data_1ZFT # _entry.id 1ZFT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZFT pdb_00001zft 10.2210/pdb1zft/pdb NDB UR0060 ? ? RCSB RCSB032668 ? ? WWPDB D_1000032668 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1X9C 'The crystal structure of an all-RNA minimal Hairpin Ribozyme (G8, U39C, low salt conditions)' unspecified PDB 1X9K 'The crystal structure of an all-RNA minimal Hairpin Ribozyme (G8, U39C, high salt conditions)' unspecified PDB 1ZFR 'An all-RNA Hairpin Ribozyme with mutation U39C and 2MA at A-1(low salt)' unspecified PDB 1ZFV ;An all-RNA Hairpin Ribozyme with mutations G8A, U39C and 2'-OH at A-1 (low salt) ; unspecified PDB 1ZFX 'All-RNA Hairpin Ribozyme with mutations G8U and U39C (low salt)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZFT _pdbx_database_status.recvd_initial_deposition_date 2005-04-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Wedekind, J.E.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer.' Biochemistry 45 686 700 2006 BICHAW US 0006-2960 0033 ? 16411744 10.1021/bi051887k 1 'Crystallization and x-ray diffraction analysis of an all-RNA U39C mutant of the minimal hairpin ribozyme' 'Acta Crystallogr.,Sect.D' 59 142 145 2003 ABCRE6 DK 0907-4449 0766 ? ? ? 2 'Functional involvement of G8 in the hairpin ribozyme cleavage mechanism' 'Embo J.' 20 6434 6442 2001 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salter, J.' 1 ? primary 'Krucinska, J.' 2 ? primary 'Alam, S.' 3 ? primary 'Grum-Tokars, V.' 4 ? primary 'Wedekind, J.E.' 5 ? 1 'Grum-Tokars, V.' 6 ? 1 'Milovanovic, M.' 7 ? 1 'Wedekind, J.E.' 8 ? 2 'Pinard, R.' 9 ? 2 'Hampel, K.J.' 10 ? 2 'Heckman, J.E.' 11 ? 2 'Lambert, D.' 12 ? 2 'Chan, P.A.' 13 ? 2 'Major, F.' 14 ? 2 'Burke, J.M.' 15 ? # _cell.entry_id 1ZFT _cell.length_a 93.400 _cell.length_b 93.400 _cell.length_c 131.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZFT _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3'" 4066.497 1 ? ? ? ? 2 polymer syn "5'-R(*CP*GP*GP*UP*GP*AP*IP*AP*AP*GP*GP*G)-3'" 3955.433 1 ? G8I ? ? 3 polymer syn "5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3'" 5535.445 1 ? ? ? ? 4 polymer syn "5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'" 5991.568 1 ? U39C ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 2 ? ? ? ? 7 water nat water 18.015 33 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'UCCC(A2M)GUCCACCG' UCCCAGUCCACCG A ? 2 polyribonucleotide no no CGGUGAIAAGGG CGGUGAIAAGGG B ? 3 polyribonucleotide no no GGCAGAGAAACACACGA GGCAGAGAAACACACGA C ? 4 polyribonucleotide no no UCGUGGUACAUUACCUGCC UCGUGGUACAUUACCUGCC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 C n 1 5 A2M n 1 6 G n 1 7 U n 1 8 C n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 G n 2 1 C n 2 2 G n 2 3 G n 2 4 U n 2 5 G n 2 6 A n 2 7 I n 2 8 A n 2 9 A n 2 10 G n 2 11 G n 2 12 G n 3 1 G n 3 2 G n 3 3 C n 3 4 A n 3 5 G n 3 6 A n 3 7 G n 3 8 A n 3 9 A n 3 10 A n 3 11 C n 3 12 A n 3 13 C n 3 14 A n 3 15 C n 3 16 G n 3 17 A n 4 1 U n 4 2 C n 4 3 G n 4 4 U n 4 5 G n 4 6 G n 4 7 U n 4 8 A n 4 9 C n 4 10 A n 4 11 U n 4 12 U n 4 13 A n 4 14 C n 4 15 C n 4 16 U n 4 17 G n 4 18 C n 4 19 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Derived from Satellite Tobacco Ringspot Virus' 2 1 sample ? ? ? ? ? 'Derived from Satellite Tobacco Ringspot Virus' 3 1 sample ? ? ? ? ? 'Derived from Satellite Tobacco Ringspot Virus' 4 1 sample ? ? ? ? ? 'Derived from Satellite Tobacco Ringspot Virus' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1ZFT 1ZFT ? ? ? 2 2 PDB 1ZFT 1ZFT ? ? ? 3 3 PDB 1ZFT 1ZFT ? ? ? 4 4 PDB 1ZFT 1ZFT ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZFT A 1 ? 13 ? 1ZFT 1 ? 13 ? 1 13 2 2 1ZFT B 1 ? 12 ? 1ZFT 2 ? 13 ? 