HEADER OXIDOREDUCTASE 02-MAY-05 1ZJY TITLE STRUCTURE OF R-SPECIFIC ALCOHOL DEHYDROGENASE (MUTANT G37D) FROM TITLE 2 LACTOBACILLUS BREVIS IN COMPLEX WITH PHENYLETHANOL AND NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-SPECIFIC ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1580; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKK177-3H KEYWDS SHORT CHAIN REDUCTASES/DEHYDROGENASES, MAGNESIUM DEPENDENCE, R- KEYWDS 2 SPECIFIC ALCOHOL DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.H.SCHLIEBEN,K.NIEFIND,J.MULLER,B.RIEBEL,W.HUMMEL,D.SCHOMBURG REVDAT 5 14-FEB-24 1ZJY 1 REMARK REVDAT 4 20-OCT-21 1ZJY 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1ZJY 1 VERSN REVDAT 2 24-FEB-09 1ZJY 1 VERSN REVDAT 1 21-JUN-05 1ZJY 0 JRNL AUTH N.H.SCHLIEBEN,K.NIEFIND,J.MULLER,B.RIEBEL,W.HUMMEL, JRNL AUTH 2 D.SCHOMBURG JRNL TITL ATOMIC RESOLUTION STRUCTURES OF R-SPECIFIC ALCOHOL JRNL TITL 2 DEHYDROGENASE FROM LACTOBACILLUS BREVIS PROVIDE THE JRNL TITL 3 STRUCTURAL BASES OF ITS SUBSTRATE AND COSUBSTRATE JRNL TITL 4 SPECIFICITY JRNL REF J.MOL.BIOL. V. 349 801 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15896805 JRNL DOI 10.1016/J.JMB.2005.04.029 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.NIEFIND,J.MULLER,B.RIEBEL,W.HUMMEL,D.SCHOMBURG REMARK 1 TITL THE CRYSTAL STRUCTURE OF R-SPECIFIC ALCOHOL DEHYDROGENASE REMARK 1 TITL 2 FROM LACTOBACILLUS BREVIS SUGGESTS THE STRUCTURAL BASIS OF REMARK 1 TITL 3 ITS METAL DEPENDENCY REMARK 1 REF J.MOL.BIOL. V. 327 317 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12628239 REMARK 1 DOI 10.1016/S0022-2836(03)00081-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.NIEFIND,B.RIEBEL,J.MULLER,W.HUMMEL,D.SCHOMBURG REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CHARACTERIZATION OF CRYSTALS REMARK 1 TITL 2 OF R-ALCOHOL DEHYDROGENASE FROM LACTOBACILLS BREVIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1696 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11092950 REMARK 1 DOI 10.1107/S0907444900011860 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 104390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4388 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7203 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.1660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2529 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2247 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3444 ; 1.876 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5269 ; 1.565 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 6.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2910 ; 0.030 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 512 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2593 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1210 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.435 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 125 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 58 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1605 ; 1.491 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2589 ; 2.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 924 ; 2.786 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 855 ; 3.971 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2529 ; 1.554 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 374 ; 5.899 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2470 ; 4.343 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9155 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108778 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 35.