HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-APR-05 1ZGM OBSLTE 21-MAR-06 1ZGM 2FNO TITLE CRYSTAL STRUCTURE OF PUTATIVE GLUTATHIONE S-TRANSFERASE TITLE 2 (15162326) FROM AGROBACTERIUM TUMEFACIENS AT 2.25 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 15162326, PUTATIVE GLUTATHIONE S-TRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 21-MAR-06 1ZGM 1 OBSLTE REVDAT 2 19-JUL-05 1ZGM 1 REMARK REVDAT 1 31-MAY-05 1ZGM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLUTATHIONE JRNL TITL 2 S-TRANSFERASE (15162326) FROM AGROBACTERIUM JRNL TITL 3 TUMEFACIENS AT 2.25 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 61.6 REMARK 3 NUMBER OF REFLECTIONS : 26795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 4024 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.02000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3713 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3426 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5047 ; 1.481 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7907 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 6.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;30.603 ;23.677 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;15.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4164 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 759 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 883 ; 0.257 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3452 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2067 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 106 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2355 ; 1.522 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 968 ; 0.448 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3770 ; 2.576 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 4.959 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1277 ; 6.802 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 236 2 REMARK 3 1 B 3 B 236 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1370 ; 0.040 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 2080 ; 0.290 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 1370 ; 0.250 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2080 ; 0.780 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0203 -5.9464 5.3672 REMARK 3 T TENSOR REMARK 3 T11: -0.2050 T22: -0.1429 REMARK 3 T33: -0.1007 T12: -0.0232 REMARK 3 T13: -0.0025 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.2139 L22: 0.7210 REMARK 3 L33: 3.1429 L12: -0.0179 REMARK 3 L13: -1.3314 L23: 0.0669 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.2009 S13: 0.0250 REMARK 3 S21: 0.0141 S22: -0.0027 S23: 0.1321 REMARK 3 S31: 0.1564 S32: -0.4513 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8366 -1.3224 41.1410 REMARK 3 T TENSOR REMARK 3 T11: -0.0299 T22: -0.0990 REMARK 3 T33: -0.1149 T12: -0.0377 REMARK 3 T13: 0.0269 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.7322 L22: 0.7379 REMARK 3 L33: 4.8486 L12: -0.0960 REMARK 3 L13: -2.1661 L23: 0.1244 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.3005 S13: 0.0575 REMARK 3 S21: -0.0622 S22: 0.0581 S23: 0.0956 REMARK 3 S31: 0.1523 S32: -0.6719 S33: 0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. THERE ARE LARGE DIFFERENCE FOURIER PEAKS REMARK 3 ON THE CRYSTALLOGRAPHIC 2-FOLD AXIS BETWEEN NEAR ASP 107 AND REMARK 3 ASP 110 AND SYMMETRY COPIES FORMING THE BIOLOGICAL UNIT IN REMARK 3 BOTH MONOMERS (A AND B). THESE PEAKS WERE LEFT UNMODELED. 