2 13 3 3 1ZFT C 1 ? 17 ? 1ZFT 15 ? 31 ? 15 31 4 4 1ZFT D 1 ? 19 ? 1ZFT 31 ? 49 ? 31 49 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 I 'RNA linking' y 'INOSINIC ACID' ? 'C10 H13 N4 O8 P' 348.206 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1ZFT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.2 _exptl_crystal.density_percent_sol 70.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'PEG 2000 MME, LITHIUM SULFATE, SPERMIDINE, COBALT HEXAAMINE, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 2000 MME' ? ? ? 1 2 1 'LITHIUM SULFATE' ? ? ? 1 3 1 SPERMIDINE ? ? ? 1 4 1 'COBALT HEXAAMINE' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'LITHIUM SULFATE' ? ? ? 1 7 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2004-11-29 _diffrn_detector.details 'BENT TRIANGULAR ASYMMETRIC CUT SI(111) MONOCHROMATOR (PROVIDES HORIZONTAL FOCUSSING), RH-COATED SI MIRROR FOR VERTICAL FOCUSING' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BENT TRIANGULAR ASYMMETRIC CUT SI(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength 0.978 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZFT _reflns.observed_criterion_sigma_I -5 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 47 _reflns.d_resolution_high 2.33 _reflns.number_obs 15007 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.04 _reflns.pdbx_netI_over_sigmaI 26.2 _reflns.B_iso_Wilson_estimate 65.9 _reflns.pdbx_redundancy 8.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.41 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.445 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ZFT _refine.ls_number_reflns_obs 14997 _refine.ls_number_reflns_all 15007 _refine.pdbx_ls_sigma_I -5 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1649069.87 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.46 _refine.ls_d_res_high 2.33 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.9 _refine.ls_number_reflns_R_free 1191 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 66.4 _refine.aniso_B[1][1] -11.20 _refine.aniso_B[2][2] -11.20 _refine.aniso_B[3][3] 22.39 _refine.aniso_B[1][2] -6.94 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.303334 _refine.solvent_model_param_bsol 41.2926 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'MLI TARGET THROUGHOUT' _refine.pdbx_starting_model 'PDB ENTRY 1ZFR' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values CNS _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZFT _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.65 _refine_analyze.Luzzati_d_res_low_obs 47.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.64 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1294 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1346 _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 30.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.99 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.88 2.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.93 3.5 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.53 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.29 4.0 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 4 _refine_ls_shell.d_res_high 2.33 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_R_work 3330 _refine_ls_shell.R_factor_R_work 0.429 _refine_ls_shell.percent_reflns_obs 99.1 _refine_ls_shell.R_factor_R_free 0.42 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 8.2 _refine_ls_shell.number_reflns_R_free 299 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 ion.param dna-rna.