' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH G . ? HOH A 34 . ? 1_555 ? 2 AC1 3 HOH G . ? HOH A 83 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 116 . ? 1_555 ? 4 AC2 4 HOH G . ? HOH A 49 . ? 3_656 ? 5 AC2 4 HOH H . ? HOH B 68 . ? 1_555 ? 6 AC2 4 HOH H . ? HOH B 73 . ? 1_555 ? 7 AC2 4 HOH H . ? HOH B 141 . ? 1_555 ? 8 AC3 4 HOH H . ? HOH B 36 . ? 1_555 ? 9 AC3 4 HOH H . ? HOH B 82 . ? 1_555 ? 10 AC3 4 HOH H . ? HOH B 142 . ? 1_555 ? 11 AC3 4 HOH H . ? HOH B 144 . ? 1_555 ? 12 AC4 6 HOH H . ? HOH B 27 . ? 1_555 ? 13 AC4 6 HOH H . ? HOH B 38 . ? 1_555 ? 14 AC4 6 HOH H . ? HOH B 40 . ? 1_555 ? 15 AC4 6 HOH H . ? HOH B 55 . ? 1_555 ? 16 AC4 6 HOH H . ? HOH B 65 . ? 1_555 ? 17 AC4 6 HOH H . ? HOH B 127 . ? 1_555 ? # _atom_sites.entry_id 1ZFA _atom_sites.fract_transf_matrix[1][1] 0.041789 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022411 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021377 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DT 3 13 13 DT T B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DC 5 15 15 DC C B . n B 1 6 DG 6 16 16 DG G B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DA 8 18 18 DA A B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 21 21 NA NA A . D 2 NA 1 23 23 NA NA B . E 2 NA 1 24 24 NA NA B . F 3 CA 1 22 22 CA CA B . G 4 HOH 1 25 25 HOH HOH A . G 4 HOH 2 28 28 HOH HOH A . G 4 HOH 3 34 34 HOH HOH A . G 4 HOH 4 37 37 HOH HOH A . G 4 HOH 5 42 42 HOH HOH A . G 4 HOH 6 44 44 HOH HOH A . G 4 HOH 7 45 45 HOH HOH A . G 4 HOH 8 48 48 HOH HOH A . G 4 HOH 9 49 49 HOH HOH A . G 4 HOH 10 50 50 HOH HOH A . G 4 HOH 11 51 51 HOH HOH A . G 4 HOH 12 52 52 HOH HOH A . G 4 HOH 13 57 57 HOH HOH A . G 4 HOH 14 58 58 HOH HOH A . G 4 HOH 15 59 59 HOH HOH A . G 4 HOH 16 60 60 HOH HOH A . G 4 HOH 17 67 67 HOH HOH A . G 4 HOH 18 69 69 HOH HOH A . G 4 HOH 19 70 70 HOH HOH A . G 4 HOH 20 75 75 HOH HOH A . G 4 HOH 21 79 79 HOH HOH A . G 4 HOH 22 80 80 HOH HOH A . G 4 HOH 23 83 83 HOH HOH A . G 4 HOH 24 84 84 HOH HOH A . G 4 HOH 25 85 85 HOH HOH A . G 4 HOH 26 87 87 HOH HOH A . G 4 HOH 27 90 90 HOH HOH A . G 4 HOH 28 111 111 HOH HOH A . G 4 HOH 29 113 113 HOH HOH A . G 4 HOH 30 114 114 HOH HOH A . G 4 HOH 31 115 115 HOH HOH A . G 4 HOH 32 116 116 HOH HOH A . G 4 HOH 33 120 120 HOH HOH A . G 4 HOH 34 121 121 HOH HOH A . G 4 HOH 35 124 124 HOH HOH A . G 4 HOH 36 125 125 HOH HOH A . G 4 HOH 37 126 126 HOH HOH A . G 4 HOH 38 128 128 HOH HOH A . G 4 HOH 39 132 132 HOH HOH A . G 4 HOH 40 133 133 HOH HOH A . G 4 HOH 41 134 134 HOH HOH A . G 4 HOH 42 137 137 HOH HOH A . G 4 HOH 43 139 139 HOH HOH A . G 4 HOH 44 143 143 HOH HOH A . G 4 HOH 45 145 145 HOH HOH A . G 4 HOH 46 146 146 HOH HOH A . G 4 HOH 47 147 147 HOH HOH A . G 4 HOH 48 148 148 HOH HOH A . G 4 HOH 49 149 149 HOH HOH A . G 4 HOH 50 151 151 HOH HOH A . G 4 HOH 51 152 152 HOH HOH A . G 4 HOH 52 153 153 HOH HOH A . G 4 HOH 53 161 161 HOH HOH A . G 4 HOH 54 163 163 HOH HOH A . G 4 HOH 55 164 164 HOH HOH A . G 4 HOH 56 165 165 HOH HOH A . H 4 HOH 1 26 26 HOH HOH B . H 4 HOH 2 27 27 HOH HOH B . H 4 HOH 3 29 29 HOH HOH B . H 4 HOH 4 30 30 HOH HOH B . H 4 HOH 5 31 31 HOH HOH B . H 4 HOH 6 32 32 HOH HOH B . H 4 HOH 7 35 35 HOH HOH B . H 4 HOH 8 36 36 HOH HOH B . H 4 HOH 9 38 38 HOH HOH B . H 4 HOH 10 39 39 HOH HOH B . H 4 HOH 11 40 40 HOH HOH B . H 4 HOH 12 41 41 HOH HOH B . H 4 HOH 13 43 43 HOH HOH B . H 4 HOH 14 46 46 HOH HOH B . H 4 HOH 15 47 47 HOH HOH B . H 4 HOH 16 53 53 HOH HOH B . H 4 HOH 17 54 