HEADER TOXIN 06-MAY-05 1ZLE TITLE CRYSTAL STRUCTURE OF A RGD-CONTAINING HOST-SELECTIVE TOXIN: TITLE 2 PYRENOPHORA TRITICI-REPENTIS PTR TOXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTR NECROSIS TOXIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: PTR TOXA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYRENOPHORA TRITICI-REPENTIS; SOURCE 3 ORGANISM_TAXID: 45151 KEYWDS BETA-SANDWICH; RGD-MOTIF, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.N.SARMA,V.A.MANNING,L.M.CIUFFETTI,P.A.KARPLUS REVDAT 4 25-DEC-19 1ZLE 1 SEQADV SEQRES LINK REVDAT 3 24-FEB-09 1ZLE 1 VERSN REVDAT 2 07-FEB-06 1ZLE 1 JRNL REVDAT 1 16-AUG-05 1ZLE 0 JRNL AUTH G.N.SARMA,V.A.MANNING,L.M.CIUFFETTI,P.A.KARPLUS JRNL TITL STRUCTURE OF PTR TOXA: AN RGD-CONTAINING HOST-SELECTIVE JRNL TITL 2 TOXIN FROM PYRENOPHORA TRITICI-REPENTIS JRNL REF PLANT CELL V. 17 3190 2005 JRNL REFN ISSN 1040-4651 JRNL PMID 16214901 JRNL DOI 10.1105/TPC.105.034918 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.008 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.100 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% PEG 400 (V/V), 0.2 M NICKEL REMARK 280 CHLORIDE, 0.1 M HEPES-NA, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.66500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.33250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.99750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.66500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.99750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.33250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI B1001 LIES ON A SPECIAL POSITION. REMARK 375 NI NI B1004 LIES ON A SPECIAL POSITION. REMARK 375 NI NI C1002 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1019 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1011 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1046 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 SER A 66 REMARK 465 ILE A 67 REMARK 465 THR A 68 REMARK 465 ILE A 69 REMARK 465 ASN A 70 REMARK 465 PRO A 71 REMARK 465 SER A 72 REMARK 465 ARG A 73 REMARK 465 PRO A 74 REMARK 465 SER A 75 REMARK 465 VAL A 76 REMARK 465 ASN A 77 REMARK 465 ASN A 78 REMARK 465 ILE A 79 REMARK 465 MET B 65 REMARK 465 SER B 66 REMARK 465 ILE B 67 REMARK 465 THR B 68 REMARK 465 ILE B 69 REMARK 465 ASN B 70 REMARK 465 PRO B 71 REMARK 465 SER B 72 REMARK 465 ARG B 73 REMARK 465 MET C 65 REMARK 465 SER C 66 REMARK 465 ILE C 67 REMARK 465 THR C 68 REMARK 465 ILE C 69 REMARK 465 ASN C 70 REMARK 465 PRO C 71 REMARK 465 SER C 72 REMARK 465 ARG C 73 REMARK 465 PRO C 74 REMARK 465 SER C 75 REMARK 465 VAL C 76 REMARK 465 ASN C 77 REMARK 465 ASN C 78 REMARK 465 ILE C 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 77 73.42 -111.08 REMARK 500 ASN B 127 -158.93 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1003 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASP A 83 OD2 128.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1001 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1019 O REMARK 620 2 ASP B 83 OD2 144.4 REMARK 620 3 HOH B1019 O 0.6 144.6 REMARK 620 4 ASP B 83 OD2 145.0 70.5 144.