HEADER SUGAR BINDING PROTEIN 26-APR-05 1ZHQ TITLE CRYSTAL STRUCTURE OF APO MVL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN-BINDING LECTIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: MVL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROCYSTIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 44822; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1, MVL, CYANOBACTERIA, CARBOHYDRATE BINDING, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.C.WILLIAMS,J.Y.LEE,M.CAI,C.A.BEWLEY,G.M.CLORE REVDAT 4 14-FEB-24 1ZHQ 1 REMARK REVDAT 3 24-FEB-09 1ZHQ 1 VERSN REVDAT 2 16-AUG-05 1ZHQ 1 JRNL REVDAT 1 07-JUN-05 1ZHQ 0 JRNL AUTH D.C.WILLIAMS,J.Y.LEE,M.CAI,C.A.BEWLEY,G.M.CLORE JRNL TITL CRYSTAL STRUCTURES OF THE HIV-1 INHIBITORY CYANOBACTERIAL JRNL TITL 2 PROTEIN MVL FREE AND BOUND TO MAN3GLCNAC2: STRUCTURAL BASIS JRNL TITL 3 FOR SPECIFICITY AND HIGH-AFFINITY BINDING TO THE CORE JRNL TITL 4 PENTASACCHARIDE FROM N-LINKED OLIGOMANNOSIDE. JRNL REF J.BIOL.CHEM. V. 280 29269 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15937331 JRNL DOI 10.1074/JBC.M504642200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 460807.830 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 68726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6949 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9513 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1015 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 865 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.48000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.550 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.930 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 62.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : EGL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : EGL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, PH 4.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.43650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 43 27.39 48.64 REMARK 500 ALA B 44 -38.47 -144.06 REMARK 500 ALA C 44 -31.94 -144.13 REMARK 500 VAL C 103 -55.69 -128.40 REMARK 500 ALA D 44 -29.65 -144.82 REMARK 500 VAL D 103 -47.37 -130.05 REMARK 500 SER E 43 16.67 55.57 REMARK 500 ALA E 44 -30.84 -138.42 REMARK 500 VAL E 103 -47.72 -130.73 REMARK 500 ALA G 44 -32.24 -138.15 REMARK 500 VAL G 103 -31.78 -134.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO G 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1013 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZHS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MVL BOUND TO MAN3GLCNAC2 DBREF 1ZHQ A 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ B 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ C 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ D 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ E 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ F 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ G 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 DBREF 1ZHQ H 1 113 UNP Q9RHG4 Q9RHG4_9CHRO 2 114 SEQRES 1 A 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 A 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 A 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 A 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 A 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 A 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 A 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 A 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 A 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 B 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 B 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 B 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 B 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 B 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 B 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 B 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 B 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 