54 HOH HOH B . H 4 HOH 18 55 55 HOH HOH B . H 4 HOH 19 56 56 HOH HOH B . H 4 HOH 20 61 61 HOH HOH B . H 4 HOH 21 62 62 HOH HOH B . H 4 HOH 22 63 63 HOH HOH B . H 4 HOH 23 64 64 HOH HOH B . H 4 HOH 24 65 65 HOH HOH B . H 4 HOH 25 66 66 HOH HOH B . H 4 HOH 26 68 68 HOH HOH B . H 4 HOH 27 71 71 HOH HOH B . H 4 HOH 28 72 72 HOH HOH B . H 4 HOH 29 73 73 HOH HOH B . H 4 HOH 30 74 74 HOH HOH B . H 4 HOH 31 76 76 HOH HOH B . H 4 HOH 32 77 77 HOH HOH B . H 4 HOH 33 78 78 HOH HOH B . H 4 HOH 34 81 81 HOH HOH B . H 4 HOH 35 82 82 HOH HOH B . H 4 HOH 36 86 86 HOH HOH B . H 4 HOH 37 88 88 HOH HOH B . H 4 HOH 38 89 89 HOH HOH B . H 4 HOH 39 91 91 HOH HOH B . H 4 HOH 40 92 92 HOH HOH B . H 4 HOH 41 93 93 HOH HOH B . H 4 HOH 42 94 94 HOH HOH B . H 4 HOH 43 95 95 HOH HOH B . H 4 HOH 44 96 96 HOH HOH B . H 4 HOH 45 97 97 HOH HOH B . H 4 HOH 46 98 98 HOH HOH B . H 4 HOH 47 99 99 HOH HOH B . H 4 HOH 48 100 100 HOH HOH B . H 4 HOH 49 112 112 HOH HOH B . H 4 HOH 50 117 117 HOH HOH B . H 4 HOH 51 118 118 HOH HOH B . H 4 HOH 52 119 119 HOH HOH B . H 4 HOH 53 122 122 HOH HOH B . H 4 HOH 54 123 123 HOH HOH B . H 4 HOH 55 127 127 HOH HOH B . H 4 HOH 56 129 129 HOH HOH B . H 4 HOH 57 130 130 HOH HOH B . H 4 HOH 58 131 131 HOH HOH B . H 4 HOH 59 135 135 HOH HOH B . H 4 HOH 60 136 136 HOH HOH B . H 4 HOH 61 138 138 HOH HOH B . H 4 HOH 62 140 140 HOH HOH B . H 4 HOH 63 141 141 HOH HOH B . H 4 HOH 64 142 142 HOH HOH B . H 4 HOH 65 144 144 HOH HOH B . H 4 HOH 66 150 150 HOH HOH B . H 4 HOH 67 154 154 HOH HOH B . H 4 HOH 68 155 155 HOH HOH B . H 4 HOH 69 156 156 HOH HOH B . H 4 HOH 70 157 157 HOH HOH B . H 4 HOH 71 158 158 HOH HOH B . H 4 HOH 72 159 159 HOH HOH B . H 4 HOH 73 160 160 HOH HOH B . H 4 HOH 74 162 162 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 34 ? 1_555 NA ? C NA . ? A NA 21 ? 1_555 O ? G HOH . ? A HOH 83 ? 1_555 132.8 ? 2 O ? H HOH . ? B HOH 27 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 38 ? 1_555 91.3 ? 3 O ? H HOH . ? B HOH 27 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 40 ? 1_555 75.8 ? 4 O ? H HOH . ? B HOH 38 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 40 ? 1_555 89.4 ? 5 O ? H HOH . ? B HOH 27 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 55 ? 1_555 119.2 ? 6 O ? H HOH . ? B HOH 38 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 55 ? 1_555 148.2 ? 7 O ? H HOH . ? B HOH 40 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 55 ? 1_555 89.8 ? 8 O ? H HOH . ? B HOH 27 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 65 ? 1_555 57.9 ? 9 O ? H HOH . ? B HOH 38 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 65 ? 1_555 126.1 ? 10 O ? H HOH . ? B HOH 40 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 65 ? 1_555 118.7 ? 11 O ? H HOH . ? B HOH 55 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 65 ? 1_555 81.3 ? 12 O ? H HOH . ? B HOH 27 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 127 ? 1_555 68.4 ? 13 O ? H HOH . ? B HOH 38 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 127 ? 1_555 75.6 ? 14 O ? H HOH . ? B HOH 40 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 127 ? 1_555 140.6 ? 15 O ? H HOH . ? B HOH 55 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 127 ? 1_555 121.8 ? 16 O ? H HOH . ? B HOH 65 ? 1_555 CA ? F CA . ? B CA 22 ? 1_555 O ? H HOH . ? B HOH 127 ? 1_555 53.1 ? 17 O ? H HOH . ? B HOH 68 ? 1_555 NA ? D NA . ? B NA 23 ? 1_555 O ? H HOH . ? B HOH 73 ? 1_555 76.9 ? 18 O ? H HOH . ? B HOH 68 ? 