data_1ZHN # _entry.id 1ZHN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ZHN RCSB RCSB032734 WWPDB D_1000032734 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1CD1 'Mouse CD1d with no ligand' unspecified PDB 1GZP 'Human CD1b bound to PI' unspecified PDB 1GZQ 'Human CD1b bound to GM1' unspecified PDB 1ONQ 'Human CD1a bound to sulfatide self ligand' unspecified # _pdbx_database_status.entry_id 1ZHN _pdbx_database_status.status_code REL _pdbx_database_status.recvd_initial_deposition_date 2005-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Giabbai, B.' 1 'Sidobre, S.' 2 'Crispin, M.M.D.' 3 'Sanchez Ruiz, Y.' 4 'Bachi, A.' 5 'Kronenberg, M.' 6 'Wilson, I.A.' 7 'Degano, M.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of mouse CD1d bound to the self ligand phosphatidylcholine: a molecular basis for NKT cell activation' J.Immunol. 175 977 984 2005 JOIMA3 US 0022-1767 0952 ? 16002697 ? 1 'Crystal structure of mouse CD1: An MHC-like fold with a large hydrophobic binding groove' Science 277 339 345 1997 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Giabbai, B.' 1 primary 'Sidobre, S.' 2 primary 'Crispin, M.M.D.' 3 primary 'Sanchez Ruiz, Y.' 4 primary 'Bachi, A.' 5 primary 'Kronenberg, M.' 6 primary 'Wilson, I.A.' 7 primary 'Degano, M.' 8 1 'Zeng, Z.' 9 1 'Castano, A.R.' 10 1 'Segelke, B.W.' 11 1 'Stura, E.A.' 12 1 'Peterson, P.A.' 13 1 'Wilson, I.A.' 14 # _cell.entry_id 1ZHN _cell.length_a 41.798 _cell.length_b 106.909 _cell.length_c 110.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZHN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting orthorhombic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD1d1 antigen' 31131.100 1 ? ? ? 'Self phospholipid copurified with protein' 2 polymer man beta-2-microglobulin 11704.359 1 ? ? ? ? 3 non-polymer man N-ACETYL-D-GLUCOSAMINE 221.208 4 ? ? ? ? 4 non-polymer man ALPHA-L-FUCOSE 164.156 2 ? ? ? ? 5 non-polymer man ALPHA-D-MANNOSE 180.156 3 ? ? ? ? 6 non-polymer syn '7-[(DODECANOYLOXY)METHYL]-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-3,5,8-TRIOXA-4-PHOSPHADOTRIACONTAN-1-AMINIUM 4-OXIDE' 804.172 1 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 8 water nat water 18.015 50 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'T-cell surface glycoprotein CD1d1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVK MMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLND TCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWY LQATLDVEAGEEAGLACRVKHSSLGGQDIILYW ; ;NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVK MMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLND TCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWY LQATLDVEAGEEAGLACRVKHSSLGGQDIILYW ; A ? 2 'polypeptide(L)' no no ;IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM ; ;IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TYR n 1 3 THR n 1 4 PHE n 1 5 ARG n 1 6 CYS n 1 7 LEU n 1 8 GLN n 1 9 MET n 1 10 SER n 1 11 SER n 1 12 PHE n 1 13 ALA n 1 14 ASN n 1 15 ARG n 1 16 SER n 1 17 TRP n 1 18 SER n 1 19 ARG n 1 20 THR n 1 21 ASP n 1 22 SER n 1 23 VAL n 1 24 VAL n 1 25 TRP n 1 26 LEU n 1 27 GLY n 1 28 ASP n 1 29 LEU n 1 30 GLN n 1 31 THR n 1 32 HIS n 1 33 ARG n 1 34 TRP n 1 35 SER n 1 36 ASN n 1 37 ASP n 1 38 SER n 1 39 ALA n 1 40 THR n 1 41 ILE n 1 42 SER n 1 43 PHE n 1 44 THR n 1 45 LYS n 1 46 PRO n 1 47 TRP n 1 48 SER n 1 49 GLN n 1 50 GLY n 1 51 LYS n 1 52 LEU n 1 53 SER n 1 54 ASN n 1 55 GLN n 1 56 GLN n 1 57 TRP n 1 58 GLU n 1 59 LYS n 1 60 LEU n 1 61 GLN n 1 62 HIS n 1 63 MET n 1 64 PHE n 1 65 GLN n 1 66 VAL n 1 67 TYR n 1 68 ARG n 1 69 VAL n 1 70 SER n 1 71 PHE n 1 72 THR n 1 73 ARG n 1 74 ASP n 1 75 ILE n 1 76 GLN n 1 77 GLU n 1 78 LEU n 1 79 VAL n 1 80 LYS n 1 81 MET n 1 82 MET n 1 83 SER n 1 84 PRO n 1 85 LYS n 1 86 GLU n 1 87 ASP n 1 88 TYR n 1 89 PRO n 1 90 ILE n 1 91 GLU n 1 92 ILE n 1 93 GLN n 1 94 LEU n 1 95 SER n 1 96 ALA n 1 97 GLY n 1 98 CYS n 1 99 GLU n 1 100 MET n 1 101 TYR n 1 102 PRO n 1 103 GLY n 1 104 ASN n 1 105 ALA n 1 106 SER n 1 107 GLU n 1 108 SER n 1 109 PHE n 1 110 LEU n 1 111 HIS n 1 112 VAL n 1 113 ALA n 1 114 PHE n 1 115 GLN n 1 116 GLY n 1 117 LYS n 1 118 TYR n 1 119 VAL n 1 120 VAL n 1 121 ARG n 1 122 PHE n 1 123 TRP n 1 124 GLY n 1 125 THR n 1 126 SER n 1 127 TRP n 1 128 GLN n 1 129 THR n 1 130 VAL n 1 131 PRO n 1 132 GLY n 1 133 ALA n 1 134 PRO n 1 135 SER n 1 136 TRP n 1 137 LEU n 1 138 ASP n 1 139 LEU n 1 140 PRO n 1 141 ILE n 1 142 LYS n 1 143 VAL n 1 144 LEU n 1 145 ASN n 1 146 ALA n 1 147 ASP n 1 148 GLN n 1 149 GLY n 1 150 THR n 1 151 SER n 1 152 ALA n 1 153 THR n 1 154 VAL n 1 155 GLN n 1 156 MET n 1 157 LEU n 1 158 LEU n 1 159 ASN n 1 160 ASP n 1 161 THR n 1 162 CYS n 1 163 PRO n 1 164 LEU n 1 165 PHE n 1 166 VAL n 1 167 ARG