3. REMARK 3 THE N-TERMINAL REGION OF MOLECULE B IS LESS WELL ORDERED A REMARK 3 PEAK IS OBSERVED IN THE DIFFERENCE MAP FOR THE SE ATOM FROM REMARK 3 RESIDUE B1 WHICH WAS NOT MODELED. 4. RESIDUE GLN 73 IS A REMARK 3 RAMACHANDRAN OUTLIER IN BOTH CHAINS. THE ELECTRON DENSITY IS REMARK 3 GOOD IN THIS REGION AND CLEARLY SUPPORTS THIS BACKBONE REMARK 3 CONFORMATION. 5.THE NOMINAL RESOLUTION IS 2.25 A WITH 3267 REMARK 3 OBSERVED REFLECTIONS BETWEEN 2.25-1.90 (18.2% COMPLETE FOR REMARK 3 THIS SHELL) INCLUDED IN THE REFINEMENT. REMARK 4 REMARK 4 1ZGM COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-05-01) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-2005. REMARK 100 THE RCSB ID CODE IS RCSB032697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-2004 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979291,0.964062,0.979127 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : WATER COOLED; SAGITALLY REMARK 200 FOCUSING 2ND CRYSTAL, REMARK 200 ROSENBAUM-ROCK VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APS1 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 53.0 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18.00% PEG 3350, 0.2M POTASSIUM REMARK 280 THIOCYANATE, 10.00% GLYCEROL, ADDITIVE - 0.01M SPERMINE TETRA- REMARK 280 HCL, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.10200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.13050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.10200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.13050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -51.06133 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 106.00291 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH 15 LIES ON A SPECIAL POSITION. REMARK 375 HOH 20 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 32 OG REMARK 470 LYS A 51 CE NZ REMARK 470 ARG A 67 CZ NH1 NH2 REMARK 470 ARG A 118 CD NE CZ NH1 NH2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 GLU A 160 CD OE1 OE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS A 233 CE NZ REMARK 470 ASP B 3 CB CG OD1 OD2 REMARK 470 SER B 32 OG REMARK 470 LYS B 51 CD CE NZ REMARK 470 ARG B 118 CD NE CZ NH1 NH2 REMARK 470 GLN B 127 CG CD OE1 NE2 REMARK 470 GLU B 160 CD OE1 OE2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 GLU B 216 CD OE1 OE2 REMARK 470 GLU B 217 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 22 CG1 ILE A 22 CD1 0.095 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 223 N - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 CYS B 223 N - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 223 GLY A 224 -52.17 REMARK 500 CYS B 223 GLY B 224 -52.53 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354428 RELATED DB: TARGETDB DBREF 1ZGM A 1 236 UNP Q7D2W7 Q7D2W7_AGRT5 1 236 DBREF 1ZGM B 1 236 UNP Q7D2W7 Q7D2W7_AGRT5 1 236 SEQADV 1ZGM MSE A -11 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM GLY A -10 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM SER A -9 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM ASP A -8 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM LYS A -7 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM ILE A -6 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A -5 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A -4 