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.80700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.45600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.80700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.45600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.80700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.45600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.78000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.80700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.45600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X, Y, Z -X, -Y, Z REMARK 300 -X, Y, -Z X, -Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1252 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1545 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1556 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1557 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1626 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 141 O HOH A 1383 1.27 REMARK 500 O HOH A 1484 O HOH A 1485 1.74 REMARK 500 O HOH A 1595 O HOH A 1640 1.88 REMARK 500 O HOH A 1358 O HOH A 1639 1.94 REMARK 500 OD2 ASP A 54 O HOH A 1564 2.04 REMARK 500 O HOH A 1555 O HOH A 1641 2.16 REMARK 500 O HOH A 1595 O HOH A 1596 2.18 REMARK 500 O MET A 140 O HOH A 1422 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 54 OD2 ASP A 54 2565 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE A 146 CB - CG - CD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 12.42 59.91 REMARK 500 GLU A 44 -46.87 -24.57 REMARK 500 SER A 141 -139.25 -136.46 REMARK 500 SER A 142 153.66 68.29 REMARK 500 LYS A 210 -72.98 -105.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1252 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 251 O REMARK 620 2 GLN A 251 O 178.9 REMARK 620 3 HOH A1558 O 91.6 88.4 REMARK 620 4 HOH A1558 O 88.4 91.6 179.6 REMARK 620 5 HOH A1626 O 89.4 89.4 90.2 90.2 REMARK 620 6 HOH A1626 O 89.4 89.4 90.2 90.2 0.0 REMARK 620 7 HOH A1627 O 107.6 73.4 76.4 103.1 158.3 158.3 REMARK 620 8 HOH A1627 O 73.4 107.6 103.1 76.4 158.3 158.3 43.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SS2 A 1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 1270 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NXQ RELATED DB: PDB REMARK 900 ROOM TEMPERATURE STRUCTURE OF THE APO-FORM OF THE SAME PROTEIN REMARK 900 (WILDTYPE) REMARK 900 RELATED ID: 1ZJZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN (MUTANT G37D) IN COMPLEX WITH REMARK 900 PHENYLETHANOL AND NAD REMARK 900 RELATED ID: 1ZK0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN (MUTANT G37D) IN COMPLEX WITH REMARK 900 PHENYLETHANOL AND NADH REMARK 900 RELATED ID: 1ZK1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN (MUTANT G37D) IN COMPLEX WITH REMARK 900 PHENYLETHANOL AND NAD REMARK 900 RELATED ID: 1ZK2 RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL STRUCTURE OF THE APO-FORM OF THE SAME PROTEIN REMARK 900 (MUTANT G37D) REMARK 900 RELATED ID: 1ZK3 RELATED DB: PDB REMARK 900 TRICLINIC CRYSTAL STRUCTURE OF THE APO-FORM OF THE SAME PROTEIN REMARK 900 (MUTANT G37D) REMARK 900 RELATED ID: 1ZK4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN (WILDTYPE) IN COMPLEX WITH REMARK 900 