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1006 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1027 O REMARK 620 2 HOH A1050 O 78.5 REMARK 620 3 HOH C1034 O 178.8 101.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C1002 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 83 OD2 REMARK 620 2 ASP C 83 OD2 70.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1008 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLD RELATED DB: PDB REMARK 900 SAME PROTEIN IN A DIFFERENT CRYSTAL FORM DBREF 1ZLE A 61 178 UNP P78737 P78737_9PLEO 61 178 DBREF 1ZLE B 61 178 UNP P78737 P78737_9PLEO 61 178 DBREF 1ZLE C 61 178 UNP P78737 P78737_9PLEO 61 178 SEQRES 1 A 118 PCA GLY SER CYS MET SER ILE THR ILE ASN PRO SER ARG SEQRES 2 A 118 PRO SER VAL ASN ASN ILE GLY GLN VAL ASP ILE ASP SER SEQRES 3 A 118 VAL ILE LEU GLY ARG PRO GLY ALA ILE GLY SER TRP GLU SEQRES 4 A 118 LEU ASN ASN PHE ILE THR ILE GLY LEU ASN ARG VAL ASN SEQRES 5 A 118 ALA ASP THR VAL ARG VAL ASN ILE ARG ASN THR GLY ARG SEQRES 6 A 118 THR ASN ARG LEU ILE ILE THR GLN TRP ASP ASN THR VAL SEQRES 7 A 118 THR ARG GLY ASP VAL TYR GLU LEU PHE GLY ASP TYR ALA SEQRES 8 A 118 LEU ILE GLN GLY ARG GLY SER PHE CYS LEU ASN ILE ARG SEQRES 9 A 118 SER ASP THR GLY ARG GLU ASN TRP ARG MET GLN LEU GLU SEQRES 10 A 118 ASN SEQRES 1 B 118 PCA GLY SER CYS MET SER ILE THR ILE ASN PRO SER ARG SEQRES 2 B 118 PRO SER VAL ASN ASN ILE GLY GLN VAL ASP ILE ASP SER SEQRES 3 B 118 VAL ILE LEU GLY ARG PRO GLY ALA ILE GLY SER TRP GLU SEQRES 4 B 118 LEU ASN ASN PHE ILE THR ILE GLY LEU ASN ARG VAL ASN SEQRES 5 B 118 ALA ASP THR VAL ARG VAL ASN ILE ARG ASN THR GLY ARG SEQRES 6 B 118 THR ASN ARG LEU ILE ILE THR GLN TRP ASP ASN THR VAL SEQRES 7 B 118 THR ARG GLY ASP VAL TYR GLU LEU PHE GLY ASP TYR ALA SEQRES 8 B 118 LEU ILE GLN GLY ARG GLY SER PHE CYS LEU ASN ILE ARG SEQRES 9 B 118 SER ASP THR GLY ARG GLU ASN TRP ARG MET GLN LEU GLU SEQRES 10 B 118 ASN SEQRES 1 C 118 PCA GLY SER CYS MET SER ILE THR ILE ASN PRO SER ARG SEQRES 2 C 118 PRO SER VAL ASN ASN ILE GLY GLN VAL ASP ILE ASP SER SEQRES 3 C 118 VAL ILE LEU GLY ARG PRO GLY ALA ILE GLY SER TRP GLU SEQRES 4 C 118 LEU ASN ASN PHE ILE THR ILE GLY LEU ASN ARG VAL ASN SEQRES 5 C 118 ALA ASP THR VAL ARG VAL ASN ILE ARG ASN THR GLY ARG SEQRES 6 C 118 THR ASN ARG LEU ILE ILE THR GLN TRP ASP ASN THR VAL SEQRES 7 C 118 THR ARG GLY ASP VAL TYR GLU LEU PHE GLY ASP TYR ALA SEQRES 8 C 118 LEU ILE GLN GLY ARG GLY SER PHE CYS LEU ASN ILE ARG SEQRES 9 C 118 SER ASP THR GLY ARG GLU ASN TRP ARG MET GLN LEU GLU SEQRES 10 C 118 ASN MODRES 1ZLE PCA A 61 GLN PYROGLUTAMIC ACID MODRES 1ZLE PCA B 61 GLN PYROGLUTAMIC ACID MODRES 1ZLE PCA C 61 GLN PYROGLUTAMIC ACID HET PCA A 61 8 HET PCA B 61 8 HET PCA C 61 8 HET NI A1003 1 HET NI A1005 1 HET NI A1008 1 HET NI B1001 1 HET NI B1004 1 HET NI B1006 1 HET NI B1007 1 HET NI C1002 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NI NICKEL (II) ION FORMUL 1 PCA 3(C5 H7 N O3) FORMUL 4 NI 8(NI 2+) FORMUL 12 HOH *165(H2 O) HELIX 1 1 ILE A 84 LEU A 89 1 6 HELIX 2 2 ILE B 84 LEU B 89 1 6 HELIX 3 3 ILE C 84 LEU C 89 1 6 SHEET 1 A 8 VAL A 82 ASP A 83 0 SHEET 2 A 8 TRP A 172 LEU A 176 -1 O MET A 174 N VAL A 82 SHEET 3 A 8 ASN A 127 THR A 137 -1 N THR A 132 O ARG