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A -3 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A -2 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A -1 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS A 0 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM MSE A 1 UNP Q7D2W7 MET 1 MODIFIED RESIDUE SEQADV 1ZGM MSE A 5 UNP Q7D2W7 MET 5 MODIFIED RESIDUE SEQADV 1ZGM MSE A 45 UNP Q7D2W7 MET 45 MODIFIED RESIDUE SEQADV 1ZGM MSE A 57 UNP Q7D2W7 MET 57 MODIFIED RESIDUE SEQADV 1ZGM MSE A 74 UNP Q7D2W7 MET 74 MODIFIED RESIDUE SEQADV 1ZGM MSE A 120 UNP Q7D2W7 MET 120 MODIFIED RESIDUE SEQADV 1ZGM MSE A 156 UNP Q7D2W7 MET 156 MODIFIED RESIDUE SEQADV 1ZGM MSE B -11 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM GLY B -10 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM SER B -9 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM ASP B -8 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM LYS B -7 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM ILE B -6 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B -5 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B -4 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B -3 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B -2 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B -1 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM HIS B 0 UNP Q7D2W7 LEADER SEQUENCE SEQADV 1ZGM MSE B 1 UNP Q7D2W7 MET 1 MODIFIED RESIDUE SEQADV 1ZGM MSE B 5 UNP Q7D2W7 MET 5 MODIFIED RESIDUE SEQADV 1ZGM MSE B 45 UNP Q7D2W7 MET 45 MODIFIED RESIDUE SEQADV 1ZGM MSE B 57 UNP Q7D2W7 MET 57 MODIFIED RESIDUE SEQADV 1ZGM MSE B 74 UNP Q7D2W7 MET 74 MODIFIED RESIDUE SEQADV 1ZGM MSE B 120 UNP Q7D2W7 MET 120 MODIFIED RESIDUE SEQADV 1ZGM MSE B 156 UNP Q7D2W7 MET 156 MODIFIED RESIDUE SEQRES 1 A 248 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 248 GLU ASP GLY MSE ASN THR PHE ASP LEU TYR TYR TRP PRO SEQRES 3 A 248 VAL PRO PHE ARG GLY GLN LEU ILE ARG GLY ILE LEU ALA SEQRES 4 A 248 HIS CYS GLY CYS SER TRP ASP GLU HIS ASP VAL ASP ALA SEQRES 5 A 248 ILE GLU GLY LEU MSE ASP CYS GLY ALA GLU LYS GLN PRO SEQRES 6 A 248 VAL ALA PHE MSE GLY PRO PRO VAL LEU ILE ASP ARG GLU SEQRES 7 A 248 ARG ASN PHE ALA ILE SER GLN MSE PRO ALA ILE ALA ILE SEQRES 8 A 248 TYR LEU GLY GLU ARG LEU ASP ILE LEU PRO ALA THR VAL SEQRES 9 A 248 GLU GLY ARG THR LEU SER ALA LYS ILE VAL ASN ASP ALA SEQRES 10 A 248 ASN ASP VAL LEU ASP GLU LEU THR LEU ASN GLY GLY ARG SEQRES 11 A 248 GLU MSE TRP THR PRO GLU LYS TRP GLN GLU PHE VAL PRO SEQRES 12 A 248 ARG LEU GLN LYS TRP ILE ARG ILE PHE ALA ASP THR GLY SEQRES 13 A 248 ALA ARG ASN GLY LEU SER ALA ALA SER GLY PHE MSE LEU SEQRES 14 A 248 GLY THR GLU LYS ILE GLY VAL ALA ASP ILE VAL THR ALA SEQRES 15 A 248 ILE LEU TRP THR THR VAL ALA ASP ARG PHE PRO ALA ILE SEQRES 16 A 248 LYS GLY ILE ILE GLU ASP THR SER PRO ILE ILE TRP GLY SEQRES 17 A 248 LEU SER ARG ARG VAL VAL ALA THR ALA PRO LEU ALA ALA SEQRES 18 A 248 LEU ASN SER LYS SER PHE GLU GLU TYR GLY ASN ALA TYR SEQRES 19 A 248 CYS GLY GLY GLU ILE GLU LYS SER LEU ARG LYS VAL ALA SEQRES 20 A 248 SER SEQRES 1 B 248 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 248 GLU ASP GLY MSE ASN THR PHE ASP LEU TYR TYR TRP PRO SEQRES 3 B 248 VAL PRO PHE ARG GLY GLN LEU ILE ARG GLY ILE LEU ALA SEQRES 4 B 248 HIS CYS GLY CYS SER TRP ASP GLU HIS ASP VAL ASP ALA SEQRES 5 B 248 ILE GLU GLY LEU MSE ASP CYS GLY ALA GLU LYS GLN PRO SEQRES 6 B 248 VAL