n 1 168 GLY n 1 169 LEU n 1 170 LEU n 1 171 GLU n 1 172 ALA n 1 173 GLY n 1 174 LYS n 1 175 SER n 1 176 ASP n 1 177 LEU n 1 178 GLU n 1 179 LYS n 1 180 GLN n 1 181 GLU n 1 182 LYS n 1 183 PRO n 1 184 VAL n 1 185 ALA n 1 186 TRP n 1 187 LEU n 1 188 SER n 1 189 SER n 1 190 VAL n 1 191 PRO n 1 192 SER n 1 193 SER n 1 194 ALA n 1 195 HIS n 1 196 GLY n 1 197 HIS n 1 198 ARG n 1 199 GLN n 1 200 LEU n 1 201 VAL n 1 202 CYS n 1 203 HIS n 1 204 VAL n 1 205 SER n 1 206 GLY n 1 207 PHE n 1 208 TYR n 1 209 PRO n 1 210 LYS n 1 211 PRO n 1 212 VAL n 1 213 TRP n 1 214 VAL n 1 215 MET n 1 216 TRP n 1 217 MET n 1 218 ARG n 1 219 GLY n 1 220 ASP n 1 221 GLN n 1 222 GLU n 1 223 GLN n 1 224 GLN n 1 225 GLY n 1 226 THR n 1 227 HIS n 1 228 ARG n 1 229 GLY n 1 230 ASP n 1 231 PHE n 1 232 LEU n 1 233 PRO n 1 234 ASN n 1 235 ALA n 1 236 ASP n 1 237 GLU n 1 238 THR n 1 239 TRP n 1 240 TYR n 1 241 LEU n 1 242 GLN n 1 243 ALA n 1 244 THR n 1 245 LEU n 1 246 ASP n 1 247 VAL n 1 248 GLU n 1 249 ALA n 1 250 GLY n 1 251 GLU n 1 252 GLU n 1 253 ALA n 1 254 GLY n 1 255 LEU n 1 256 ALA n 1 257 CYS n 1 258 ARG n 1 259 VAL n 1 260 LYS n 1 261 HIS n 1 262 SER n 1 263 SER n 1 264 LEU n 1 265 GLY n 1 266 GLY n 1 267 GLN n 1 268 ASP n 1 269 ILE n 1 270 ILE n 1 271 LEU n 1 272 TYR n 1 273 TRP n 2 1 ILE n 2 2 GLN n 2 3 LYS n 2 4 THR n 2 5 PRO n 2 6 GLN n 2 7 ILE n 2 8 GLN n 2 9 VAL n 2 10 TYR n 2 11 SER n 2 12 ARG n 2 13 HIS n 2 14 PRO n 2 15 PRO n 2 16 GLU n 2 17 ASN n 2 18 GLY n 2 19 LYS n 2 20 PRO n 2 21 ASN n 2 22 ILE n 2 23 LEU n 2 24 ASN n 2 25 CYS n 2 26 TYR n 2 27 VAL n 2 28 THR n 2 29 GLN n 2 30 PHE n 2 31 HIS n 2 32 PRO n 2 33 PRO n 2 34 HIS n 2 35 ILE n 2 36 GLU n 2 37 ILE n 2 38 GLN n 2 39 MET n 2 40 LEU n 2 41 LYS n 2 42 ASN n 2 43 GLY n 2 44 LYS n 2 45 LYS n 2 46 ILE n 2 47 PRO n 2 48 LYS n 2 49 VAL n 2 50 GLU n 2 51 MET n 2 52 SER n 2 53 ASP n 2 54 MET n 2 55 SER n 2 56 PHE n 2 57 SER n 2 58 LYS n 2 59 ASP n 2 60 TRP n 2 61 SER n 2 62 PHE n 2 63 TYR n 2 64 ILE n 2 65 LEU n 2 66 ALA n 2 67 HIS n 2 68 THR n 2 69 GLU n 2 70 PHE n 2 71 THR n 2 72 PRO n 2 73 THR n 2 74 GLU n 2 75 THR n 2 76 ASP n 2 77 THR n 2 78 TYR n 2 79 ALA n 2 80 CYS n 2 81 ARG n 2 82 VAL n 2 83 LYS n 2 84 HIS n 2 85 ASP n 2 86 SER n 2 87 MET n 2 88 ALA n 2 89 GLU n 2 90 PRO n 2 91 LYS n 2 92 THR n 2 93 VAL n 2 94 TYR n 2 95 TRP n 2 96 ASP n 2 97 ARG n 2 98 ASP n 2 99 MET n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? 'S2 cells' ? ? ? ? ? ? pRmHa-3 ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? 'fruit fly' 'Drosophila melanogaster' 7227 Drosophila ? ? ? ? ? ? ? 'S2 cells' ? ? ? ? ? ? pRmHa-3 ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 GB BAB22206 12832671 25 ;NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVK MMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLND TCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWY LQATLDVEAGEEAGLACRVKHSSLGGQDIILYW ; ? 2 2 UNP B2MG_MOUSE P01887 21 ;IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZHN A 1 ? 273 ? 12832671 25 ? 297 ? 7 279 2 2 1ZHN B 1 ? 99 ? P01887 21 ? 119 ? 1 99 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC saccharide . ALPHA-L-FUCOSE ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN D-saccharide . ALPHA-D-MANNOSE ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG D-saccharide . N-ACETYL-D-GLUCOSAMINE ? 'C8 H15 N O6' 221.208 PC6 non-polymer . '7-[(DODECANOYLOXY)METHYL]-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-3,5,8-TRIOXA-4-PHOSPHADOTRIACONTAN-1-AMINIUM 4-OXIDE' ? 'C45 H90 N O8 P' 804.172 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZHN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.9 _exptl_crystal.density_percent_sol 57.7 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '100 mM Tris, 200 mM NH4(SO4)2, 25% PEG 4000, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-05-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 1ZHN _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.80 _reflns.d_resolution_low 76.70 _reflns.number_all 12734 _reflns.number_obs 12734 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI 8.4 _reflns.B_iso_Wilson_estimate 39.3 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.29 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1810 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ZHN _refine.ls_number_reflns_obs 11481 _refine.ls_number_reflns_all 11481 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 76.70 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.15 _refine.ls_R_factor_obs 0.22174 _refine.ls_R_factor_all 0.22174 _refine.ls_R_factor_R_work 0.21632 _refine.ls_R_factor_R_free 0.28097 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.1 _refine.ls_number_reflns_R_free 1018 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.896 _refine.correlation_coeff_Fo_to_Fc_free 0.838 _refine.B_iso_mean 25.724 _refine.aniso_B[1][1] -1.34 _refine.aniso_B[2][2] -1.16 _refine.aniso_B[3][3] 2.