HEADER HYDROLASE 28-APR-05 1ZJC TITLE AMINOPEPTIDASE S FROM S. AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOPEPTIDASE AMPS; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: AMPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14 KEYWDS AMINOPEPTIDASE, METALLOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.ODINTSOV,I.SABALA,G.BOURENKOV,V.RYBIN,M.BOCHTLER REVDAT 7 03-APR-24 1ZJC 1 REMARK REVDAT 6 14-FEB-24 1ZJC 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 1ZJC 1 REMARK REVDAT 4 13-JUL-11 1ZJC 1 VERSN REVDAT 3 24-FEB-09 1ZJC 1 VERSN REVDAT 2 02-AUG-05 1ZJC 1 JRNL REVDAT 1 07-JUN-05 1ZJC 0 JRNL AUTH S.G.ODINTSOV,I.SABALA,G.BOURENKOV,V.RYBIN,M.BOCHTLER JRNL TITL STAPHYLOCOCCUS AUREUS AMINOPEPTIDASE S IS A FOUNDING MEMBER JRNL TITL 2 OF A NEW PEPTIDASE CLAN. JRNL REF J.BIOL.CHEM. V. 280 27792 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15932875 JRNL DOI 10.1074/JBC.M502023200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 40678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3367 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2941 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4564 ; 1.756 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6868 ; 3.784 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3804 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 685 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3216 ; 0.284 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1642 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2055 ; 1.134 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3315 ; 2.050 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1312 ; 3.451 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1249 ; 5.623 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40684 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : 0.39600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: AUTHORS' CURRENT, UNPUBLISHED STRUCTURE OF A REMARK 200 THERMOPHILIC HOMOLOGUE OF AMPS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES/NAOH, AMMONIUM SULFATE, PEG 6K, REMARK 280 PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.44250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.44250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.92900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.92900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.44250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.92900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.44250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.92900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 1 CHAIN(S). THE AUTHORS STATE REMARK 300 THAT THE BIOLOGICAL UNIT IS A DIMER, BUT ASSIGNMENT REMARK 300 OF THE CORRECT DIMER IS UNCERTAIN. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.18100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.44250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CD GLU A 46 OE2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 173 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 220 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 281 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 306 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 315 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 390 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 83.33 74.90 REMARK 500 SER A 105 17.55 -159.36 REMARK 500 ASP A 233 -148.06 -125.20 REMARK 500 LYS A 241 14.65 -149.05 REMARK 500 GLU A 242 -129.74 -111.