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param cobalt.top 'X-RAY DIFFRACTION' 3 cobalt.par ion.top 'X-RAY DIFFRACTION' 4 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 1ZFT _struct.title 'The crystal structure of an all-RNA minimal Hairpin Ribozyme with mutant G8I at the cleavage site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZFT _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;hairpin ribozyme, all-RNA, cobalt hexaamine, mutation, inosine, U39C, junctionless, low salt, S-turn, E-loop, ribose zipper, catalytic RNA, 2'-OMe, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? K N N 7 ? # _struct_biol.id 1 _struct_biol.details 'The asymmetric unit comprised of chains A,B,C and D forms the biological unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A C 4 A A2M 5 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A G 6 P ? ? A A2M 5 A G 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A2M 5 N3 ? ? ? 1_555 B A 8 N6 ? ? A A2M 5 B A 9 1_555 ? ? ? ? ? ? 'A2M-A MISPAIR' ? ? ? hydrog11 hydrog ? ? A A2M 5 N3 ? ? ? 1_555 B A 9 N6 ? ? A A2M 5 B A 10 1_555 ? ? ? ? ? ? 'A2M-A MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 C C 11 N3 ? ? A G 6 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 C C 11 O2 ? ? A G 6 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 C C 11 N4 ? ? A G 6 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 B A 6 N1 ? ? A C 8 B A 7 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 10 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 10 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 19 N3 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 19 O2 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 19 N4 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 17 N1 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 17 O6 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 17 N2 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 4 N1 ? ? ? 1_555 D U 16 N3 ? ? C A 18 D U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C A 4 N6 ? ? ? 1_555 D U 16 O4 ? ? C A 18 D U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C A 6 N1 ? ? ? 1_555 D C 14 N4 ? ? C A 20 D C 44 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog45 hydrog ? ? C G 7 N2 ? ? ? 1_555 D A 13 N7 ? ? C G 21 D A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 11 O2 ? ? C A 22 D U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? C A 8 N7 ? ? ? 1_555 D U 11 N3 ? ? C A 22 D U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog48 hydrog ? ? C A 9 N6 ? ? ? 1_555 D A 10 N1 ? ? C A 23 D A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? C A 9 N7 ? ? ? 1_555 D A 10 N6 ? ? C A 23 D A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog50 hydrog ? ? C A 10 N6 ? ? ? 1_555 D A 8 N7 ? ? C A 24 D A 38 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog51 hydrog ? ? C A 12 N1 ? ? ? 1_555 D G 6 N1 ? ? C A 26 D G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog52 hydrog ? ? C A 12 N6 ? ? ? 1_555 D G 6 O6 ? ? C A 26 D G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog53 hydrog ? ? C C 13 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 13 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C A 14 N1 ? ? ? 1_555 D U 4 N3 ? ? C A 28 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C A 14 N6 ? ? ? 1_555 D U 4 O4 ? ? C A 28 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C A 17 N1 ? ? ? 1_555 D U 1 N3 ? ? C A 31 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C A 17 N6 ? ? ? 1_555 D U 1 O4 ? ? C A 31 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 103 ? 2 'BINDING SITE FOR RESIDUE SO4 A 103' AC2 Software D NCO 101 ? 4 'BINDING SITE FOR RESIDUE NCO D 101' AC3 Software B NCO 102 ? 4 'BINDING SITE FOR RESIDUE NCO B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 C A 2 ? C A 2 . ? 1_555 ? 2 AC1 2 NCO F . ? NCO B 102 . ? 1_555 ? 