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1CD1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.430 _refine.overall_SU_ML 0.309 _refine.overall_SU_B 16.190 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2987 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 170 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 3207 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 76.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 3255 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2836 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.473 1.971 ? 4423 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.766 3.000 ? 6614 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.160 5.000 ? 366 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.718 24.178 ? 146 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.958 15.000 ? 514 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.189 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 481 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 3423 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 629 'X-RAY DIFFRACTION' ? r_nbd_refined 0.209 0.200 ? 687 'X-RAY DIFFRACTION' ? r_nbd_other 0.186 0.200 ? 3012 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.189 0.200 ? 1537 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.200 ? 2029 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.178 0.200 ? 86 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.110 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.204 0.200 ? 42 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.170 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.688 1.500 ? 2385 'X-RAY DIFFRACTION' ? r_mcbond_other 0.067 1.500 ? 742 'X-RAY DIFFRACTION' ? r_mcangle_it 0.773 2.000 ? 2989 'X-RAY DIFFRACTION' ? r_scbond_it 0.957 3.000 ? 1665 'X-RAY DIFFRACTION' ? r_scangle_it 1.722 4.500 ? 1434 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 792 _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.percent_reflns_obs 95.57 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ZHN _struct.title 'Crystal Structure of mouse CD1d bound to the self ligand phosphatidylcholine' _struct.pdbx_descriptor 'CD1d1 antigen/beta-2-microglobulin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZHN _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM, MEMBRANE PROTEIN' _struct_keywords.text 'MHC fold; antigen binding domain; Ig fold, IMMUNE SYSTEM, MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 4 ? L N N 6 ? M N N 7 ? N N N 8 ? O N N 8 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a heterodimeric CD1d/beta-2microglobulin complex bound to one PC molecule, as found in the crystal asymmetric unit ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 53 ? MET A 81 ? SER A 59 MET A 87 1 ? 29 HELX_P HELX_P2 2 PRO A 134 ? TRP A 136 ? PRO A 140 TRP A 142 5 ? 3 HELX_P HELX_P3 3 LEU A 137 ? ASP A 147 ? LEU A 143 ASP A 153 1 ? 11 HELX_P HELX_P4 4 ASP A 147 ? ASP A 160 ? ASP A 153 ASP A 166 1 ? 14 HELX_P HELX_P5 5 ASP A 160 ? GLY A 173 ? ASP A 166 GLY A 179 1 ? 14 HELX_P HELX_P6 6 GLY A 173 ? GLU A 178 ? GLY A 179 GLU A 184 1 ? 6 HELX_P HELX_P7 7 HIS A 261 ? GLY A 265 ? HIS A 267 GLY A 271 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 98 SG ? ? ? 1_555 A CYS 162 SG ? ? A CYS 104 A CYS 168 1_555 ? ? ? ? ? ? ? 2.041 ? disulf2 disulf ? ? A CYS 202 SG ? ? ? 1_555 A CYS 257 SG ? ? A CYS 208 A CYS 263 1_555 ? ? ? ? ? ? ? 2.030 ? disulf3 disulf ? ? B CYS 25 SG ? ? ? 1_555 B CYS 80 SG ? ? B CYS 25 B CYS 80 1_555 ? ? ? ? ? ? ? 2.028 ? covale1 covale ? ? A ASN 14 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 20 A NAG 280 1_555 ? ? ? ? ? ? ? 1.445 ? covale2 covale ? ? A ASN 36 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 42 A NAG 2 1_555 ? ? ? ? ? ? ? 1.447 ? covale3 covale ? ? A ASN 159 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 165 A NAG 282 1_555 ? ? ? ? ? ? ? 1.442 ? covale4 covale ? ? C NAG . O6 ? ? ? 1_555 D FUC . C1 ? ? A NAG 280 A FUC 281 1_555 ? ? ? ? ? ? ? 1.446 ? covale5 covale ? ? F NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? A NAG 282 A NAG 283 1_555 ? ? ? ? ? ? ? 1.435 ? covale6 covale ? ? F NAG . O6 ? ? ? 1_555 K FUC . C1 ? ? A NAG 282 A FUC 287 1_555 ? ? ? ? ? ? ? 1.452 ? covale7 covale ? ? G NAG . O4 ? ? ? 1_555 H MAN . C1 ? ? A NAG 283 A MAN 284 1_555 ? ? ? ? ? ? ? 1.447 ? covale8 covale ? ? H MAN . O3 ? ? ? 1_555 I MAN . C1 ? ? A MAN 284 A MAN 285 1_555 ? ? ? ? ? ? ? 1.441 ? covale9 covale ? ? H MAN . O6 ? ? ? 1_555 J MAN . C1 ? ? A MAN 284 A MAN 286 1_555 ? ? ? ? ? ? ? 