HEADER HYDROLASE 21-APR-05 1ZGG TITLE SOLUTION STRUCTURE OF A LOW MOLECULAR WEIGHT PROTEIN TYROSINE TITLE 2 PHOSPHATASE FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE COMPND 3 YWLE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA/BETA, FOUR-STRANDED PARALLEL BETA SHEET, STRUCTURAL GENOMICS, KEYWDS 2 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.XU,B.XIA,C.JIN REVDAT 4 29-MAY-24 1ZGG 1 REMARK REVDAT 3 02-MAR-22 1ZGG 1 REMARK REVDAT 2 24-FEB-09 1ZGG 1 VERSN REVDAT 1 28-MAR-06 1ZGG 0 JRNL AUTH H.XU,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURE OF A LOW-MOLECULAR-WEIGHT PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE FROM BACILLUS SUBTILIS JRNL REF J.BACTERIOL. V. 188 1509 2006 JRNL REFN ISSN 0021-9193 JRNL PMID 16452434 JRNL DOI 10.1128/JB.188.4.1509-1517.2006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, AMBER 7.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), DAVID CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZGG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032691. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.1M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM LMW-PTPASE U-15N,13C; 50MM REMARK 210 SODIUM CHLORIDE 50MM TRIS BUFFER; REMARK 210 30MM DTT; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5, CYANA REMARK 210 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 35 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 8 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 19 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 -57.56 62.82 REMARK 500 1 ARG A 13 -28.23 -163.28 REMARK 500 1 PRO A 43 6.25 -59.84 REMARK 500 1 TYR A 98 21.77 -75.82 REMARK 500 1 ASP A 148 26.21 -156.56 REMARK 500 1 ARG A 149 15.76 43.79 REMARK 500 2 ASN A 10 -65.11 57.77 REMARK 500 2 ARG A 13 -26.73 -162.43 REMARK 500 2 PRO A 43 8.87 -58.92 REMARK 500 2 ASN A 44 10.91 -140.01 REMARK 500 2 ALA A 47 -155.85 42.99 REMARK 500 2 ASN A 63 21.55 -153.48 REMARK 500 2 TYR A 98 25.09 -75.61 REMARK 500 2 VAL A 109 -57.64 -123.11 REMARK 500 2 ARG A 149 74.74 45.11 REMARK 500 3 ASN A 10 -85.71 33.52 REMARK 500 3 ARG A 13 -28.17 -162.59 REMARK 500 3 PHE A 40 32.42 -141.72 REMARK 500 3 PRO A 43 -0.16 -55.06 REMARK 500 3 ARG A 97 44.31 -66.60 REMARK 500 3 ASP A 148 11.43 -140.43 REMARK 500 4 ASN A 10 -61.28 63.34 REMARK 500 4 ARG A 13 -21.77 -162.53 REMARK 500 4 PRO A 43 13.80 -57.83 REMARK 500 4 ALA A 47 -153.37 41.93 REMARK 500 4 VAL A 109 -50.02 -120.52 REMARK 500 5 ARG A 13 -3.09 -160.60 REMARK 500 5 PRO A 43 8.97 -58.59 REMARK 500 5 ASN A 44 11.97 -140.64 REMARK 500 5 ARG A 149 90.84 -69.83 REMARK 500 6 ARG A 13 -23.71 85.84 REMARK 500 6 PRO A 43 3.46 -57.60 REMARK 500 6 ASN A 44 18.89 -141.79 REMARK 500 6 TYR A 98 23.27 -72.23 REMARK 500 7 ASN A 10 -65.38 -2.03 REMARK 500 7 ARG A 13 -31.22 -159.00 REMARK 500 7 PRO A 43 12.13 -58.61 REMARK 500 7 ALA A 47 -163.00 42.87 REMARK 500 7 ALA A 61 73.39 54.44 REMARK 500 7 TYR A 98 21.29 -71.97 REMARK 500 7 ASP A 148 -154.34 -122.06 REMARK 500 8 ASN A 10 -53.84 61.15 REMARK 500 8 ARG A 13 -27.53 -161.84 REMARK 500 8 PRO A 43 5.97 -61.30 REMARK 500 8 ASN A 44 21.15 -143.25 REMARK 500 8 SER A 66 171.84 -59.78 REMARK 500 9 ASN A 10 -55.84 62.51 REMARK 500 9 ARG A 13 -28.15 -162.15 REMARK 500 9 PRO A 43 2.53 -58.91 REMARK 500 9 ASN A 44 19.59 -141.59 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 32 ASN A 33 1 149.53 REMARK 500 ASP A 148 ARG A 149 1 -148.77 REMARK 500 VAL A 32 ASN A 33 7 149.30 REMARK 500 VAL A 32 ASN A 33 11 148.68 REMARK 500 ASN A 44 GLY A 45 13 145.44 REMARK 500 VAL A 32 ASN A 33 14 149.01 REMARK 500 VAL A 32 ASN A 33 15 148.74 REMARK 500 ARG A 97 TYR A 98 16 149.99 REMARK 500 VAL A 32 ASN A 33 18 147.56 REMARK 500 ASN A 44 GLY A 45 20 149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 149 0.15 SIDE CHAIN REMARK 500 13 ARG A 13 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZGG A 1 150 UNP P39155 YWLE_BACSU 1 150 SEQRES 1 A 150 MET ASP ILE ILE PHE VAL CYS THR GLY ASN THR CYS ARG SEQRES 2 A 150 SER PRO MET ALA GLU ALA LEU PHE LYS SER ILE ALA GLU SEQRES 3 A 150 ARG GLU GLY LEU ASN VAL ASN VAL ARG SER ALA GLY VAL SEQRES 4 A 150 PHE ALA SER PRO ASN GLY LYS ALA THR PRO HIS ALA VAL SEQRES 5 A 150 GLU ALA LEU PHE GLU LYS HIS ILE ALA LEU ASN HIS VAL SEQRES 6 A 150 SER SER PRO LEU THR GLU GLU LEU MET GLU SER ALA ASP SEQRES 7 A 150 LEU VAL LEU ALA MET THR HIS GLN HIS LYS GLN ILE ILE SEQRES 8 A 150 ALA SER GLN PHE GLY ARG TYR ARG ASP LYS VAL PHE THR SEQRES 9 A 150 LEU LYS GLU TYR VAL THR GLY SER HIS GLY ASP VAL LEU SEQRES 10 A 150 ASP PRO PHE GLY GLY SER ILE ASP ILE TYR LYS GLN THR SEQRES 11 A 150 ARG ASP GLU LEU GLU GLU LEU LEU ARG GLN LEU ALA LYS SEQRES 12 A 150 GLN LEU LYS LYS ASP ARG ARG HELIX 1 1 ARG A 13 GLY A 29 1 17 HELIX 2 2 HIS A 50 LYS A 58 1 9 HELIX 3 3 THR A 70 ALA A 77 1 8 HELIX 4 4 THR A 84 GLY A 96 1 13 HELIX 5 5 TYR A 98 ASP A 100 5 3 HELIX 6 6 LYS A 106 GLY A 111 1 6 HELIX 7 7 SER A 123 LYS A 146 1 24 SHEET 1 A 4 ASN A 33 ALA A 37 0 SHEET 2 A 4 ASP A 2 VAL A 6 1 N ILE A 3 O ARG A 35 SHEET 3 A 4 LEU A 79 ALA A 82 1 O LEU A 81 N ILE A 4 SHEET 4 A 4 VAL A 102 THR A 104 1 O PHE A 103 N ALA A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1