HEADER TRANSCRIPTION/DNA 06-MAY-05 1ZLK TITLE CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC RESPONSE TITLE 2 REGULATOR DOSR C-TERMINAL DOMAIN-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*CP*CP*CP*GP*CP*GP*CP*TP*TP*TP*GP*GP*GP*GP*AP*CP COMPND 3 *TP*AP*AP*AP*GP*TP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*GP*GP*CP*CP*AP*CP*GP COMPND 4 *AP*T)-3'; COMPND 5 CHAIN: C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*GP*TP*GP*GP*CP*CP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*AP COMPND 9 *CP*TP*TP*TP*AP*GP*TP*CP*CP*CP*CP*AP*AP*AP*GP*CP*GP*CP*GP*GP*GP*CP*CP COMPND 10 *AP*T)-3'; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DORMANCY SURVIVAL REGULATOR; COMPND 15 CHAIN: A, B; COMPND 16 FRAGMENT: C-TERMINAL DOMAIN; COMPND 17 SYNONYM: DOSR; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 7 ORGANISM_TAXID: 1773; SOURCE 8 GENE: DOSR, DEVR, RV3133C; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28(+) KEYWDS HELIX-TURN-HELIX, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.WISEDCHAISRI,M.WU,A.E.RICE,D.M.ROBERTS,D.R.SHERMAN,W.G.J.HOL REVDAT 3 23-AUG-23 1ZLK 1 SEQADV REVDAT 2 24-FEB-09 1ZLK 1 VERSN REVDAT 1 31-JAN-06 1ZLK 0 JRNL AUTH G.WISEDCHAISRI,M.WU,A.E.RICE,D.M.ROBERTS,D.R.SHERMAN, JRNL AUTH 2 W.G.J.HOL JRNL TITL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS DOSR AND DOSR-DNA JRNL TITL 2 COMPLEX INVOLVED IN GENE ACTIVATION DURING ADAPTATION TO JRNL TITL 3 HYPOXIC LATENCY. JRNL REF J.MOL.BIOL. V. 354 630 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16246368 JRNL DOI 10.1016/J.JMB.2005.09.048 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 7800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4270 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.5690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1010 REMARK 3 NUCLEIC ACID ATOMS : 1008 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : -4.00000 REMARK 3 B33 (A**2) : 8.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.996 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.499 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.394 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2148 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1471 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3104 ; 1.086 ; 2.565 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3503 ; 0.841 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 4.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1622 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 206 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 524 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1961 ; 0.258 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1001 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.227 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.254 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.262 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.087 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 145 A 209 2 REMARK 3 1 B 145 B 209 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 C (A): 384 ; 0.05 ; 0.10 REMARK 3 MEDIUM POSITIONAL 1 C (A): 619 ; 0.19 ; 0.40 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 14 C 19 4 REMARK 3 1 D 14 D 19 4 REMARK 3 2 C 22 C 27 4 REMARK 3 2 D 22 D 27 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 360 ; 0.14 ; 0.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96411 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8211 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, HEPES, CALCIUM CHLORIDE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.19850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.19850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS 2 BIOLOGICAL PROTEIN MONOMERS REMARK 300 FORMING ONE FUNCTIONAL DIMER BOUND TO DOUBLE-STRANDED REMARK 300 OLIGONUCLEOTIDE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG C 1 REMARK 465 DG C 2 REMARK 465 DC C 3 REMARK 465 DC C 4 REMARK 465 DC C 5 REMARK 465 DG C 6 REMARK 465 DC C 7 REMARK 465 DC C 32 REMARK 465 DC C 33 REMARK 465 DT C 34 REMARK 465 DG C 35 REMARK 465 DG C 36 REMARK 465 DC C 37 REMARK 465 DC C 38 REMARK 465 DA C 39 REMARK 465 DC C 40 REMARK 465 DG C 41 REMARK 465 DA C 42 REMARK 465 DT C 43 REMARK 465 DC D 0 REMARK 465 DG D 1 REMARK 465 DT D 2 REMARK 465 DG D 3 REMARK 465 DG D 4 REMARK 465 DC D 5 REMARK 465 DC D 6 REMARK 465 DG D 32 REMARK 465 DC D 33 REMARK 465 DG D 34 REMARK 465 DC D 35 REMARK 465 DG D 36 REMARK 465 DG D 37 REMARK 465 DG D 38 REMARK 465 DC D 39 REMARK 465 DC D 40 REMARK 465 DA D 41 REMARK 465 DT D 42 REMARK 465 MET A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 LEU A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 ARG A 139 REMARK 465 GLY A 140 REMARK 465 SER A 141 REMARK 465 HIS A 142 REMARK 465 MET A 143 REMARK 465 GLN A 144 REMARK 465 SER A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 MET B 123 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 SER B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 SER B 133 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 LEU B 136 REMARK 465 VAL B 137 REMARK 465 PRO B 138 REMARK 465 ARG B 139 REMARK 465 GLY B 140 REMARK 465 SER B 141 REMARK 465 HIS B 142 REMARK 465 MET B 143 REMARK 465 GLN B 144 REMARK 465 SER B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 GLY B 214 REMARK 465 ASP B 215 REMARK 465 GLY B 216 REMARK 465 PRO B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 17 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 26 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 26 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC C 27 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 28 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC D 26 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC D 27 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC D 28 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 151 -174.27 -61.98 REMARK 500 THR B 151 -173.30 -64.48 REMARK 500 ASP B 152 -70.67 -45.