1.446 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 208 A . ? TYR 214 A PRO 209 A ? PRO 215 A 1 -1.45 2 HIS 31 B . ? HIS 31 B PRO 32 B ? PRO 32 B 1 5.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 4 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 4 ? G ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 42 ? PHE A 43 ? SER A 48 PHE A 49 A 2 LEU A 29 ? TRP A 34 ? LEU A 35 TRP A 40 A 3 SER A 18 ? LEU A 26 ? SER A 24 LEU A 32 A 4 TYR A 2 ? PHE A 12 ? TYR A 8 PHE A 18 A 5 GLU A 91 ? TYR A 101 ? GLU A 97 TYR A 107 A 6 ALA A 105 ? PHE A 114 ? ALA A 111 PHE A 120 A 7 LYS A 117 ? TRP A 123 ? LYS A 123 TRP A 129 A 8 SER A 126 ? THR A 129 ? SER A 132 THR A 135 B 1 VAL A 184 ? PRO A 191 ? VAL A 190 PRO A 197 B 2 HIS A 197 ? PHE A 207 ? HIS A 203 PHE A 213 B 3 TRP A 239 ? GLU A 248 ? TRP A 245 GLU A 254 B 4 HIS A 227 ? ARG A 228 ? HIS A 233 ARG A 234 C 1 VAL A 184 ? PRO A 191 ? VAL A 190 PRO A 197 C 2 HIS A 197 ? PHE A 207 ? HIS A 203 PHE A 213 C 3 TRP A 239 ? GLU A 248 ? TRP A 245 GLU A 254 C 4 LEU A 232 ? PRO A 233 ? LEU A 238 PRO A 239 D 1 GLN A 221 ? GLU A 222 ? GLN A 227 GLU A 228 D 2 TRP A 213 ? ARG A 218 ? TRP A 219 ARG A 224 D 3 LEU A 255 ? LYS A 260 ? LEU A 261 LYS A 266 D 4 ILE A 269 ? TYR A 272 ? ILE A 275 TYR A 278 E 1 GLN B 6 ? SER B 11 ? GLN B 6 SER B 11 E 2 ASN B 21 ? PHE B 30 ? ASN B 21 PHE B 30 E 3 PHE B 62 ? PHE B 70 ? PHE B 62 PHE B 70 E 4 GLU B 50 ? MET B 51 ? GLU B 50 MET B 51 F 1 GLN B 6 ? SER B 11 ? GLN B 6 SER B 11 F 2 ASN B 21 ? PHE B 30 ? ASN B 21 PHE B 30 F 3 PHE B 62 ? PHE B 70 ? PHE B 62 PHE B 70 F 4 SER B 55 ? PHE B 56 ? SER B 55 PHE B 56 G 1 LYS B 44 ? LYS B 45 ? LYS B 44 LYS B 45 G 2 GLU B 36 ? LYS B 41 ? GLU B 36 LYS B 41 G 3 TYR B 78 ? LYS B 83 ? TYR B 78 LYS B 83 G 4 LYS B 91 ? TYR B 94 ? LYS B 91 TYR B 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 42 ? O SER A 48 N ARG A 33 ? N ARG A 39 A 2 3 O LEU A 29 ? O LEU A 35 N LEU A 26 ? N LEU A 32 A 3 4 O ARG A 19 ? O ARG A 25 N SER A 11 ? N SER A 17 A 4 5 N CYS A 6 ? N CYS A 12 O ALA A 96 ? O ALA A 102 A 5 6 N GLY A 97 ? N GLY A 103 O PHE A 109 ? O PHE A 115 A 6 7 N VAL A 112 ? N VAL A 118 O VAL A 120 ? O VAL A 126 A 7 8 N TRP A 123 ? N TRP A 129 O SER A 126 ? O SER A 132 B 1 2 N SER A 188 ? N SER A 194 O VAL A 201 ? O VAL A 207 B 2 3 N ARG A 198 ? N ARG A 204 O VAL A 247 ? O VAL A 253 B 3 4 O THR A 244 ? O THR A 250 N HIS A 227 ? N HIS A 233 C 1 2 N SER A 188 ? N SER A 194 O VAL A 201 ? O VAL A 207 C 2 3 N ARG A 198 ? N ARG A 204 O VAL A 247 ? O VAL A 253 C 3 4 O TYR A 240 ? O TYR A 246 N LEU A 232 ? N LEU A 238 D 1 2 O GLN A 221 ? O GLN A 227 N ARG A 218 ? N ARG A 224 D 2 3 N MET A 217 ? N MET A 223 O ALA A 256 ? O ALA A 262 D 3 4 N VAL A 259 ? N VAL A 265 O ILE A 269 ? O ILE A 275 E 1 2 N GLN B 8 ? N GLN B 8 O TYR B 26 ? O TYR B 26 E 2 3 N CYS B 25 ? N CYS B 25 O ALA B 66 ? O ALA B 66 E 3 4 O HIS B 67 ? O HIS B 67 N GLU B 50 ? N GLU B 50 F 1 2 N GLN B 8 ? N GLN B 8 O TYR B 26 ? O TYR B 26 F 2 3 N CYS B 25 ? N CYS B 25 O ALA B 66 ? O ALA B 66 F 3 4 O TYR B 63 ? O TYR B 63 N SER B 55 ? N SER B 55 G 1 2 O LYS B 44 ? O LYS B 44 N LYS B 41 ? N LYS B 41 G 2 3 N GLN B 38 ? N GLN B 38 O ARG B 81 ? O ARG B 81 G 3 4 N VAL B 82 ? N VAL B 82 O LYS B 91 ? O LYS B 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NAG A 280' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FUC A 281' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NAG A 2' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE NAG A 282' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NAG A 283' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MAN A 284' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MAN A 285' AC8 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MAN A 286' AC9 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FUC A 287' BC1 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE PC6 A 1' BC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 2002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 14 ? ASN A 20 . ? 1_555 ? 2 AC1 5 SER A 16 ? SER A 22 . ? 1_555 ? 3 AC1 5 TRP A 17 ? TRP A 23 . ? 1_555 ? 4 AC1 5 FUC D . ? FUC A 281 . ? 1_555 ? 5 AC1 5 HOH N . ? HOH A 296 . ? 1_555 ? 6 AC2 3 TRP A 17 ? TRP A 23 . ? 1_555 ? 7 AC2 3 NAG C . ? NAG A 280 . ? 1_555 ? 8 AC2 3 HIS B 34 ? HIS B 34 . ? 1_555 ? 9 AC3 4 TRP A 17 ? TRP A 23 . ? 1_555 ? 10 AC3 4 SER A 18 ? SER A 24 . ? 1_555 ? 11 AC3 4 ARG A 19 ? ARG A 25 . ? 1_555 ? 12 AC3 4 ASN A 36 ? ASN A 42 . ? 1_555 ? 13 AC4 9 GLY A 124 ? GLY A 130 . ? 1_555 ? 14 AC4 9 THR A 125 ? THR A 131 . ? 1_555 ? 15 AC4 9 GLN A 155 ? GLN A 161 . ? 1_555 ? 16 AC4 9 ASN A 159 ? ASN A 165 . ? 1_555 ? 17 AC4 9 NAG G . ? NAG A 283 . ? 1_555 ? 18 AC4 9 FUC K . ? FUC A 287 . ? 1_555 ? 