3 AC2 4 A C 6 ? A C 20 . ? 1_555 ? 4 AC2 4 G C 7 ? G C 21 . ? 1_555 ? 5 AC2 4 A D 10 ? A D 40 . ? 1_555 ? 6 AC2 4 U D 11 ? U D 41 . ? 1_555 ? 7 AC3 4 SO4 E . ? SO4 A 103 . ? 1_555 ? 8 AC3 4 G B 10 ? G B 11 . ? 1_555 ? 9 AC3 4 G B 11 ? G B 12 . ? 1_555 ? 10 AC3 4 G B 12 ? G B 13 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ZFT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZFT _atom_sites.fract_transf_matrix[1][1] 0.010707 _atom_sites.fract_transf_matrix[1][2] 0.006181 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012363 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007605 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 A2M 5 5 5 A2M A2M A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n B 2 1 C 1 2 2 C C B . n B 2 2 G 2 3 3 G G B . n B 2 3 G 3 4 4 G G B . n B 2 4 U 4 5 5 U U B . n B 2 5 G 5 6 6 G G B . n B 2 6 A 6 7 7 A A B . n B 2 7 I 7 8 8 I I B . n B 2 8 A 8 9 9 A A B . n B 2 9 A 9 10 10 A A B . n B 2 10 G 10 11 11 G G B . n B 2 11 G 11 12 12 G G B . n B 2 12 G 12 13 13 G G B . n C 3 1 G 1 15 15 G G C . n C 3 2 G 2 16 16 G G C . n C 3 3 C 3 17 17 C C C . n C 3 4 A 4 18 18 A A C . n C 3 5 G 5 19 19 G G C . n C 3 6 A 6 20 20 A A C . n C 3 7 G 7 21 21 G G C . n C 3 8 A 8 22 22 A A C . n C 3 9 A 9 23 23 A A C . n C 3 10 A 10 24 24 A A C . n C 3 11 C 11 25 25 C C C . n C 3 12 A 12 26 26 A A C . n C 3 13 C 13 27 27 C C C . n C 3 14 A 14 28 28 A A C . n C 3 15 C 15 29 29 C C C . n C 3 16 G 16 30 30 G G C . n C 3 17 A 17 31 31 A A C . n D 4 1 U 1 31 31 U U D . n D 4 2 C 2 32 32 C C D . n D 4 3 G 3 33 33 G G D . n D 4 4 U 4 34 34 U U D . n D 4 5 G 5 35 35 G G D . n D 4 6 G 6 36 36 G G D . n D 4 7 U 7 37 37 U U D . n D 4 8 A 8 38 38 A A D . n D 4 9 C 9 39 39 C C D . n D 4 10 A 10 40 40 A A D . n D 4 11 U 11 41 41 U U D . n D 4 12 U 12 42 42 U U D . n D 4 13 A 13 43 43 A A D . n D 4 14 C 14 44 44 C C D . n D 4 15 C 15 45 45 C C D . n D 4 16 U 16 46 46 U U D . n D 4 17 G 17 47 47 G G D . n D 4 18 C 18 48 48 C C D . n D 4 19 C 19 49 49 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 1 103 103 SO4 SO4 A . F 6 NCO 1 102 102 NCO NCO B . G 6 NCO 1 101 101 NCO NCO D . H 7 HOH 1 104 12 HOH HOH A . H 7 HOH 2 105 13 HOH HOH A . H 7 HOH 3 106 14 HOH HOH A . H 7 HOH 4 107 20 HOH HOH A . H 7 HOH 5 108 21 HOH HOH A . I 7 HOH 1 16 16 HOH HOH B . I 7 HOH 2 17 17 HOH HOH B . J 7 HOH 1 32 2 HOH HOH C . J 7 HOH 2 33 3 HOH HOH C . J 7 HOH 3 34 9 HOH HOH C . J 7 HOH 4 35 10 HOH HOH C . J 7 HOH 5 36 11 HOH HOH C . J 7 HOH 6 37 15 HOH HOH C . J 7 HOH 7 38 18 HOH HOH C . J 7 HOH 8 39 23 HOH HOH C . J 7 HOH 9 40 24 HOH HOH C . J 7 HOH 10 41 26 HOH HOH C . J 7 HOH 11 42 27 HOH HOH C . J 7 HOH 12 43 28 HOH HOH C . J 7 HOH 13 44 34 HOH HOH C . K 7 HOH 1 102 1 HOH HOH D . K 7 HOH 2 103 4 HOH HOH D . K 7 HOH 3 104 5 HOH HOH D . K 7 HOH 4 105 6 HOH HOH D . K 7 HOH 5 106 7 HOH HOH D . K 7 HOH 6 107 8 HOH HOH D . K 7 HOH 7 108 19 HOH HOH D . K 7 HOH 8 109 25 HOH HOH D . K 7 HOH 9 110 29 HOH HOH D . K 7 HOH 10 111 30 HOH HOH D . K 7 HOH 11 112 31 HOH HOH D . K 7 HOH 12 113 32 HOH HOH D . K 7 HOH 13 114 33 HOH HOH D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A2M _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A2M _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' . ? 2 CrystalClear 'data scaling' '(MSC/RIGAKU)' ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A C 2 ? ? "C3'" A C 2 ? ? "C2'" A C 2 ? ? 108.63 102.60 6.03 1.00 N 2 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.59 108.50 5.09 0.70 N 3 1 N9 D A 38 ? ? "C1'" D A 38 ? ? "C2'" D A 38 ? ? 122.26 114.00 8.26 1.