ACETOPHENONE AND NADP DBREF 1ZJY A 1 251 UNP Q84EX5 Q84EX5_LACBR 2 252 SEQADV 1ZJY ASP A 37 UNP Q84EX5 GLY 38 ENGINEERED MUTATION SEQRES 1 A 251 SER ASN ARG LEU ASP GLY LYS VAL ALA ILE ILE THR GLY SEQRES 2 A 251 GLY THR LEU GLY ILE GLY LEU ALA ILE ALA THR LYS PHE SEQRES 3 A 251 VAL GLU GLU GLY ALA LYS VAL MET ILE THR ASP ARG HIS SEQRES 4 A 251 SER ASP VAL GLY GLU LYS ALA ALA LYS SER VAL GLY THR SEQRES 5 A 251 PRO ASP GLN ILE GLN PHE PHE GLN HIS ASP SER SER ASP SEQRES 6 A 251 GLU ASP GLY TRP THR LYS LEU PHE ASP ALA THR GLU LYS SEQRES 7 A 251 ALA PHE GLY PRO VAL SER THR LEU VAL ASN ASN ALA GLY SEQRES 8 A 251 ILE ALA VAL ASN LYS SER VAL GLU GLU THR THR THR ALA SEQRES 9 A 251 GLU TRP ARG LYS LEU LEU ALA VAL ASN LEU ASP GLY VAL SEQRES 10 A 251 PHE PHE GLY THR ARG LEU GLY ILE GLN ARG MET LYS ASN SEQRES 11 A 251 LYS GLY LEU GLY ALA SER ILE ILE ASN MET SER SER ILE SEQRES 12 A 251 GLU GLY PHE VAL GLY ASP PRO SER LEU GLY ALA TYR ASN SEQRES 13 A 251 ALA SER LYS GLY ALA VAL ARG ILE MET SER LYS SER ALA SEQRES 14 A 251 ALA LEU ASP CYS ALA LEU LYS ASP TYR ASP VAL ARG VAL SEQRES 15 A 251 ASN THR VAL HIS PRO GLY TYR ILE LYS THR PRO LEU VAL SEQRES 16 A 251 ASP ASP LEU PRO GLY ALA GLU GLU ALA MET SER GLN ARG SEQRES 17 A 251 THR LYS THR PRO MET GLY HIS ILE GLY GLU PRO ASN ASP SEQRES 18 A 251 ILE ALA TYR ILE CYS VAL TYR LEU ALA SER ASN GLU SER SEQRES 19 A 251 LYS PHE ALA THR GLY SER GLU PHE VAL VAL ASP GLY GLY SEQRES 20 A 251 TYR THR ALA GLN HET MG A1252 1 HET SS2 A1260 9 HET NAI A1270 44 HETNAM MG MAGNESIUM ION HETNAM SS2 (1R)-1-PHENYLETHANOL HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN SS2 1-PHENYLETHANOL HETSYN NAI NADH FORMUL 2 MG MG 2+ FORMUL 3 SS2 C8 H10 O FORMUL 4 NAI C21 H29 N7 O14 P2 FORMUL 5 HOH *375(H2 O) HELIX 1 1 LEU A 16 GLU A 29 1 14 HELIX 2 2 SER A 40 GLY A 51 1 12 HELIX 3 3 ASP A 65 GLY A 81 1 17 HELIX 4 4 SER A 97 THR A 101 5 5 HELIX 5 5 THR A 102 LEU A 114 1 13 HELIX 6 6 LEU A 114 LYS A 129 1 16 HELIX 7 7 SER A 142 PHE A 146 5 5 HELIX 8 8 LEU A 152 LYS A 176 1 25 HELIX 9 9 THR A 192 ASP A 197 1 6 HELIX 10 10 GLY A 200 GLN A 207 1 8 HELIX 11 11 GLU A 218 SER A 231 1 14 HELIX 12 12 ASN A 232 LYS A 235 5 4 HELIX 13 13 GLY A 247 GLN A 251 5 5 SHEET 1 A 7 ILE A 56 GLN A 60 0 SHEET 2 A 7 LYS A 32 ASP A 37 1 N ILE A 35 O GLN A 57 SHEET 3 A 7 VAL A 8 ILE A 11 1 N ALA A 9 O LYS A 32 SHEET 4 A 7 THR A 85 ASN A 88 1 O VAL A 87 N ILE A 10 SHEET 5 A 7 ALA A 135 MET A 140 1 O ILE A 138 N LEU A 86 SHEET 6 A 7 VAL A 180 PRO A 187 1 O ARG A 181 N ILE A 137 SHEET 7 A 7 GLU A 241 VAL A 244 1 O PHE A 242 N HIS A 186 LINK O GLN A 251 MG MG A1252 1555 1555 2.06 LINK O GLN A 251 MG MG A1252 4555 1555 2.06 LINK MG MG A1252 O HOH A1558 1555 1555 2.07 LINK MG MG A1252 O HOH A1558 1555 4555 2.07 LINK MG MG A1252 O HOH A1626 1555 1555 2.05 LINK MG MG A1252 O HOH A1626 1555 4555 2.05 LINK MG MG A1252 O HOH A1627 1555 1555 2.20 LINK MG MG A1252 O HOH A1627 1555 4555 2.20 SITE 1 AC1 4 GLN A 251 HOH A1558 HOH A1626 HOH A1627 SITE 1 AC2 4 ALA A 93 ASN A 95 TYR A 155 HOH A1644 SITE 1 AC3 24 GLY A 13 THR A 15 LEU A 16 GLY A 17 SITE 2 AC3 24 ILE A 18 GLY A 19 ASP A 37 ARG A 38 SITE 3 AC3 24 HIS A 61 ASP A 62 SER A 63 ASN A 89 SITE 4 AC3 24 ALA A 90 GLY A 91 ILE A 92 TYR A 155 SITE 5 AC3 24 LYS A 159 GLY A 188 ILE A 190 LEU A 194 SITE 6 AC3 24 HOH A1383 HOH A1617 HOH A1642 HOH A1643 CRYST1 55.560 79.614 112.912 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008856 0.00000