19 AC4 9 ASN B 42 ? ASN B 42 . ? 3_555 ? 20 AC4 9 GLY B 43 ? GLY B 43 . ? 3_555 ? 21 AC4 9 THR B 77 ? THR B 77 . ? 3_555 ? 22 AC5 6 TRP A 123 ? TRP A 129 . ? 1_555 ? 23 AC5 6 THR A 125 ? THR A 131 . ? 1_555 ? 24 AC5 6 NAG F . ? NAG A 282 . ? 1_555 ? 25 AC5 6 MAN H . ? MAN A 284 . ? 1_555 ? 26 AC5 6 MAN J . ? MAN A 286 . ? 1_555 ? 27 AC5 6 HOH N . ? HOH A 290 . ? 1_555 ? 28 AC6 4 LYS A 51 ? LYS A 57 . ? 1_455 ? 29 AC6 4 NAG G . ? NAG A 283 . ? 1_555 ? 30 AC6 4 MAN I . ? MAN A 285 . ? 1_555 ? 31 AC6 4 MAN J . ? MAN A 286 . ? 1_555 ? 32 AC7 1 MAN H . ? MAN A 284 . ? 1_555 ? 33 AC8 6 GLU A 171 ? GLU A 177 . ? 1_455 ? 34 AC8 6 ALA A 172 ? ALA A 178 . ? 1_455 ? 35 AC8 6 LYS A 174 ? LYS A 180 . ? 1_455 ? 36 AC8 6 SER A 175 ? SER A 181 . ? 1_455 ? 37 AC8 6 NAG G . ? NAG A 283 . ? 1_555 ? 38 AC8 6 MAN H . ? MAN A 284 . ? 1_555 ? 39 AC9 5 SER A 108 ? SER A 114 . ? 1_555 ? 40 AC9 5 TRP A 123 ? TRP A 129 . ? 1_555 ? 41 AC9 5 GLY A 124 ? GLY A 130 . ? 1_555 ? 42 AC9 5 ASN A 159 ? ASN A 165 . ? 1_555 ? 43 AC9 5 NAG F . ? NAG A 282 . ? 1_555 ? 44 BC1 14 SER A 22 ? SER A 28 . ? 1_555 ? 45 BC1 14 ILE A 41 ? ILE A 47 . ? 1_555 ? 46 BC1 14 LEU A 60 ? LEU A 66 . ? 1_555 ? 47 BC1 14 PHE A 64 ? PHE A 70 . ? 1_555 ? 48 BC1 14 TYR A 67 ? TYR A 73 . ? 1_555 ? 49 BC1 14 SER A 70 ? SER A 76 . ? 1_555 ? 50 BC1 14 PHE A 71 ? PHE A 77 . ? 1_555 ? 51 BC1 14 ASP A 74 ? ASP A 80 . ? 1_555 ? 52 BC1 14 VAL A 112 ? VAL A 118 . ? 1_555 ? 53 BC1 14 PHE A 114 ? PHE A 120 . ? 1_555 ? 54 BC1 14 LEU A 144 ? LEU A 150 . ? 1_555 ? 55 BC1 14 ASP A 147 ? ASP A 153 . ? 1_555 ? 56 BC1 14 THR A 150 ? THR A 156 . ? 1_555 ? 57 BC1 14 PHE A 165 ? PHE A 171 . ? 1_555 ? 58 BC2 3 TRP A 25 ? TRP A 31 . ? 1_555 ? 59 BC2 3 SER B 52 ? SER B 52 . ? 1_555 ? 60 BC2 3 TYR B 63 ? TYR B 63 . ? 1_555 ? # _atom_sites.entry_id 1ZHN _atom_sites.fract_transf_matrix[1][1] 0.023925 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009354 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009086 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 7 7 ASN ASN A . n A 1 2 TYR 2 8 8 TYR TYR A . n A 1 3 THR 3 9 9 THR THR A . n A 1 4 PHE 4 10 10 PHE PHE A . n A 1 5 ARG 5 11 11 ARG ARG A . n A 1 6 CYS 6 12 12 CYS CYS A . n A 1 7 LEU 7 13 13 LEU LEU A . n A 1 8 GLN 8 14 14 GLN GLN A . n A 1 9 MET 9 15 15 MET MET A . n A 1 10 SER 10 16 16 SER SER A . n A 1 11 SER 11 17 17 SER SER A . n A 1 12 PHE 12 18 18 PHE PHE A . n A 1 13 ALA 13 19 19 ALA ALA A . n A 1 14 ASN 14 20 20 ASN ASN A . n A 1 15 ARG 15 21 21 ARG ARG A . n A 1 16 SER 16 22 22 SER SER A . n A 1 17 TRP 17 23 23 TRP TRP A . n A 1 18 SER 18 24 24 SER SER A . n A 1 19 ARG 19 25 25 ARG ARG A . n A 1 20 THR 20 26 26 THR THR A . n A 1 21 ASP 21 27 27 ASP ASP A . n A 1 22 SER 22 28 28 SER SER A . n A 1 23 VAL 23 29 29 VAL VAL A . n A 1 24 VAL 24 30 30 VAL VAL A . n A 1 25 TRP 25 31 31 TRP TRP A . n A 1 26 LEU 26 32 32 LEU LEU A . n A 1 27 GLY 27 33 33 GLY GLY A . n A 1 28 ASP 28 34 34 ASP ASP A . n A 1 29 LEU 29 35 35 LEU LEU A . n A 1 30 GLN 30 36 36 GLN GLN A . n A 1 31 THR 31 37 37 THR THR A . n A 1 32 HIS 32 38 38 HIS HIS A . n A 1 33 ARG 33 39 39 ARG ARG A . n A 1 34 TRP 34 40 40 TRP TRP A . n A 1 35 SER 35 41 41 SER SER A . n A 1 36 ASN 36 42 42 ASN ASN A . n A 1 37 ASP 37 43 43 ASP ASP A . n A 1 38 SER 38 44 44 SER SER A . n A 1 39 ALA 39 45 45 ALA ALA A . n A 1 40 THR 40 46 46 THR THR A . n A 1 41 ILE 41 47 47 ILE ILE A . n A 1 42 SER 42 48 48 SER SER A . n A 1 43 PHE 43 49 49 PHE PHE A . n A 1 44 THR 44 50 50 THR THR A . n A 1 45 LYS 45 51 51 LYS LYS A . n A 1 46 PRO 46 52 52 PRO PRO A . n A 1 47 TRP 47 53 53 TRP TRP A . n A 1 48 SER 48 54 54 SER SER A . n A 1 49 GLN 49 55 55 GLN GLN A . n A 1 50 GLY 50 56 56 GLY GLY A . n A 1 51 LYS 51 57 57 LYS LYS A . n A 1 52 LEU 52 58 58 LEU LEU A . n A 1 53 SER 53 59 59 SER SER A . n A 1 54 ASN 54 60 60 ASN ASN A . n A 1 55 GLN 55 61 61 GLN GLN A . n A 1 56 GLN 56 62 62 GLN GLN A . n A 1 57 TRP 57 63 63 TRP TRP A . n A 1 58 GLU 58 64 64 GLU GLU A . n A 1 59 LYS 59 65 65 LYS LYS A . n A 1 60 LEU 60 66 66 LEU LEU A . n A 1 61 GLN 61 67 67 GLN GLN A . n A 1 62 HIS 62 68 68 HIS HIS A . n A 1 63 MET 63 69 69 MET MET A . n A 1 64 PHE 64 70 70 PHE PHE A . n A 1 65 GLN 65 71 71 GLN GLN A . n A 1 66 VAL 66 72 72 VAL VAL A . n A 1 67 TYR 67 73 73 TYR TYR A . n A 1 68 ARG 68 74 74 ARG ARG A . n A 1 69 VAL 69 75 75 VAL VAL A . n A 1 70 SER 70 76 76 SER SER A . n A 1 71 PHE 71 77 77 PHE PHE A . n A 1 72 THR 72 78 78 THR THR A . n A 1 73 ARG 73 79 79 ARG ARG A . n A 1 74 ASP 74 80 80 ASP ASP A . n A 1 75 ILE 75 81 81 ILE ILE A . n A 1 76 GLN 76 82 82 GLN GLN A . n A 1 77 GLU 77 83 83 GLU GLU A . n A 1 78 LEU 78 84 84 LEU LEU A . n A 1 79 VAL 79 85 85 VAL VAL A . n A 1 80 LYS 80 86 86 LYS LYS A . n A 1 81 MET 81 87 87 MET MET A . n A 1 