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A2M P P N N 38 A2M OP1 O N N 39 A2M OP3 O N N 40 A2M "O5'" O N N 41 A2M "C5'" C N N 42 A2M "C4'" C N R 43 A2M "O4'" O N N 44 A2M "C3'" C N R 45 A2M "O3'" O N N 46 A2M "C2'" C N R 47 A2M "O2'" O N N 48 A2M "C1'" C N R 49 A2M "CM'" C N N 50 A2M N9 N Y N 51 A2M C8 C Y N 52 A2M N7 N Y N 53 A2M C5 C Y N 54 A2M C6 C Y N 55 A2M N6 N N N 56 A2M N1 N Y N 57 A2M C2 C Y N 58 A2M N3 N Y N 59 A2M C4 C Y N 60 A2M HOP3 H N N 61 A2M "H5'" H N N 62 A2M "H5''" H N N 63 A2M "H4'" H N N 64 A2M "H3'" H N N 65 A2M "HO3'" H N N 66 A2M "H2'" H N N 67 A2M "H1'" H N N 68 A2M "HM'1" H N N 69 A2M "HM'2" H N N 70 A2M "HM'3" H N N 71 A2M H8 H N N 72 A2M H61 H N N 73 A2M H62 H N N 74 A2M H2 H N N 75 A2M OP2 O N N 76 A2M HOP2 H N N 77 C OP3 O N N 78 C P P N N 79 C OP1 O N N 80 C OP2 O N N 81 C "O5'" O N N 82 C "C5'" C N N 83 C "C4'" C N R 84 C "O4'" O N N 85 C "C3'" C N S 86 C "O3'" O N N 87 C "C2'" C N R 88 C "O2'" O N N 89 C "C1'" C N R 90 C N1 N N N 91 C C2 C N N 92 C O2 O N N 93 C N3 N N N 94 C C4 C N N 95 C N4 N N N 96 C C5 C N N 97 C C6 C N N 98 C HOP3 H N N 99 C HOP2 H N N 100 C "H5'" H N N 101 C "H5''" H N N 102 C "H4'" H N N 103 C "H3'" H N N 104 C "HO3'" H N N 105 C "H2'" H N N 106 C "HO2'" H N N 107 C "H1'" H N N 108 C H41 H N N 109 C H42 H N N 110 C H5 H N N 111 C H6 H N N 112 G OP3 O N N 113 G P P N N 114 G OP1 O N N 115 G OP2 O N N 116 G "O5'" O N N 117 G "C5'" C N N 118 G "C4'" C N R 119 G "O4'" O N N 120 G "C3'" C N S 121 G "O3'" O N N 122 G "C2'" C N R 123 G "O2'" O N N 124 G "C1'" C N R 125 G N9 N Y N 126 G C8 C Y N 127 G N7 N Y N 128 G C5 C Y N 129 G C6 C N N 130 G O6 O N N 131 G N1 N N N 132 G C2 C N N 133 G N2 N N N 134 G N3 N N N 135 G C4 C Y N 136 G HOP3 H N N 137 G HOP2 H N N 138 G "H5'" H N N 139 G "H5''" H N N 140 G "H4'" H N N 141 G "H3'" H N N 142 G "HO3'" H N N 143 G "H2'" H N N 144 G "HO2'" H N N 145 G "H1'" H N N 146 G H8 H N N 147 G H1 H N N 148 G H21 H N N 149 G H22 H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 I OP3 O N N 154 I P P N N 155 I OP1 O N N 156 I OP2 O N N 157 I "O5'" O N N 158 I "C5'" C N N 159 I "C4'" C N R 160 I "O4'" O N N 161 I "C3'" C N S 162 I "O3'" O N N 163 I "C2'" C N R 164 I "O2'" O N N 165 I "C1'" C N R 166 I N9 N Y N 167 I C8 C Y N 168 I N7 N Y N 169 I C5 C Y N 170 I C6 C N N 171 I O6 O N N 172 I N1 N N N 173 I C2 C N N 174 I N3 N N N 175 I C4 C Y N 176 I HOP3 H N N 177 I HOP2 H N N 178 I "H5'" H N N 179 I "H5''" H N N 180 I "H4'" H N N 181 I "H3'" H N N 182 I "HO3'" H N N 183 I "H2'" H N N 184 I "HO2'" H N N 185 I "H1'" H N N 186 I H8 H N N 187 I H1 H N N 188 I H2 H N N 189 NCO CO CO N N 190 NCO N1 N N N 191 NCO N2 N N N 192 NCO N3 N N N 193 NCO N4 N N N 194 NCO N5 N N N 195 NCO N6 N N N 196 NCO HN11 H N N 197 NCO HN12 H N N 198 NCO HN13 H N N 199 NCO HN21 H N N 200 NCO HN22 H N N 201 NCO HN23 H N N 202 NCO HN31 H N N 203 NCO HN32 H N N 204 NCO HN33 H N N 205 NCO HN41 H N N 206 NCO HN42 H N N 207 NCO HN43 H N N 208 NCO HN51 H N N 209 NCO HN52 H N N 210 NCO HN53 H N N 211 NCO HN61 H N N 212 NCO HN62 H N N 213 NCO HN63 H N N 214 SO4 S S N N 215 SO4 O1 O N N 216 SO4 O2 O N N 217 SO4 O3 O N N 218 SO4 O4 O N N 219 U OP3 O N N 220 U P P N N 221 U OP1 O N N 222 U OP2 O N N 223 U "O5'" O N N 224 U "C5'" C N N 225 U "C4'" C N R 226 U "O4'" O N N 227 U "C3'" C N S 228 U "O3'" O N N 229 U "C2'" C N R 230 U "O2'" O N N 231 U "C1'" C N R 232 U N1 N N N 233 U C2 C N N 234 U O2 O N N 235 U N3 N N N 236 U C4 C N N 237 U O4 O N N 238 U C5 C N N 239 U C6 C N N 240 U HOP3 H N N 241 U HOP2 H N N 242 U "H5'" H N N 243 U "H5''" H N N 244 U "H4'" H N N 245 U "H3'" H N N 246 U "HO3'" H N N 247 U "H2'" H N N 248 U "HO2'" H N N 249 U "H1'" H N N 250 U H3 H N N 251 U H5 H N N 252 U H6 H N N 253 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A2M P OP1 doub N N 40 A2M P OP3 sing N N 41 A2M P "O5'" sing N N 42 A2M OP3 HOP3 