ALA PHE MSE GLY PRO PRO VAL LEU ILE ASP ARG GLU SEQRES 7 B 248 ARG ASN PHE ALA ILE SER GLN MSE PRO ALA ILE ALA ILE SEQRES 8 B 248 TYR LEU GLY GLU ARG LEU ASP ILE LEU PRO ALA THR VAL SEQRES 9 B 248 GLU GLY ARG THR LEU SER ALA LYS ILE VAL ASN ASP ALA SEQRES 10 B 248 ASN ASP VAL LEU ASP GLU LEU THR LEU ASN GLY GLY ARG SEQRES 11 B 248 GLU MSE TRP THR PRO GLU LYS TRP GLN GLU PHE VAL PRO SEQRES 12 B 248 ARG LEU GLN LYS TRP ILE ARG ILE PHE ALA ASP THR GLY SEQRES 13 B 248 ALA ARG ASN GLY LEU SER ALA ALA SER GLY PHE MSE LEU SEQRES 14 B 248 GLY THR GLU LYS ILE GLY VAL ALA ASP ILE VAL THR ALA SEQRES 15 B 248 ILE LEU TRP THR THR VAL ALA ASP ARG PHE PRO ALA ILE SEQRES 16 B 248 LYS GLY ILE ILE GLU ASP THR SER PRO ILE ILE TRP GLY SEQRES 17 B 248 LEU SER ARG ARG VAL VAL ALA THR ALA PRO LEU ALA ALA SEQRES 18 B 248 LEU ASN SER LYS SER PHE GLU GLU TYR GLY ASN ALA TYR SEQRES 19 B 248 CYS GLY GLY GLU ILE GLU LYS SER LEU ARG LYS VAL ALA SEQRES 20 B 248 SER MODRES 1ZGM MSE A 1 MET SELENOMETHIONINE MODRES 1ZGM MSE A 5 MET SELENOMETHIONINE MODRES 1ZGM MSE A 45 MET SELENOMETHIONINE MODRES 1ZGM MSE A 57 MET SELENOMETHIONINE MODRES 1ZGM MSE A 74 MET SELENOMETHIONINE MODRES 1ZGM MSE A 120 MET SELENOMETHIONINE MODRES 1ZGM MSE A 156 MET SELENOMETHIONINE MODRES 1ZGM MSE B 5 MET SELENOMETHIONINE MODRES 1ZGM MSE B 45 MET SELENOMETHIONINE MODRES 1ZGM MSE B 57 MET SELENOMETHIONINE MODRES 1ZGM MSE B 74 MET SELENOMETHIONINE MODRES 1ZGM MSE B 120 MET SELENOMETHIONINE MODRES 1ZGM MSE B 156 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 45 8 HET MSE A 57 8 HET MSE A 74 8 HET MSE A 120 8 HET MSE A 156 8 HET MSE B 5 8 HET MSE B 45 8 HET MSE B 57 8 HET MSE B 74 8 HET MSE B 120 8 HET MSE B 156 8 HET SCN 1 3 HET SCN 2 3 HET SCN 3 3 HET SCN 4 3 HETNAM MSE SELENOMETHIONINE HETNAM SCN THIOCYANATE ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 SCN 4(C N S 1-) FORMUL 7 HOH *390(H2 O) HELIX 1 1 GLY A 19 CYS A 29 1 11 HELIX 2 2 ASP A 37 CYS A 47 1 11 HELIX 3 3 GLY A 48 GLN A 52 5 5 HELIX 4 4 GLN A 73 LEU A 85 1 13 HELIX 5 5 THR A 91 THR A 113 1 23 HELIX 6 6 LEU A 114 GLY A 117 5 4 HELIX 7 7 THR A 122 ASN A 147 1 26 HELIX 8 8 GLY A 163 PHE A 180 1 18 HELIX 9 9 PHE A 180 SER A 191 1 12 HELIX 10 10 SER A 191 THR A 204 1 14 HELIX 11 11 THR A 204 GLY A 219 1 16 HELIX 12 12 GLY A 224 SER A 236 1 13 HELIX 13 13 GLY B 19 CYS B 29 1 11 HELIX 14 14 ASP B 37 CYS B 47 1 11 HELIX 15 15 GLY B 48 GLN B 52 5 5 HELIX 16 16 GLN B 73 LEU B 85 1 13 HELIX 17 17 THR B 91 THR B 113 1 23 HELIX 18 18 LEU B 114 GLY B 117 5 4 HELIX 19 19 THR B 122 ASN B 147 1 26 HELIX 20 20 GLY B 163 ASP B 178 1 16 HELIX 21 21 PHE B 180 SER B 191 1 12 HELIX 22 22 SER B 191 THR B 204 1 14 HELIX 23 23 THR B 204 GLY B 219 1 16 HELIX 24 24 GLY B 224 SER B 236 1 13 SHEET 1 A 4 TRP A 33 ASP A 34 0 SHEET 2 A 4 PHE A 8 TYR A 11 1 N LEU A 10 O ASP A 34 SHEET 3 A 4 VAL A 61 ASP A 64 -1 O VAL A 61 N TYR A 11 SHEET 4 A 4 PHE A 69 SER A 72 -1 O PHE A 69 N ASP A 64 SHEET 1 B 4 TRP B 33 ASP B 34 0 SHEET 2 B 4 PHE B 8 TYR B 11 1 N LEU B 10 O ASP B 34 SHEET 3 B 4 VAL B 61 ASP B 64 -1 O VAL B 61 N TYR B 11 SHEET 4 B 4 PHE B 69 SER B 72 -1 O PHE B 69 N ASP B 64 CISPEP 1 PRO A 59 PRO A 60 0 7.56 CISPEP 2 PRO B 59 PRO B 60 0 13.12 CRYST1 110.204 50.261 117.660 90.00 115.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009070 0.000000 0.004370 0.00000 SCALE2 0.000000 0.019900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009430 0.00000