82 MET 82 88 88 MET MET A . n A 1 83 SER 83 89 89 SER SER A . n A 1 84 PRO 84 90 90 PRO PRO A . n A 1 85 LYS 85 91 91 LYS LYS A . n A 1 86 GLU 86 92 92 GLU GLU A . n A 1 87 ASP 87 93 ? ? ? A . n A 1 88 TYR 88 94 ? ? ? A . n A 1 89 PRO 89 95 ? ? ? A . n A 1 90 ILE 90 96 96 ILE ILE A . n A 1 91 GLU 91 97 97 GLU GLU A . n A 1 92 ILE 92 98 98 ILE ILE A . n A 1 93 GLN 93 99 99 GLN GLN A . n A 1 94 LEU 94 100 100 LEU LEU A . n A 1 95 SER 95 101 101 SER SER A . n A 1 96 ALA 96 102 102 ALA ALA A . n A 1 97 GLY 97 103 103 GLY GLY A . n A 1 98 CYS 98 104 104 CYS CYS A . n A 1 99 GLU 99 105 105 GLU GLU A . n A 1 100 MET 100 106 106 MET MET A . n A 1 101 TYR 101 107 107 TYR TYR A . n A 1 102 PRO 102 108 108 PRO PRO A . n A 1 103 GLY 103 109 109 GLY GLY A . n A 1 104 ASN 104 110 110 ASN ASN A . n A 1 105 ALA 105 111 111 ALA ALA A . n A 1 106 SER 106 112 112 SER SER A . n A 1 107 GLU 107 113 113 GLU GLU A . n A 1 108 SER 108 114 114 SER SER A . n A 1 109 PHE 109 115 115 PHE PHE A . n A 1 110 LEU 110 116 116 LEU LEU A . n A 1 111 HIS 111 117 117 HIS HIS A . n A 1 112 VAL 112 118 118 VAL VAL A . n A 1 113 ALA 113 119 119 ALA ALA A . n A 1 114 PHE 114 120 120 PHE PHE A . n A 1 115 GLN 115 121 121 GLN GLN A . n A 1 116 GLY 116 122 122 GLY GLY A . n A 1 117 LYS 117 123 123 LYS LYS A . n A 1 118 TYR 118 124 124 TYR TYR A . n A 1 119 VAL 119 125 125 VAL VAL A . n A 1 120 VAL 120 126 126 VAL VAL A . n A 1 121 ARG 121 127 127 ARG ARG A . n A 1 122 PHE 122 128 128 PHE PHE A . n A 1 123 TRP 123 129 129 TRP TRP A . n A 1 124 GLY 124 130 130 GLY GLY A . n A 1 125 THR 125 131 131 THR THR A . n A 1 126 SER 126 132 132 SER SER A . n A 1 127 TRP 127 133 133 TRP TRP A . n A 1 128 GLN 128 134 134 GLN GLN A . n A 1 129 THR 129 135 135 THR THR A . n A 1 130 VAL 130 136 136 VAL VAL A . n A 1 131 PRO 131 137 137 PRO PRO A . n A 1 132 GLY 132 138 138 GLY GLY A . n A 1 133 ALA 133 139 139 ALA ALA A . n A 1 134 PRO 134 140 140 PRO PRO A . n A 1 135 SER 135 141 141 SER SER A . n A 1 136 TRP 136 142 142 TRP TRP A . n A 1 137 LEU 137 143 143 LEU LEU A . n A 1 138 ASP 138 144 144 ASP ASP A . n A 1 139 LEU 139 145 145 LEU LEU A . n A 1 140 PRO 140 146 146 PRO PRO A . n A 1 141 ILE 141 147 147 ILE ILE A . n A 1 142 LYS 142 148 148 LYS LYS A . n A 1 143 VAL 143 149 149 VAL VAL A . n A 1 144 LEU 144 150 150 LEU LEU A . n A 1 145 ASN 145 151 151 ASN ASN A . n A 1 146 ALA 146 152 152 ALA ALA A . n A 1 147 ASP 147 153 153 ASP ASP A . n A 1 148 GLN 148 154 154 GLN GLN A . n A 1 149 GLY 149 155 155 GLY GLY A . n A 1 150 THR 150 156 156 THR THR A . n A 1 151 SER 151 157 157 SER SER A . n A 1 152 ALA 152 158 158 ALA ALA A . n A 1 153 THR 153 159 159 THR THR A . n A 1 154 VAL 154 160 160 VAL VAL A . n A 1 155 GLN 155 161 161 GLN GLN A . n A 1 156 MET 156 162 162 MET MET A . n A 1 157 LEU 157 163 163 LEU LEU A . n A 1 158 LEU 158 164 164 LEU LEU A . n A 1 159 ASN 159 165 165 ASN ASN A . n A 1 160 ASP 160 166 166 ASP ASP A . n A 1 161 THR 161 167 167 THR THR A . n A 1 162 CYS 162 168 168 CYS CYS A . n A 1 163 PRO 163 169 169 PRO PRO A . n A 1 164 LEU 164 170 170 LEU LEU A . n A 1 165 PHE 165 171 171 PHE PHE A . n A 1 166 VAL 166 172 172 VAL VAL A . n A 1 167 ARG 167 173 173 ARG ARG A . n A 1 168 GLY 168 174 174 GLY GLY A . n A 1 169 LEU 169 175 175 LEU LEU A . n A 1 170 LEU 170 176 176 LEU LEU A . n A 1 171 GLU 171 177 177 GLU GLU A . n A 1 172 ALA 172 178 178 ALA ALA A . n A 1 173 GLY 173 179 179 GLY GLY A . n A 1 174 LYS 174 180 180 LYS LYS A . n A 1 175 SER 175 181 181 SER SER A . n A 1 176 ASP 176 182 182 ASP ASP A . n A 1 177 LEU 177 183 183 LEU LEU A . n A 1 178 GLU 178 184 184 GLU GLU A . n A 1 179 LYS 179 185 185 LYS LYS A . n A 1 180 GLN 180 186 186 GLN GLN A . n A 1 181 GLU 181 187 187 GLU GLU A . n A 1 182 LYS 182 188 188 LYS LYS A . n A 1 183 PRO 183 189 189 PRO PRO A . n A 1 184 VAL 184 190 190 VAL VAL A . n A 1 185 ALA 185 191 191 ALA ALA A . n A 1 186 TRP 186 192 192 TRP TRP A . n A 1 187 LEU 187 193 193 LEU LEU A . n A 1 188 SER 188 194 194 SER SER A . n A 1 189 SER 189 195 195 SER SER A . n A 1 190 VAL 190 196 196 VAL VAL A . n A 1 191 PRO 191 197 197 PRO PRO A . n A 1 192 SER 192 198 198 SER SER A . n A 1 193 SER 193 199 199 SER SER A . n A 1 194 ALA 194 200 200 ALA ALA A . n A 1 195 HIS 195 201 201 HIS HIS A . n A 1 196 GLY 196 202 202 GLY GLY A . n A 1 197 HIS 197 203 203 HIS HIS A . n A 1 198 ARG 198 204 204 ARG ARG A . n A 1 199 GLN 199 205 205 GLN GLN A . n A 1 200 LEU 200 206 206 LEU LEU A . n A 1 201 VAL 201 207 207 VAL VAL A . n A 1 202 CYS 202 208 208 CYS CYS A . n A 1 203 HIS 203 209 209 HIS HIS A . n A 1 204 VAL 204 210 210 VAL VAL A . n A 1 205 SER 205 211 211 SER SER A . n A 1 206 GLY 206 212 212 GLY GLY A . n A 1 207 PHE 207 213 213 PHE PHE A . n A 1 208 TYR 208 214 