sing N N 43 A2M "O5'" "C5'" sing N N 44 A2M "C5'" "C4'" sing N N 45 A2M "C5'" "H5'" sing N N 46 A2M "C5'" "H5''" sing N N 47 A2M "C4'" "O4'" sing N N 48 A2M "C4'" "C3'" sing N N 49 A2M "C4'" "H4'" sing N N 50 A2M "O4'" "C1'" sing N N 51 A2M "C3'" "O3'" sing N N 52 A2M "C3'" "C2'" sing N N 53 A2M "C3'" "H3'" sing N N 54 A2M "O3'" "HO3'" sing N N 55 A2M "C2'" "O2'" sing N N 56 A2M "C2'" "C1'" sing N N 57 A2M "C2'" "H2'" sing N N 58 A2M "O2'" "CM'" sing N N 59 A2M "C1'" N9 sing N N 60 A2M "C1'" "H1'" sing N N 61 A2M "CM'" "HM'1" sing N N 62 A2M "CM'" "HM'2" sing N N 63 A2M "CM'" "HM'3" sing N N 64 A2M N9 C8 sing Y N 65 A2M N9 C4 sing Y N 66 A2M C8 N7 doub Y N 67 A2M C8 H8 sing N N 68 A2M N7 C5 sing Y N 69 A2M C5 C6 sing Y N 70 A2M C5 C4 doub Y N 71 A2M C6 N6 sing N N 72 A2M C6 N1 doub Y N 73 A2M N6 H61 sing N N 74 A2M N6 H62 sing N N 75 A2M N1 C2 sing Y N 76 A2M C2 N3 doub Y N 77 A2M C2 H2 sing N N 78 A2M N3 C4 sing Y N 79 A2M P OP2 sing N N 80 A2M OP2 HOP2 sing N N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 I OP3 P sing N N 160 I OP3 HOP3 sing N N 161 I P OP1 doub N N 162 I P OP2 sing N N 163 I P "O5'" sing N N 164 I OP2 HOP2 sing N N 165 I "O5'" "C5'" sing N N 166 I "C5'" "C4'" sing N N 167 I "C5'" "H5'" sing N N 168 I "C5'" "H5''" sing N N 169 I "C4'" "O4'" sing N N 170 I "C4'" "C3'" sing N N 171 I "C4'" "H4'" sing N N 172 I "O4'" "C1'" sing N N 173 I "C3'" "O3'" sing N N 174 I "C3'" "C2'" sing N N 175 I "C3'" "H3'" sing N N 176 I "O3'" "HO3'" sing N N 177 I "C2'" "O2'" sing N N 178 I "C2'" "C1'" sing N N 179 I "C2'" "H2'" sing N N 180 I "O2'" "HO2'" sing N N 181 I "C1'" N9 sing N N 182 I "C1'" "H1'" sing N N 183 I N9 C8 sing Y N 184 I N9 C4 sing Y N 185 I C8 N7 doub Y N 186 I C8 H8 sing N N 187 I N7 C5 sing Y N 188 I C5 C6 sing N N 189 I C5 C4 doub Y N 190 I C6 O6 doub N N 191 I C6 N1 sing N N 192 I N1 C2 sing N N 193 I N1 H1 sing N N 194 I C2 N3 doub N N 195 I C2 H2 sing N N 196 I N3 C4 sing N N 197 NCO CO N1 sing N N 198 NCO CO N2 sing N N 199 NCO CO N3 sing N N 200 NCO CO N4 sing N N 201 NCO CO N5 sing N N 202 NCO CO N6 sing N N 203 NCO N1 HN11 sing N N 204 NCO N1 HN12 sing N N 205 NCO N1 HN13 sing N N 206 NCO N2 HN21 sing N N 207 NCO N2 HN22 sing N N 208 NCO N2 HN23 sing N N 209 NCO N3 HN31 sing N N 210 NCO N3 HN32 sing N N 211 NCO N3 HN33 sing N N 212 NCO N4 HN41 sing N N 213 NCO N4 HN42 sing N N 214 NCO N4 HN43 sing N N 215 NCO N5 HN51 sing N N 216 NCO N5 HN52 sing N N 217 NCO N5 HN53 sing N N 218 NCO N6 HN61 sing N N 219 NCO N6 HN62 sing N N 220 NCO N6 HN63 sing N N 221 SO4 S O1 doub N N 222 SO4 S O2 doub N N 223 SO4 S O3 sing N N 224 SO4 S O4 sing N N 225 U OP3 P sing N N 226 U OP3 HOP3 sing N N 227 U P OP1 doub N N 228 U P OP2 sing N N 229 U P "O5'" sing N N 230 U OP2 HOP2 sing N N 231 U "O5'" "C5'" sing N N 232 U "C5'" "C4'" sing N N 233 U "C5'" "H5'" sing N N 234 U "C5'" "H5''" sing N N 235 U "C4'" "O4'" sing N N 236 U "C4'" "C3'" sing N N 237 U "C4'" "H4'" sing N N 238 U "O4'" "C1'" sing N N 239 U "C3'" "O3'" sing N N 240 U "C3'" "C2'" sing N N 241 U "C3'" "H3'" sing N N 242 U "O3'" "HO3'" sing N N 243 U "C2'" "O2'" sing N N 244 U "C2'" "C1'" sing N N 245 U "C2'" "H2'" sing N N 246 U "O2'" "HO2'" sing N N 247 U "C1'" N1 sing N N 248 U "C1'" "H1'" sing N N 249 U N1 C2 sing N N 250 U N1 C6 sing N N 251 U C2 O2 doub N N 252 U C2 N3 sing N N 253 U N3 C4 sing N N 254 U N3 H3 sing N N 255 U C4 O4 doub N N 256 U C4 C5 sing N N 257 U C5 C6 doub N N 258 U C5 H5 sing N N 259 U C6 H6 sing N N 260 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZFT 'double helix' 1ZFT 'a-form double helix' 1ZFT 'bulge loop' 1ZFT 'mismatched base pair' 1ZFT 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 B G 12 1_555 0.370 -0.125 -0.218 3.612 -14.503 2.730 1 A_C2:G13_B A 2 ? B 13 ? 