1_555 NA ? D NA . ? B NA 23 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 122.4 ? 19 O ? H HOH . ? B HOH 73 ? 1_555 NA ? D NA . ? B NA 23 ? 1_555 O ? H HOH . ? B HOH 141 ? 1_555 81.3 ? 20 O ? H HOH . ? B HOH 36 ? 1_555 NA ? E NA . ? B NA 24 ? 1_555 O ? H HOH . ? B HOH 82 ? 1_555 75.1 ? 21 O ? H HOH . ? B HOH 36 ? 1_555 NA ? E NA . ? B NA 24 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 71.9 ? 22 O ? H HOH . ? B HOH 82 ? 1_555 NA ? E NA . ? B NA 24 ? 1_555 O ? H HOH . ? B HOH 142 ? 1_555 78.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.value' 11 5 'Structure model' '_struct_conn.pdbx_dist_value' 12 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 EPMR . ? ? ? ? phasing ? ? ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 84 ? ? O A HOH 152 ? ? 1.70 2 1 O A HOH 59 ? ? O A HOH 152 ? ? 1.87 3 1 N7 B DG 19 ? ? O B HOH 36 ? ? 2.00 4 1 "C3'" A DG 10 ? ? O A HOH 44 ? ? 2.04 5 1 N3 B DA 18 ? ? O B HOH 31 ? ? 2.04 6 1 N3 B DC 11 ? ? O B HOH 39 ? ? 2.13 7 1 O B HOH 159 ? ? O B HOH 162 ? ? 2.15 8 1 OP2 B DT 13 ? ? O B HOH 117 ? ? 2.16 9 1 O B HOH 130 ? ? O B HOH 135 ? ? 2.17 10 1 O A HOH 48 ? ? O A HOH 113 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 10 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 53 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 1.84 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.655 1.593 0.062 0.010 N 2 1 C2 A DC 2 ? ? O2 A DC 2 ? ? 1.180 1.240 -0.060 0.009 N 3 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.302 1.353 -0.051 0.008 N 4 1 C5 A DC 4 ? ? C6 A DC 4 ? ? 1.284 1.339 -0.055 0.008 N 5 1 C2 A DC 5 ? ? O2 A DC 5 ? ? 1.184 1.240 -0.056 0.009 N 6 1 "O3'" A DA 8 ? ? "C3'" A DA 8 ? ? 1.357 1.419 -0.062 0.006 N 7 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.426 1.374 0.052 0.007 N 8 1 C6 A DG 10 ? ? O6 A DG 10 ? ? 1.177 1.237 -0.060 0.009 N 9 1 N1 B DC 11 ? ? C2 B DC 11 ? ? 1.322 1.397 -0.075 0.010 N 10 1 C5 B DC 11 ? ? C6 B DC 11 ? ? 1.287 1.339 -0.052 0.008 N 11 1 C4 B DT 13 ? ? O4 B DT 13 ? ? 1.287 1.228 0.059 0.009 N 12 1 C4 B DC 15 ? ? C5 B DC 15 ? ? 1.480 1.425 0.055 0.008 N 13 1 "C2'" B DG 17 ? ? "C1'" B DG 17 ? ? 1.583 1.519 0.064 0.010 N 14 1 C5 B DA 18 ? ? C6 B DA 18 ? ? 1.348 1.406 -0.058 0.009 N 15 1 C6 B DG 20 ? ? O6 B DG 20 ? ? 1.292 1.237 0.055 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DC 4 ? ? "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.44 110.10 -6.66 1.00 N 2 1 "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? "C1'" A DC 4 ? ? 94.53 102.40 -7.87 0.80 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.67 108.30 3.37 0.30 N 4 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 109.27 103.10 6.17 0.90 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.22 108.30 1.92 0.30 N 6 1 "C5'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 125.15 115.70 9.45 1.20 N 7 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 98.75 105.70 -6.95 0.90 N 8 1 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 125.28 115.70 9.58 1.20 N 9 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 96.68 102.40 -5.72 0.80 N 10 1 "C1'" B DC 12 ? ? "O4'" B DC 12 ? ? "C4'" B DC 12 ? ? 103.90 110.10 -6.20 1.00 N 11 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.32 108.30 4.02 0.30 N 12 1 "O5'" B DT 13 ? ? P B DT 13 ? ? OP2 B DT 13 ? ? 