B 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 C 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 C 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 C 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 C 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 C 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 C 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 C 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 C 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 C 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 D 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 D 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 D 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 D 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 D 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 D 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 D 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 D 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 D 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 E 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 E 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 E 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 E 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 E 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 E 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 E 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 E 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 E 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 F 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 F 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 F 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 F 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 F 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 F 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 F 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 F 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 F 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 G 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 G 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 G 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 G 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 G 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 G 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 G 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 G 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 G 113 SER VAL ILE GLN ILE LYS TYR THR PHE SEQRES 1 H 113 ALA SER TYR LYS VAL ASN ILE PRO ALA GLY PRO LEU TRP SEQRES 2 H 113 SER ASN ALA GLU ALA GLN GLN VAL GLY PRO LYS ILE ALA SEQRES 3 H 113 ALA ALA HIS GLN GLY ASN PHE THR GLY GLN TRP THR THR SEQRES 4 H 113 VAL VAL GLU SER ALA MET SER VAL VAL GLU VAL GLU LEU SEQRES 5 H 113 GLN VAL GLU ASN THR GLY ILE HIS GLU PHE LYS THR ASP SEQRES 6 H 113 VAL LEU ALA GLY PRO LEU TRP SER ASN ASP GLU ALA GLN SEQRES 7 H 113 LYS LEU GLY PRO GLN ILE ALA ALA SER TYR GLY ALA GLU SEQRES 8 H 113 PHE THR GLY GLN TRP ARG THR ILE VAL GLU GLY VAL MET SEQRES 9 H 113 SER VAL ILE GLN ILE LYS TYR THR PHE HET PO4 A 901 5 HET EDO A1004 4 HET PO4 B 902 5 HET PO4 B 903 5 HET PO4 B 904 5 HET EDO B1005 4 HET EDO B1009 4 HET EDO B1012 4 HET EDO B1013 4 HET EDO C1006 4 HET PO4 D 905 5 HET EDO D1007 4 HET EDO E1001 4 HET EDO E1003 4 HET PO4 F 906 5 HET EDO F1002 4 HET EDO F1008 4 HET EDO G1010 4 HET EDO H1011 4 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 9 PO4 6(O4 P 3-) FORMUL 10 EDO 13(C2 H6 O2) FORMUL 28 HOH *865(H2 O) HELIX 1 1 SER A 14 HIS A 29 1 16 HELIX 2 2 SER A 73 SER A 87 1 15 HELIX 3 3 SER B 14 HIS B 29 1 16 HELIX 4 4 SER B 73 SER B 87 1 15 HELIX 5 5 SER C 14 HIS C 29 1 16 HELIX 6 6 SER C 73 SER C 87 1 15 HELIX 7 7 SER D 14 HIS D 29 1 16 HELIX 8 8 SER D 73 SER D 87 1 15 HELIX 9 9 SER E 14 HIS E 29 1 16 HELIX 10 10 SER E 73 SER E 87 1 15 HELIX 11 11 SER F 14 HIS F 29 1 16 HELIX 12 12 SER F 73 SER