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THERE IS A MIXTURE OF METAL IONS IN THE CRYSTAL. FOR REMARK 600 SIMPLICITY, THE AUTHORS HAVE CALLED THE IONS COBALT REMARK 600 IONS, BUT THEY STATE THAT ZINC IS PRESENT AS WELL REMARK 600 (SEE DETAILS IN THE PUBLICATION). REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 253 OE1 REMARK 620 2 GLU A 253 OE2 56.6 REMARK 620 3 GLU A 319 OE2 99.5 154.5 REMARK 620 4 HIS A 348 NE2 95.6 98.0 92.7 REMARK 620 5 HOH A 533 O 86.6 84.1 85.8 177.6 REMARK 620 6 HOH A 883 O 154.0 99.6 101.7 98.2 80.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 319 OE1 REMARK 620 2 TYR A 355 OH 93.9 REMARK 620 3 HIS A 381 NE2 91.1 83.9 REMARK 620 4 ASP A 383 OD1 93.6 171.3 91.5 REMARK 620 5 HOH A 883 O 96.2 94.8 172.7 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 503 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 343 OE1 REMARK 620 2 ASP A 383 OD2 66.1 REMARK 620 3 HOH A 648 O 122.7 171.0 REMARK 620 4 HOH A 695 O 96.7 96.0 85.4 REMARK 620 5 HOH A 883 O 85.7 88.4 90.1 175.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 503 DBREF 1ZJC A 1 415 UNP Q8NVU1 Q8NVU1_STAAW 1 415 SEQADV 1ZJC GLY A -2 UNP Q8NVU1 CLONING ARTIFACT SEQADV 1ZJC SER A -1 UNP Q8NVU1 CLONING ARTIFACT SEQADV 1ZJC HIS A 0 UNP Q8NVU1 CLONING ARTIFACT SEQRES 1 A 418 GLY SER HIS MET THR ASN TYR LYS GLU LYS LEU GLN GLN SEQRES 2 A 418 TYR ALA GLU LEU LEU VAL LYS VAL GLY MET ASN VAL GLN SEQRES 3 A 418 PRO LYS GLN PRO VAL PHE ILE ARG SER SER VAL GLU THR SEQRES 4 A 418 LEU GLU LEU THR HIS LEU ILE VAL GLU GLU ALA TYR HIS SEQRES 5 A 418 CYS GLY ALA SER ASP VAL ARG VAL VAL TYR SER ASP PRO SEQRES 6 A 418 THR LEU LYS ARG LEU LYS PHE GLU ASN GLU SER VAL GLU SEQRES 7 A 418 HIS PHE ALA ASN HIS GLU ILE LYS SER TYR ASP VAL GLU SEQRES 8 A 418 ALA ARG MET ASP TYR VAL LYS ARG GLY ALA ALA ASN LEU SEQRES 9 A 418 ALA LEU ILE SER GLU ASP PRO ASP LEU MET ASP GLY ILE SEQRES 10 A 418 ASP SER GLN LYS LEU GLN ALA PHE GLN GLN GLN ASN ALA SEQRES 11 A 418 ARG ALA PHE LYS GLY TYR MET GLU SER VAL GLN LYS ASN SEQRES 12 A 418 GLN PHE PRO TRP VAL VAL ALA ALA PHE PRO SER LYS ALA SEQRES 13 A 418 TRP ALA LYS ARG VAL TYR PRO GLU LEU SER VAL GLU GLU SEQRES 14 A 418 ALA TYR ILE LYS PHE ILE ASP GLU VAL PHE ASP ILE VAL SEQRES 15 A 418 ARG ILE ASP GLY ASN ASP PRO VAL GLU ASN TRP ARG GLN SEQRES 16 A 418 HIS ILE ALA ASN LEU SER VAL TYR ALA GLN LYS LEU GLN SEQRES 17 A 418 GLN LYS ASN TYR HIS ALA LEU HIS TYR VAL SER GLU GLY SEQRES 18 A 418 THR ASP LEU THR VAL GLY LEU ALA LYS ASN HIS ILE TRP SEQRES 19 A 418 GLU ASP ALA THR SER TYR VAL ASN GLY LYS GLU GLN ALA SEQRES 20 A 418 PHE ILE ALA ASN ILE PRO THR GLU GLU VAL PHE THR ALA SEQRES 21 A 418 PRO ASP ARG ASN ARG VAL ASP GLY TYR VAL THR ASN LYS SEQRES 22 A 418 LEU PRO LEU SER TYR ASN GLY THR ILE ILE ASP GLN PHE SEQRES 23 A 418 LYS LEU MET PHE LYS ASP GLY GLU ILE ILE ASP PHE SER SEQRES 24 A 418 ALA GLU LYS GLY GLU ALA VAL LEU LYS ASP LEU ILE ASN SEQRES 25 A 418 THR ASP GLU GLY SER ARG ARG LEU GLY GLU VAL ALA LEU SEQRES 26 A 418 VAL PRO ASP ASP SER PRO ILE SER ASN ARG ASN THR ILE SEQRES 27 A 418 PHE TYR ASN THR LEU PHE ASP GLU ASN ALA ALA CYS HIS SEQRES 28 A 418 