19 1 1 A C 3 1_555 B G 11 1_555 0.156 -0.191 -0.112 -2.779 -4.384 1.839 2 A_C3:G12_B A 3 ? B 12 ? 19 1 1 A C 4 1_555 B G 10 1_555 0.464 -0.115 0.118 0.704 3.870 5.642 3 A_C4:G11_B A 4 ? B 11 ? 19 1 1 A A2M 5 1_555 B A 8 1_555 6.588 -3.671 -0.255 15.127 5.000 -31.385 4 A_A2M5:A9_B A 5 ? B 9 ? ? 10 1 A C 8 1_555 B A 6 1_555 -2.064 0.443 -0.872 20.729 -17.406 5.322 5 A_C8:A7_B A 8 ? B 7 ? ? ? 1 A C 9 1_555 B G 5 1_555 -0.379 0.070 0.134 2.239 -9.996 5.624 6 A_C9:G6_B A 9 ? B 6 ? 19 1 1 A A 10 1_555 B U 4 1_555 -0.134 -0.138 0.298 2.373 -11.694 4.939 7 A_A10:U5_B A 10 ? B 5 ? 20 1 1 A C 11 1_555 B G 3 1_555 0.494 0.020 0.334 2.986 -11.612 9.258 8 A_C11:G4_B A 11 ? B 4 ? 19 1 1 A C 12 1_555 B G 2 1_555 0.625 -0.139 0.183 2.687 -15.102 7.577 9 A_C12:G3_B A 12 ? B 3 ? 19 1 1 A G 13 1_555 B C 1 1_555 0.142 -0.034 0.108 -1.501 -7.249 5.274 10 A_G13:C2_B A 13 ? B 2 ? 19 1 1 C G 1 1_555 D C 19 1_555 -0.231 -0.150 0.723 5.598 -7.027 -2.433 11 C_G15:C49_D C 15 ? D 49 ? 19 1 1 C G 2 1_555 D C 18 1_555 -0.536 -0.205 0.581 12.304 -12.218 0.752 12 C_G16:C48_D C 16 ? D 48 ? 19 1 1 C C 3 1_555 D G 17 1_555 -0.053 0.003 -0.119 7.298 -13.710 2.816 13 C_C17:G47_D C 17 ? D 47 ? 19 1 1 C A 4 1_555 D U 16 1_555 -0.045 -0.092 0.017 0.148 -9.051 6.759 14 C_A18:U46_D C 18 ? D 46 ? 20 1 1 C G 5 1_555 D C 15 1_555 -0.604 -0.188 -0.457 -8.084 -7.442 5.127 15 C_G19:C45_D C 19 ? D 45 ? 19 1 1 C A 6 1_555 D C 14 1_555 1.946 0.403 -0.579 -14.075 -4.923 16.059 16 C_A20:C44_D C 20 ? D 44 ? ? 1 1 C G 7 1_555 D A 13 1_555 7.074 -4.734 -0.212 -5.821 2.803 -7.784 17 C_G21:A43_D C 21 ? D 43 ? ? 10 1 C A 8 1_555 D U 11 1_555 -4.264 -1.880 -0.255 -2.611 -8.928 -99.780 18 C_A22:U41_D C 22 ? D 41 ? 24 4 1 C A 9 1_555 D A 10 1_555 -4.304 0.981 -0.436 2.471 -21.758 -98.654 19 C_A23:A40_D C 23 ? D 40 ? 5 4 1 C A 10 1_555 D A 8 1_555 5.361 3.304 -0.766 -1.398 -17.837 -155.455 20 C_A24:A38_D C 24 ? D 38 ? ? ? 1 C C 11 1_555 A G 6 1_555 0.129 -0.171 0.091 20.113 -13.269 -1.011 21 C_C25:G6_A C 25 ? A 6 ? 19 1 1 C A 12 1_555 D G 6 1_555 0.135 1.337 -0.442 -12.032 -16.102 -19.054 22 C_A26:G36_D C 26 ? D 36 ? 8 ? 1 C C 13 1_555 D G 5 1_555 0.025 -0.146 0.141 5.969 -22.499 0.494 23 C_C27:G35_D C 27 ? D 35 ? 19 1 1 C A 14 1_555 D U 4 1_555 -0.307 -0.085 0.502 6.276 -18.845 4.517 24 C_A28:U34_D C 28 ? D 34 ? 20 1 1 C C 15 1_555 D G 3 1_555 0.093 -0.054 0.088 5.929 -17.243 3.970 25 C_C29:G33_D C 29 ? D 33 ? 19 1 1 C G 16 1_555 D C 2 1_555 -0.283 -0.155 0.236 -5.973 -14.894 -2.353 26 C_G30:C32_D C 30 ? D 32 ? 19 1 1 C A 17 1_555 D U 1 1_555 0.368 -0.125 0.348 0.114 -7.224 2.994 27 C_A31:U31_D C 31 ? D 31 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 B G 12 1_555 A C 3 1_555 B G 11 1_555 -0.591 -1.998 3.404 -0.654 9.946 30.787 -5.262 0.953 2.658 18.147 1.192 32.323 1 AA_C2C3:G12G13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A C 3 1_555 B G 11 1_555 A C 4 1_555 B G 10 1_555 0.650 -1.670 3.299 0.022 8.964 27.813 -5.129 -1.285 2.644 18.063 -0.045 29.195 2 AA_C3C4:G11G12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A C 4 1_555 B G 10 1_555 A A2M 5 1_555 B A 8 1_555 -0.377 -0.718 5.212 -1.920 27.381 69.169 -1.976 0.217 4.704 23.223 1.629 73.781 3 AA_C4A2M5:A9G11_BB A 4 ? B 11 ? A 5 ? B 9 ? 1 A A2M 5 1_555 B A 8 1_555 A C 8 1_555 B A 6 1_555 -0.418 -0.182 6.418 4.289 6.815 66.842 -0.681 0.703 6.342 6.164 -3.879 67.269 4 AA_A2M5C8:A7A9_BB A 5 ? B 9 ? A 8 ? B 7 ? 1 A C 8 1_555 B A 6 1_555 A C 9 1_555 B G 5 1_555 0.128 -1.608 3.838 -9.086 12.327 35.423 -4.114 -1.429 3.014 19.191 14.146 38.493 5 AA_C8C9:G6A7_BB A 8 ? B 7 ? A 9 ? B 6 ? 1 A C 9 1_555 B G 5 1_555 A A 10 1_555 B U 4 1_555 -0.138 -1.563 3.074 -1.086 7.241 33.899 -3.617 0.083 2.696 12.241 1.836 34.658 6 AA_C9A10:U5G6_BB A 9 ? B 6 ? A 10 ? B 5 ? 