214 TYR TYR A . n A 1 209 PRO 209 215 215 PRO PRO A . n A 1 210 LYS 210 216 216 LYS LYS A . n A 1 211 PRO 211 217 217 PRO PRO A . n A 1 212 VAL 212 218 218 VAL VAL A . n A 1 213 TRP 213 219 219 TRP TRP A . n A 1 214 VAL 214 220 220 VAL VAL A . n A 1 215 MET 215 221 221 MET MET A . n A 1 216 TRP 216 222 222 TRP TRP A . n A 1 217 MET 217 223 223 MET MET A . n A 1 218 ARG 218 224 224 ARG ARG A . n A 1 219 GLY 219 225 225 GLY GLY A . n A 1 220 ASP 220 226 226 ASP ASP A . n A 1 221 GLN 221 227 227 GLN GLN A . n A 1 222 GLU 222 228 228 GLU GLU A . n A 1 223 GLN 223 229 229 GLN GLN A . n A 1 224 GLN 224 230 230 GLN GLN A . n A 1 225 GLY 225 231 231 GLY GLY A . n A 1 226 THR 226 232 232 THR THR A . n A 1 227 HIS 227 233 233 HIS HIS A . n A 1 228 ARG 228 234 234 ARG ARG A . n A 1 229 GLY 229 235 235 GLY GLY A . n A 1 230 ASP 230 236 236 ASP ASP A . n A 1 231 PHE 231 237 237 PHE PHE A . n A 1 232 LEU 232 238 238 LEU LEU A . n A 1 233 PRO 233 239 239 PRO PRO A . n A 1 234 ASN 234 240 240 ASN ASN A . n A 1 235 ALA 235 241 241 ALA ALA A . n A 1 236 ASP 236 242 242 ASP ASP A . n A 1 237 GLU 237 243 243 GLU GLU A . n A 1 238 THR 238 244 244 THR THR A . n A 1 239 TRP 239 245 245 TRP TRP A . n A 1 240 TYR 240 246 246 TYR TYR A . n A 1 241 LEU 241 247 247 LEU LEU A . n A 1 242 GLN 242 248 248 GLN GLN A . n A 1 243 ALA 243 249 249 ALA ALA A . n A 1 244 THR 244 250 250 THR THR A . n A 1 245 LEU 245 251 251 LEU LEU A . n A 1 246 ASP 246 252 252 ASP ASP A . n A 1 247 VAL 247 253 253 VAL VAL A . n A 1 248 GLU 248 254 254 GLU GLU A . n A 1 249 ALA 249 255 255 ALA ALA A . n A 1 250 GLY 250 256 256 GLY GLY A . n A 1 251 GLU 251 257 257 GLU GLU A . n A 1 252 GLU 252 258 258 GLU GLU A . n A 1 253 ALA 253 259 259 ALA ALA A . n A 1 254 GLY 254 260 260 GLY GLY A . n A 1 255 LEU 255 261 261 LEU LEU A . n A 1 256 ALA 256 262 262 ALA ALA A . n A 1 257 CYS 257 263 263 CYS CYS A . n A 1 258 ARG 258 264 264 ARG ARG A . n A 1 259 VAL 259 265 265 VAL VAL A . n A 1 260 LYS 260 266 266 LYS LYS A . n A 1 261 HIS 261 267 267 HIS HIS A . n A 1 262 SER 262 268 268 SER SER A . n A 1 263 SER 263 269 269 SER SER A . n A 1 264 LEU 264 270 270 LEU LEU A . n A 1 265 GLY 265 271 271 GLY GLY A . n A 1 266 GLY 266 272 272 GLY GLY A . n A 1 267 GLN 267 273 273 GLN GLN A . n A 1 268 ASP 268 274 274 ASP ASP A . n A 1 269 ILE 269 275 275 ILE ILE A . n A 1 270 ILE 270 276 276 ILE ILE A . n A 1 271 LEU 271 277 277 LEU LEU A . n A 1 272 TYR 272 278 278 TYR TYR A . n A 1 273 TRP 273 279 279 TRP TRP A . n B 2 1 ILE 1 1 1 ILE ILE B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 LYS 3 3 3 LYS LYS B . n B 2 4 THR 4 4 4 THR THR B . n B 2 5 PRO 5 5 5 PRO PRO B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 ILE 7 7 7 ILE ILE B . n B 2 8 GLN 8 8 8 GLN GLN B . n B 2 9 VAL 9 9 9 VAL VAL B . n B 2 10 TYR 10 10 10 TYR TYR B . n B 2 11 SER 11 11 11 SER SER B . n B 2 12 ARG 12 12 12 ARG ARG B . n B 2 13 HIS 13 13 13 HIS HIS B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 PRO 15 15 15 PRO PRO B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 ASN 17 17 17 ASN ASN B . n B 2 18 GLY 18 18 18 GLY GLY B . n B 2 19 LYS 19 19 19 LYS LYS B . n B 2 20 PRO 20 20 20 PRO PRO B . n B 2 21 ASN 21 21 21 ASN ASN B . n B 2 22 ILE 22 22 22 ILE ILE B . n B 2 23 LEU 23 23 23 LEU LEU B . n B 2 24 ASN 24 24 24 ASN ASN B . n B 2 25 CYS 25 25 25 CYS CYS B . n B 2 26 TYR 26 26 26 TYR TYR B . n B 2 27 VAL 27 27 27 VAL VAL B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 GLN 29 29 29 GLN GLN B . n B 2 30 PHE 30 30 30 PHE PHE B . n B 2 31 HIS 31 31 31 HIS HIS B . n B 2 32 PRO 32 32 32 PRO PRO B . n B 2 33 PRO 33 33 33 PRO PRO B . n B 2 34 HIS 34 34 34 HIS HIS B . n B 2 35 ILE 35 35 35 ILE ILE B . n B 2 36 GLU 36 36 36 GLU GLU B . n B 2 37 ILE 37 37 37 ILE ILE B . n B 2 38 GLN 38 38 38 GLN GLN B . n B 2 39 MET 39 39 39 MET MET B . n B 2 40 LEU 40 40 40 LEU LEU B . n B 2 41 LYS 41 41 41 LYS LYS B . n B 2 42 ASN 42 42 42 ASN ASN B . n B 2 43 GLY 43 43 43 GLY GLY B . n B 2 44 LYS 44 44 44 LYS LYS B . n B 2 45 LYS 45 45 45 LYS LYS B . n B 2 46 ILE 46 46 46 ILE ILE B . n B 2 47 PRO 47 47 47 PRO PRO B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 VAL 49 49 49 VAL VAL B . n B 2 50 GLU 50 50 50 GLU GLU B . n B 2 51 MET 51 51 51 MET MET B . n B 2 52 SER 52 52 52 SER SER B . n B 2 53 ASP 53 53 53 ASP ASP B . n B 2 54 MET 54 54 54 MET MET B . n B 2 55 SER 55 55 55 SER SER B . n B 2 56 PHE 56 56 56 PHE PHE B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 LYS 58 58 58 LYS LYS B . n B 2 59 ASP 59 59 59 ASP ASP B . n B 2 60 TRP 60 60 60 TRP TRP B . n B 2 61 SER 61 61 61 SER SER B . n B 2 62 PHE 62 62 62 PHE PHE B . n B 2 63 TYR 63 63 63 TYR TYR B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 LEU 65 65 65 LEU LEU B . n B 2 66 ALA 66 66 66 ALA ALA B . n B 2 67 HIS 67 67 67 HIS HIS B . n B 2 68 THR 68 68 68 THR THR B . n B 2 69 GLU 69 69 69 GLU GLU B . n B 2 70 PHE 70 70 70 PHE PHE B . n B 2 71 THR 71 71 71 THR THR B . n B 2 72 PRO 72 72 72 PRO PRO B . n B 2 73 THR 73 73 73 THR THR B . n B 2 74 GLU 74 74 74 GLU GLU B . n B 2 75 THR 75 75 75 THR THR B . n B 2 76 ASP 76 76 76 ASP ASP B . n B 2 77 THR 77 77 77 THR THR B . n B 2 78 TYR 78 78 78 TYR TYR B . n B 2 79 ALA 79 79 79 ALA ALA B . n B 2 80 CYS 80 80 80 CYS CYS B . n B 2 81 ARG 81 81 81 ARG ARG B . n B 2 82 VAL 82 82 82 VAL VAL B . n B 2 83 LYS 83 83 83 LYS LYS B . n B 2 84 HIS 84 84 84 HIS HIS B . n B 2 85 ASP 85 85 85 ASP ASP B . n B 2 86 SER 86 86 86 SER SER B . n B 2 87 MET 87 87 87 MET MET B . n B 2 88 ALA 88 88 88 ALA ALA B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 PRO 90 90 90 PRO PRO B . n B 2 91 LYS 91 91 91 LYS LYS B . n B 2 92 THR 92 92 92 THR THR B . n B 2 93 VAL 93 93 93 VAL VAL B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 TRP 95 95 95 TRP TRP B . n B 2 96 ASP 96 96 96 ASP ASP B . n B 2 97 ARG 97 97 97 ARG ARG B . n B 2 98 ASP 98 98 98 ASP ASP B . n B 2 99 MET 99 99 99 MET MET B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 14 A ASN 20 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 36 A ASN 42 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 159 A ASN 165 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7160 ? 1 MORE 5 ? 1 'SSA (A^2)' 19160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 MOLREP phasing . ? 3 REFMAC refinement 5.2 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 289 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 293 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 34 ? ? CG A ASP 34 ? ? OD2 A ASP 34 ? ? 124.32 118.30 6.02 0.90 N 2 1 CB B ASP 98 ? ? CG B ASP 98 ? ? OD2 B ASP 98 ? ? 123.92 118.30 5.62 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 20 ? ? -127.54 -145.81 2 1 SER A 89 ? ? 47.70 -144.53 3 1 LYS A 91 ? ? 178.84 107.58 4 1 LEU A 116 ? ? -161.54 115.23 5 1 VAL A 125 ? ? -130.99 -36.81 6 1 ASP A 166 ? ? -105.64 -66.49 7 1 HIS B 31 ? ? -175.41 136.46 8 1 LYS B 48 ? ? -95.30 30.49 9 1 TRP B 60 ? ? 72.48 -15.88 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 89 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 90 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 145.34 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A NAG 280 ? 'WRONG HAND' . 2 1 C1 ? A MAN 284 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 93 ? A ASP 87 2 1 Y 1 A TYR 94 ? A TYR 88 3 1 Y 1 A PRO 95 ? A PRO 89 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 N-ACETYL-D-GLUCOSAMINE NAG 4 ALPHA-L-FUCOSE FUC 5 ALPHA-D-MANNOSE MAN 6 '7-[(DODECANOYLOXY)METHYL]-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-3,5,8-TRIOXA-4-PHOSPHADOTRIACONTAN-1-AMINIUM 4-OXIDE' PC6 7 GLYCEROL GOL 8 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 280 1 NAG NAG A . D 4 FUC 2 281 13 FUC FUC A . E 3 NAG 1 2 2 NAG NAG A . F 3 NAG 1 282 3 NAG NAG A . G 3 NAG 2 283 31 NAG NAG A . H 5 MAN 3 284 32 MAN MAN A . I 5 MAN 4 285 33 MAN MAN A . J 5 MAN 5 286 34 MAN MAN A . K 4 FUC 6 287 35 FUC FUC A . L 6 PC6 1 1 1 PC6 PC6 A . M 7 GOL 1 2002 2002 GOL GOL B . N 8 HOH 1 288 3 HOH HOH A . N 8 HOH 2 289 6 HOH HOH A . N 8 HOH 3 290 8 HOH HOH A . N 8 HOH 4 291 12 HOH HOH A . N 8 HOH 5 292 18 HOH HOH A . N 8 HOH 6 293 20 HOH HOH A . N 8 HOH 7 294 22 HOH HOH A . N 8 HOH 8 295 24 HOH HOH A . N 8 HOH 9 296 28 HOH HOH A . N 8 HOH 10 297 30 HOH HOH A . N 8 HOH 11 298 31 HOH HOH A . N 8 HOH 12 299 32 HOH HOH A . N 8 HOH 13 300 36 HOH HOH A . N 8 HOH 14 301 37 HOH HOH A . N 8 HOH 15 302 38 HOH HOH A . N 8 HOH 16 303 45 HOH HOH A . N 8 HOH 17 304 48 HOH HOH A . N 8 HOH 18 305 49 HOH HOH A . N 8 HOH 19 306 50 HOH HOH A . N 8 HOH 20 307 51 HOH HOH A . N 8 HOH 21 308 52 HOH HOH A . N 8 HOH 22 309 53 HOH HOH A . N 8 HOH 23 310 54 HOH HOH A . N 8 HOH 24 311 55 HOH HOH A . N 8 HOH 25 312 57 HOH HOH A . N 8 HOH 26 313 58 HOH HOH A . N 8 HOH 27 314 59 HOH HOH A . N 8 HOH 28 315 61 HOH HOH A . N 8 HOH 29 316 63 HOH HOH A . N 8 HOH 30 317 66 HOH HOH A . N 8 HOH 31 318 67 HOH HOH A . N 8 HOH 32 319 68 HOH HOH A . N 8 HOH 33 320 69 HOH HOH A . O 8 HOH 1 2003 2 HOH HOH B . O 8 HOH 2 2004 4 HOH HOH B . O 8 HOH 3 2005 13 HOH HOH B . O 8 HOH 4 2006 15 HOH HOH B . O 8 HOH 5 2007 17 HOH HOH B . O 8 HOH 6 2008 21 HOH HOH B . O 8 HOH 7 2009 25 HOH HOH B . O 8 HOH 8 2010 27 HOH HOH B . O 8 HOH 9 2011 29 HOH HOH B . O 8 HOH 10 2012 33 HOH HOH B . O 8 HOH 11 2013 35 HOH HOH B . O 8 HOH 12 2014 40 HOH HOH B . O 8 HOH 13 2015 41 HOH HOH B . O 8 HOH 14 2016 46 HOH HOH B . O 8 HOH 15 2017 56 HOH HOH B . O 8 HOH 16 2018 62 HOH HOH B . O 8 HOH 17 2019 64 HOH HOH B . #