F 87 1 15 HELIX 13 13 SER G 14 HIS G 29 1 16 HELIX 14 14 SER G 73 SER G 87 1 15 HELIX 15 15 SER H 14 HIS H 29 1 16 HELIX 16 16 SER H 73 SER H 87 1 15 SHEET 1 A 3 SER A 2 GLY A 10 0 SHEET 2 A 3 MET A 45 GLN A 53 -1 O VAL A 50 N VAL A 5 SHEET 3 A 3 ASN A 32 VAL A 41 -1 N THR A 38 O VAL A 47 SHEET 1 B 3 HIS A 60 GLY A 69 0 SHEET 2 B 3 MET A 104 PHE A 113 -1 O TYR A 111 N PHE A 62 SHEET 3 B 3 GLU A 91 VAL A 100 -1 N GLN A 95 O GLN A 108 SHEET 1 C 3 SER B 2 GLY B 10 0 SHEET 2 C 3 MET B 45 GLN B 53 -1 O LEU B 52 N TYR B 3 SHEET 3 C 3 ASN B 32 VAL B 41 -1 N ASN B 32 O GLU B 51 SHEET 1 D 3 HIS B 60 GLY B 69 0 SHEET 2 D 3 MET B 104 PHE B 113 -1 O ILE B 109 N THR B 64 SHEET 3 D 3 GLU B 91 VAL B 100 -1 N ARG B 97 O VAL B 106 SHEET 1 E 3 SER C 2 GLY C 10 0 SHEET 2 E 3 MET C 45 GLN C 53 -1 O LEU C 52 N TYR C 3 SHEET 3 E 3 ASN C 32 VAL C 41 -1 N THR C 38 O VAL C 47 SHEET 1 F 3 HIS C 60 GLY C 69 0 SHEET 2 F 3 MET C 104 PHE C 113 -1 O ILE C 109 N THR C 64 SHEET 3 F 3 GLU C 91 VAL C 100 -1 N ARG C 97 O VAL C 106 SHEET 1 G 3 SER D 2 GLY D 10 0 SHEET 2 G 3 MET D 45 GLN D 53 -1 O LEU D 52 N TYR D 3 SHEET 3 G 3 ASN D 32 VAL D 41 -1 N THR D 38 O VAL D 47 SHEET 1 H 3 HIS D 60 GLY D 69 0 SHEET 2 H 3 MET D 104 PHE D 113 -1 O ILE D 109 N THR D 64 SHEET 3 H 3 GLU D 91 VAL D 100 -1 N ARG D 97 O VAL D 106 SHEET 1 I 3 SER E 2 GLY E 10 0 SHEET 2 I 3 MET E 45 GLN E 53 -1 O LEU E 52 N TYR E 3 SHEET 3 I 3 ASN E 32 VAL E 41 -1 N ASN E 32 O GLU E 51 SHEET 1 J 3 HIS E 60 GLY E 69 0 SHEET 2 J 3 MET E 104 PHE E 113 -1 O TYR E 111 N PHE E 62 SHEET 3 J 3 GLU E 91 VAL E 100 -1 N GLU E 91 O LYS E 110 SHEET 1 K 3 SER F 2 GLY F 10 0 SHEET 2 K 3 MET F 45 GLN F 53 -1 O LEU F 52 N TYR F 3 SHEET 3 K 3 ASN F 32 VAL F 41 -1 N THR F 38 O VAL F 47 SHEET 1 L 3 HIS F 60 GLY F 69 0 SHEET 2 L 3 MET F 104 PHE F 113 -1 O TYR F 111 N PHE F 62 SHEET 3 L 3 GLU F 91 VAL F 100 -1 N GLN F 95 O GLN F 108 SHEET 1 M 3 SER G 2 GLY G 10 0 SHEET 2 M 3 MET G 45 GLN G 53 -1 O LEU G 52 N TYR G 3 SHEET 3 M 3 ASN G 32 VAL G 41 -1 N ASN G 32 O GLU G 51 SHEET 1 N 3 HIS G 60 GLY G 69 0 SHEET 2 N 3 MET G 104 PHE G 113 -1 O ILE G 109 N THR G 64 SHEET 3 N 3 GLU G 91 VAL G 100 -1 N ARG G 97 O VAL G 106 SHEET 1 O 3 SER H 2 GLY H 10 0 SHEET 2 O 3 MET H 45 GLN H 53 -1 O VAL H 48 N ILE H 7 SHEET 3 O 3 ASN H 32 VAL H 41 -1 N ASN H 32 O GLU H 51 SHEET 1 P 3 HIS H 60 GLY H 69 0 SHEET 2 P 3 MET H 104 PHE H 113 -1 O TYR H 111 N PHE H 62 SHEET 3 P 3 GLU H 91 VAL H 100 -1 N ARG H 97 O VAL H 106 SITE 1 AC1 3 LYS A 63 LYS A 110 HOH A1060 SITE 1 AC2 5 HOH A1041 GLU B 76 LYS B 79 LEU B 80 SITE 2 AC2 5 HOH B1116 SITE 1 AC3 2 GLU B 61 HOH B1065 SITE 1 AC4 4 LYS B 63 LYS B 110 HOH B1103 LYS E 4 SITE 1 AC5 2 GLU D 91 LYS D 110 SITE 1 AC6 8 ASP F 65 ARG F 97 GLN F 108 TRP H 37 SITE 2 AC6 8 THR H 38 HOH H1016 HOH H1021 HOH H1093 SITE 1 AC7 6 GLU E 55 ASN E 56 GLY E 89 ALA E 90 SITE 2 AC7 6 HOH E1047 HOH E1057 SITE 1 AC8 5 HIS F 29 SER F 87 TYR F 88 HOH F1015 SITE 2 AC8 5 HOH F1018 SITE 1 AC9 5 HIS E 29 SER E 87 TYR E 88 HOH E1005 SITE 2 AC9 5 HOH E1012 SITE 1 BC1 5 HIS A 29 SER A 87 TYR A 88 HOH A1013 SITE 2 BC1 5 HOH A1025 SITE 1 BC2 5 PRO A 8 HIS B 29 SER B 87 HOH B1015 SITE 2 BC2 5 HOH B1028 SITE 1 BC3 5 HIS C 29 SER C 87 TYR C 88 HOH C1010 SITE 2 BC3 5 HOH C1015 SITE 1 BC4 7 PRO C 8 HIS D 29 LEU D 52 SER D 87 SITE 2 BC4 7 TYR D 88 HOH D1021 HOH D1025 SITE 1 BC5 6 VAL F 54 GLU F 55 ASN F 56 GLY F 89 SITE 2 BC5 6 ALA F 90 HOH F1017 SITE 1 BC6 5 ASP B 65 TRP B 96 ARG B 97 GLN E 36 SITE 2 BC6 5 TRP E 37 SITE 1 BC7 6 HIS G 29 LEU G 52 SER G 87 HOH G1014 SITE 2 BC7 6 HOH G1021 HOH G1099 SITE 1 BC8 9 LEU G 67 TYR G 88 ALA H 28 HIS H 29 SITE 2 BC8 9 GLN H 30 TYR H 88 TYR H 111 HOH H1018 SITE 3 BC8 9 HOH H1019 SITE 1 BC9 3 ARG B 97 HOH B1109 ASN E 15 SITE 1 CC1 4 PRO B 70 LEU B 71 GLU B 101 GLY B 102 CRYST1 76.184 74.873 83.901 90.00 100.77 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013126 0.000000 0.002498 0.00000 SCALE2 0.000000 0.013356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012133 0.00000