1 A A 10 1_555 B U 4 1_555 A C 11 1_555 B G 3 1_555 0.089 -1.403 3.223 -0.339 5.015 33.346 -3.197 -0.206 2.986 8.678 0.587 33.712 7 AA_A10C11:G4U5_BB A 10 ? B 5 ? A 11 ? B 4 ? 1 A C 11 1_555 B G 3 1_555 A C 12 1_555 B G 2 1_555 -0.112 -2.020 3.051 3.007 7.192 30.807 -4.831 0.682 2.506 13.272 -5.550 31.754 8 AA_C11C12:G3G4_BB A 11 ? B 4 ? A 12 ? B 3 ? 1 A C 12 1_555 B G 2 1_555 A G 13 1_555 B C 1 1_555 0.034 -1.941 3.139 1.199 11.008 28.605 -5.530 0.139 2.254 21.298 -2.319 30.632 9 AA_C12G13:C2G3_BB A 12 ? B 3 ? A 13 ? B 2 ? 1 C G 1 1_555 D C 19 1_555 C G 2 1_555 D C 18 1_555 -0.507 -1.162 3.021 -1.815 5.031 32.464 -2.827 0.615 2.838 8.923 3.220 32.890 10 CC_G15G16:C48C49_DD C 15 ? D 49 ? C 16 ? D 48 ? 1 C G 2 1_555 D C 18 1_555 C C 3 1_555 D G 17 1_555 0.306 -1.310 3.344 4.917 8.136 36.184 -3.102 0.163 3.004 12.828 -7.754 37.372 11 CC_G16C17:G47C48_DD C 16 ? D 48 ? C 17 ? D 47 ? 1 C C 3 1_555 D G 17 1_555 C A 4 1_555 D U 16 1_555 0.437 -1.702 3.232 -1.874 13.547 31.309 -4.803 -1.009 2.292 23.734 3.284 34.097 12 CC_C17A18:U46G47_DD C 17 ? D 47 ? C 18 ? D 46 ? 1 C A 4 1_555 D U 16 1_555 C G 5 1_555 D C 15 1_555 0.120 -2.023 3.513 1.166 7.398 28.189 -5.631 0.016 2.902 14.859 -2.343 29.147 13 CC_A18G19:C45U46_DD C 18 ? D 46 ? C 19 ? D 45 ? 1 C G 5 1_555 D C 15 1_555 C A 6 1_555 D C 14 1_555 0.875 -1.410 3.514 2.871 7.765 37.800 -3.125 -0.953 3.228 11.812 -4.368 38.664 14 CC_G19A20:C44C45_DD C 19 ? D 45 ? C 20 ? D 44 ? 1 C A 6 1_555 D C 14 1_555 C G 7 1_555 D A 13 1_555 -0.511 -0.857 3.172 4.970 5.987 61.362 -1.100 0.718 3.040 5.841 -4.849 61.806 15 CC_A20G21:A43C44_DD C 20 ? D 44 ? C 21 ? D 43 ? 1 C G 7 1_555 D A 13 1_555 C A 8 1_555 D U 11 1_555 -2.304 -0.413 3.433 3.981 1.354 10.648 -3.839 16.760 2.347 6.949 -20.436 11.445 16 CC_G21A22:U41A43_DD C 21 ? D 43 ? C 22 ? D 41 ? 1 C A 8 1_555 D U 11 1_555 C A 9 1_555 D A 10 1_555 -0.121 -2.283 3.424 -10.029 3.230 44.257 -3.250 -0.756 3.211 4.217 13.092 45.433 17 CC_A22A23:A40U41_DD C 22 ? D 41 ? C 23 ? D 40 ? 1 C A 9 1_555 D A 10 1_555 C A 10 1_555 D A 8 1_555 -3.351 -3.302 3.732 -4.979 1.928 76.392 -2.730 2.537 3.840 1.557 4.021 76.550 18 CC_A23A24:A38A40_DD C 23 ? D 40 ? C 24 ? D 38 ? 1 C A 10 1_555 D A 8 1_555 C C 11 1_555 A G 6 1_555 2.552 -0.338 2.847 -0.105 4.805 -30.939 -0.171 4.713 2.874 -8.939 -0.195 -31.301 19 CC_A24C25:G6A38_AD C 24 ? D 38 ? C 25 ? A 6 ? 1 C C 11 1_555 A G 6 1_555 C A 12 1_555 D G 6 1_555 0.204 -1.966 3.916 6.062 4.573 48.168 -2.793 0.297 3.724 5.563 -7.374 48.727 20 CC_C25A26:G36G6_DA C 25 ? A 6 ? C 26 ? D 36 ? 1 C A 12 1_555 D G 6 1_555 C C 13 1_555 D G 5 1_555 1.102 -0.757 2.871 -5.218 4.502 27.506 -2.408 -3.251 2.471 9.284 10.761 28.340 21 CC_A26C27:G35G36_DD C 26 ? D 36 ? C 27 ? D 35 ? 1 C C 13 1_555 D G 5 1_555 C A 14 1_555 D U 4 1_555 0.469 -1.198 3.111 -2.000 9.276 33.446 -3.285 -1.062 2.663 15.729 3.392 34.729 22 CC_C27A28:U34G35_DD C 27 ? D 35 ? C 28 ? D 34 ? 1 C A 14 1_555 D U 4 1_555 C C 15 1_555 D G 3 1_555 0.230 -1.075 3.279 3.742 0.137 34.514 -1.824 0.191 3.281 0.229 -6.284 34.710 23 CC_A28C29:G33U34_DD C 28 ? D 34 ? C 29 ? D 33 ? 1 C C 15 1_555 D G 3 1_555 C G 16 1_555 D C 2 1_555 0.008 -1.596 3.351 -0.183 11.409 32.925 -4.317 -0.040 2.667 19.418 0.311 34.794 24 CC_C29G30:C32G33_DD C 29 ? D 33 ? C 30 ? D 32 ? 1 C G 16 1_555 D C 2 1_555 C A 17 1_555 D U 1 1_555 0.725 -1.564 3.045 2.986 1.398 33.957 -2.873 -0.796 3.031 2.387 -5.098 34.112 25 CC_G30A31:U31C32_DD C 30 ? D 32 ? C 31 ? D 31 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'SULFATE ION' SO4 6 'COBALT HEXAMMINE(III)' NCO 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZFR _pdbx_initial_refinement_model.details 'PDB ENTRY 1ZFR' #