LEU ALA ILE GLY SER ALA TYR ALA PHE ASN ILE GLN GLY SEQRES 29 A 418 GLY THR GLU MET THR VAL GLU GLU LYS ILE ALA SER GLY SEQRES 30 A 418 LEU ASN ASP SER ASN VAL HIS VAL ASP PHE MET ILE GLY SEQRES 31 A 418 SER SER ASP LEU THR ILE TYR GLY ILE PHE GLU ASP GLY SEQRES 32 A 418 SER LYS GLU LEU VAL PHE GLU ASN GLY ASN TRP ALA SER SEQRES 33 A 418 THR PHE HET CO A 501 1 HET CO A 502 1 HET CO A 503 1 HETNAM CO COBALT (II) ION FORMUL 2 CO 3(CO 2+) FORMUL 5 HOH *380(H2 O) HELIX 1 1 ASN A 3 VAL A 18 1 16 HELIX 2 2 THR A 36 CYS A 50 1 15 HELIX 3 3 ASP A 61 GLU A 72 1 12 HELIX 4 4 SER A 73 HIS A 80 1 8 HELIX 5 5 LYS A 83 ARG A 96 1 14 HELIX 6 6 ASP A 115 PHE A 130 1 16 HELIX 7 7 PHE A 130 LYS A 139 1 10 HELIX 8 8 SER A 151 TYR A 159 1 9 HELIX 9 9 SER A 163 VAL A 179 1 17 HELIX 10 10 ASP A 185 ASN A 208 1 24 HELIX 11 11 ASN A 239 LYS A 241 5 3 HELIX 12 12 GLY A 300 ASN A 309 1 10 HELIX 13 13 ASP A 311 ARG A 315 5 5 HELIX 14 14 ILE A 329 ASN A 333 5 5 HELIX 15 15 ASN A 338 GLU A 343 1 6 HELIX 16 16 TYR A 355 ILE A 359 5 5 HELIX 17 17 GLY A 361 MET A 365 5 5 HELIX 18 18 THR A 366 GLY A 374 1 9 SHEET 1 A 4 VAL A 55 SER A 60 0 SHEET 2 A 4 VAL A 28 SER A 33 1 N ILE A 30 O ARG A 56 SHEET 3 A 4 ALA A 99 ILE A 104 1 O LEU A 103 N ARG A 31 SHEET 4 A 4 TRP A 144 ALA A 148 1 O ALA A 147 N ILE A 104 SHEET 1 B 3 LEU A 273 TYR A 275 0 SHEET 2 B 3 THR A 278 LYS A 288 -1 O ILE A 280 N LEU A 273 SHEET 3 B 3 GLU A 291 LYS A 299 -1 O ASP A 294 N MET A 286 SHEET 1 C 8 LEU A 273 TYR A 275 0 SHEET 2 C 8 THR A 278 LYS A 288 -1 O ILE A 280 N LEU A 273 SHEET 3 C 8 PRO A 258 THR A 268 -1 N VAL A 267 O LEU A 285 SHEET 4 C 8 THR A 219 LEU A 225 -1 N GLY A 224 O ARG A 262 SHEET 5 C 8 ALA A 211 SER A 216 -1 N LEU A 212 O VAL A 223 SHEET 6 C 8 THR A 392 ILE A 396 -1 O ILE A 396 N ALA A 211 SHEET 7 C 8 LYS A 402 GLU A 407 -1 O VAL A 405 N ILE A 393 SHEET 8 C 8 ASN A 410 TRP A 411 -1 O ASN A 410 N GLU A 407 SHEET 1 D 2 THR A 235 TYR A 237 0 SHEET 2 D 2 ALA A 244 ILE A 246 -1 O PHE A 245 N SER A 236 SHEET 1 E 4 VAL A 254 THR A 256 0 SHEET 2 E 4 LEU A 317 LEU A 322 -1 O LEU A 322 N VAL A 254 SHEET 3 E 4 HIS A 348 GLY A 352 -1 O ALA A 350 N GLY A 318 SHEET 4 E 4 HIS A 381 MET A 385 -1 O PHE A 384 N LEU A 349 LINK OE1 GLU A 253 CO CO A 501 1555 1555 2.06 LINK OE2 GLU A 253 CO CO A 501 1555 1555 2.45 LINK OE2 GLU A 319 CO CO A 501 1555 1555 2.03 LINK OE1 GLU A 319 CO CO A 502 1555 1555 2.09 LINK OE1 GLU A 343 CO CO A 503 1555 1555 2.09 LINK NE2 HIS A 348 CO CO A 501 1555 1555 2.19 LINK OH TYR A 355 CO CO A 502 1555 1555 2.53 LINK NE2 HIS A 381 CO CO A 502 1555 1555 2.21 LINK OD1 ASP A 383 CO CO A 502 1555 1555 1.96 LINK OD2 ASP A 383 CO CO A 503 1555 1555 2.15 LINK CO CO A 501 O HOH A 533 1555 1555 2.52 LINK CO CO A 501 O HOH A 883 1555 1555 1.99 LINK CO CO A 502 O HOH A 883 1555 1555 2.19 LINK CO CO A 503 O HOH A 648 1555 1555 2.11 LINK CO CO A 503 O HOH A 695 1555 1555 2.29 LINK CO CO A 503 O HOH A 883 1555 1555 1.95 CISPEP 1 ILE A 249 PRO A 250 0 7.78 SITE 1 AC1 6 GLU A 253 GLU A 319 HIS A 348 CO A 502 SITE 2 AC1 6 HOH A 533 HOH A 883 SITE 1 AC2 7 GLU A 319 TYR A 355 HIS A 381 ASP A 383 SITE 2 AC2 7 CO A 501 CO A 503 HOH A 883 SITE 1 AC3 6 GLU A 343 ASP A 383 CO A 502 HOH A 648 SITE 2 AC3 6 HOH A 695 HOH A 883 CRYST1 70.181 81.858 152.885 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006541 0.00000