97.21 105.70 -8.49 0.90 N 13 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.23 108.30 3.93 0.30 N 14 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 100.98 105.90 -4.92 0.80 N 15 1 N9 B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 99.19 112.60 -13.41 1.90 N 16 1 "C5'" B DG 19 ? ? "C4'" B DG 19 ? ? "C3'" B DG 19 ? ? 122.98 115.70 7.28 1.20 N 17 1 N9 B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 97.98 112.60 -14.62 1.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 7 ? ? 0.077 'SIDE CHAIN' 2 1 DA A 8 ? ? 0.070 'SIDE CHAIN' 3 1 DG A 9 ? ? 0.078 'SIDE CHAIN' 4 1 DC B 12 ? ? 0.127 'SIDE CHAIN' 5 1 DC B 14 ? ? 0.093 'SIDE CHAIN' 6 1 DG B 16 ? ? 0.150 'SIDE CHAIN' 7 1 DA B 18 ? ? 0.080 'SIDE CHAIN' 8 1 DG B 19 ? ? 0.132 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NA NA NA N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZFA 'double helix' 1ZFA 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.026 -0.183 0.222 -2.595 -1.144 -3.692 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.167 -0.091 -0.233 0.008 -0.751 -2.406 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.053 -0.030 -0.372 11.220 -5.995 -7.407 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.210 -0.128 -0.098 18.807 -13.420 1.050 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DC 5 1_555 B DG 6 1_555 0.116 -0.186 -0.435 14.420 -15.065 -3.431 5 A_DC5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 0.019 -0.165 0.095 5.829 -11.762 -1.543 6 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.420 0.079 -0.364 -7.716 -11.794 4.026 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DA 8 1_555 B DT 3 1_555 0.144 -0.060 -0.025 -8.182 -10.233 3.638 8 A_DA8:DT13_B A 8 ? B 13 ? 20 1 1 A DG 9 1_555 B DC 2 1_555 0.294 -0.163 -0.034 -3.535 5.430 -5.886 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 4.265 -0.639 -1.624 -0.845 37.307 -41.745 10 A_DG10:DC11_B A 10 ? B 11 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.808 -2.243 3.211 1.014 -1.919 30.821 -3.839 1.713 3.313 -3.604 -1.906 30.896 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DT 3 1_555 B DA 8 1_555 -1.210 -2.115 3.206 0.505 0.581 20.946 -6.053 3.533 3.117 1.598 -1.390 20.960 2 AA_DC2DT3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DC 4 1_555 B DG 7 1_555 0.667 -1.498 3.102 -4.032 5.471 31.075 -3.634 -1.881 2.700 10.061 7.416 31.792 3 AA_DT3DC4:DG17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DC 5 1_555 B DG 6 1_555 -0.720 -1.975 3.265 -1.755 6.515 31.914 -4.589 0.993 2.852 11.686 3.147 32.601 4 AA_DC4DC5:DG16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 -0.740 -1.570 3.482 -4.788 17.130 29.240 -5.288 0.530 2.326 30.623 8.559 34.124 5 AA_DC5DG6:DC15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B DC 5 1_555 A DG 7 1_555 B DC 4 1_555 1.344 -1.746 3.593 3.847 11.315 28.478 -5.549 -1.757 2.860 21.824 -7.421 30.836 6 AA_DG6DG7:DC14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DA 8 1_555 B DT 3 1_555 -0.484 -2.035 3.113 -1.817 9.808 28.719 -5.572 0.612 2.332 19.062 3.531 30.367 7 AA_DG7DA8:DT13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DA 8 1_555 B DT 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.026 -1.939 3.243 -0.883 1.801 33.468 -3.651 -0.097 3.137 3.125 1.531 33.526 8 AA_DA8DG9:DC12DT13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -3.178 -2.082 3.995 16.393 -8.848 36.130 -1.918 6.608 2.776 -13.240 -24.530 40.506 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CALCIUM ION' CA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZF9 _pdbx_initial_refinement_model.details 'pdb entry 1ZF9' #