A 173 SHEET 4 A 8 GLY A 141 LEU A 152 -1 O TYR A 150 N LEU A 129 SHEET 5 A 8 GLY C 155 ASN C 162 1 O SER C 158 N LEU A 146 SHEET 6 A 8 THR C 115 ASN C 122 -1 N VAL C 118 O PHE C 159 SHEET 7 A 8 ILE C 104 ARG C 110 -1 N ASN C 109 O ARG C 117 SHEET 8 A 8 ILE C 95 GLU C 99 -1 N GLY C 96 O LEU C 108 SHEET 1 B 8 ILE A 95 GLU A 99 0 SHEET 2 B 8 ILE A 104 ARG A 110 -1 O ILE A 106 N TRP A 98 SHEET 3 B 8 THR A 115 ASN A 122 -1 O ASN A 119 N GLY A 107 SHEET 4 B 8 GLY A 155 ASN A 162 -1 O PHE A 159 N VAL A 118 SHEET 5 B 8 GLY B 141 LEU B 152 1 O LEU B 146 N SER A 158 SHEET 6 B 8 ASN B 127 THR B 137 -1 N LEU B 129 O TYR B 150 SHEET 7 B 8 TRP B 172 LEU B 176 -1 O ARG B 173 N THR B 132 SHEET 8 B 8 VAL B 82 ASP B 83 -1 N VAL B 82 O MET B 174 SHEET 1 C 9 SER B 75 VAL B 76 0 SHEET 2 C 9 ILE B 95 GLU B 99 1 O GLU B 99 N VAL B 76 SHEET 3 C 9 ILE B 104 ARG B 110 -1 O ILE B 106 N TRP B 98 SHEET 4 C 9 THR B 115 ASN B 122 -1 O ARG B 117 N ASN B 109 SHEET 5 C 9 GLY B 155 ASN B 162 -1 O PHE B 159 N VAL B 118 SHEET 6 C 9 GLY C 141 LEU C 152 1 O TYR C 144 N SER B 158 SHEET 7 C 9 ASN C 127 THR C 137 -1 N LEU C 129 O TYR C 150 SHEET 8 C 9 TRP C 172 LEU C 176 -1 O ARG C 173 N THR C 132 SHEET 9 C 9 VAL C 82 ASP C 83 -1 N VAL C 82 O MET C 174 LINK C PCA A 61 N GLY A 62 1555 1555 1.33 LINK NI NI A1003 OD2 ASP A 85 1555 1555 2.73 LINK NI NI A1003 OD2 ASP A 83 1555 1555 2.62 LINK NI NI A1008 O ASN A 178 1555 1555 2.58 LINK C PCA B 61 N GLY B 62 1555 1555 1.33 LINK NI NI B1001 O HOH B1019 1555 1555 1.96 LINK NI NI B1001 OD2 ASP B 83 1555 1555 2.56 LINK NI NI B1006 O HOH A1027 1555 1555 2.20 LINK NI NI B1006 O HOH A1050 1555 1555 2.23 LINK NI NI B1006 O HOH C1034 1555 1555 2.53 LINK NI NI B1007 OD1 ASP B 135 1555 1555 2.05 LINK C PCA C 61 N GLY C 62 1555 1555 1.33 LINK NI NI C1002 OD2 ASP C 83 1555 1555 2.65 LINK NI NI B1001 O HOH B1019 1555 6553 1.96 LINK NI NI B1001 OD2 ASP B 83 1555 6553 2.56 LINK NI NI C1002 OD2 ASP C 83 1555 5754 2.66 SITE 1 AC1 2 ASP B 83 HOH B1019 SITE 1 AC2 1 ASP C 83 SITE 1 AC3 4 ASP A 83 ASP A 85 ASN A 171 ARG A 173 SITE 1 AC4 1 GLU B 99 SITE 1 AC5 4 HOH A1027 HOH A1050 ASP B 149 HOH C1034 SITE 1 AC6 1 ASP B 135 SITE 1 AC7 3 ASN A 101 LEU A 176 ASN A 178 CRYST1 74.500 74.500 137.330 90.00 90.00 90.00 P 41 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007282 0.00000 HETATM 1 N PCA A 61 47.191 14.401 -84.093 1.00 42.86 N ANISOU 1 N PCA A 61 6124 4599 5561 364 -925 -267 N HETATM 2 CA PCA A 61 46.131 14.151 -85.078 1.00 37.48 C ANISOU 2 CA PCA A 61 5365 3928 4948 289 -918 -294 C HETATM 3 CB PCA A 61 46.713 14.148 -86.492 1.00 38.87 C ANISOU 3 CB PCA A 61 5466 4151 5153 474 -995 -395 C HETATM 4 CG PCA A 61 48.213 13.984 -86.337 1.00 37.94 C ANISOU 4 CG PCA A 61 5410 4017 4989 654 -1079 -449 C HETATM 5 CD PCA A 61 48.413 14.118 -84.848 1.00 54.56 C ANISOU 5 CD PCA A 61 7610 6079 7042 584 -1048 -366 C HETATM 6 OE PCA A 61 49.523 13.990 -84.329 1.00 55.32 O ANISOU 6 OE PCA A 61 7765 6164 7089 709 -1127 -400 O HETATM 7 C PCA A 61 45.458 12.813 -84.826 1.00 58.62 C ANISOU 7 C PCA A 61 8234 6423 7618 120 -1005 -258 C HETATM 8 O PCA A 61 46.137 11.785 -84.712 1.00 45.84 O ANISOU 8 O PCA A 61 6838 4618 5963 185 -1162 -257 O