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HYPOXIC REMARK 900 RESPONSE REGULATOR DOSR C-TERMINAL DOMAIN DBREF 1ZLK A 144 217 GB 15610269 NP_217649 144 217 DBREF 1ZLK B 144 217 GB 15610269 NP_217649 144 217 DBREF 1ZLK C 1 43 PDB 1ZLK 1ZLK 1 43 DBREF 1ZLK D 0 42 PDB 1ZLK 1ZLK 0 42 SEQADV 1ZLK MET A 123 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY A 124 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER A 125 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER A 126 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK HIS A 127 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS A 128 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS A 129 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS A 130 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS A 131 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS A 132 GB 15610269 EXPRESSION TAG SEQADV 1ZLK SER A 133 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER A 134 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY A 135 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK LEU A 136 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK VAL A 137 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK PRO A 138 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK ARG A 139 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY A 140 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER A 141 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK HIS A 142 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK MET A 143 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK MET B 123 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY B 124 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER B 125 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER B 126 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK HIS B 127 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS B 128 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS B 129 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS B 130 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS B 131 GB 15610269 EXPRESSION TAG SEQADV 1ZLK HIS B 132 GB 15610269 EXPRESSION TAG SEQADV 1ZLK SER B 133 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER B 134 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY B 135 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK LEU B 136 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK VAL B 137 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK PRO B 138 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK ARG B 139 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK GLY B 140 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK SER B 141 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK HIS B 142 GB 15610269 CLONING ARTIFACT SEQADV 1ZLK MET B 143 GB 15610269 CLONING ARTIFACT SEQRES 1 C 43 DG DG DC DC DC DG DC DG DC DT DT DT DG SEQRES 2 C 43 DG DG DG DA DC DT DA DA DA DG DT DC DC SEQRES 3 C 43 DC DT DA DA DC DC DC DT DG DG DC DC DA SEQRES 4 C 43 DC DG DA DT SEQRES 1 D 43 DC DG DT DG DG DC DC DA DG DG DG DT DT SEQRES 2 D 43 DA DG DG DG DA DC DT DT DT DA DG DT DC SEQRES 3 D 43 DC DC DC DA DA DA DG DC DG DC DG DG DG SEQRES 4 D 43 DC DC DA DT SEQRES 1 A 95 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 95 LEU VAL PRO ARG GLY SER HIS MET GLN ASP PRO LEU SER SEQRES 3 A 95 GLY LEU THR ASP GLN GLU ARG THR LEU LEU GLY LEU LEU SEQRES 4 A 95 SER GLU GLY LEU THR ASN LYS GLN ILE ALA ASP ARG MET SEQRES 5 A 95 PHE LEU ALA GLU LYS THR VAL LYS ASN TYR VAL SER ARG SEQRES 6 A 95 LEU LEU ALA LYS LEU GLY MET GLU ARG ARG THR GLN ALA SEQRES 7 A 95 ALA VAL PHE ALA THR GLU LEU LYS ARG SER ARG PRO PRO SEQRES 8 A 95 GLY ASP GLY PRO SEQRES 1 B 95 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 95 LEU VAL PRO ARG GLY SER HIS MET GLN ASP PRO LEU SER SEQRES 3 B 95 GLY LEU THR ASP GLN GLU ARG THR LEU LEU GLY LEU LEU SEQRES 4 B 95 SER GLU GLY LEU THR ASN LYS GLN ILE ALA ASP ARG MET SEQRES 5 B 95 PHE LEU ALA GLU LYS THR VAL LYS ASN TYR VAL SER ARG SEQRES 6 B 95 LEU LEU ALA LYS LEU GLY MET GLU ARG ARG THR GLN ALA SEQRES 7 B 95 ALA VAL PHE ALA THR GLU LEU LYS ARG SER ARG PRO PRO SEQRES 8 B 95 GLY ASP GLY PRO HELIX 1 1 LEU A 160 GLY A 164 5 5 HELIX 2 2 THR A 166 ARG A 173 1 8 HELIX 3 3 ALA A 177 GLY A 193 1 17 HELIX 4 4 ARG A 196 ARG A 209 1 14 HELIX 5 5 ARG B 155 LEU B 160 1 6 HELIX 6 6 LEU B 161 GLY B 164 5 4 HELIX 7 7 THR B 166 ARG B 173 1 8 HELIX 8 8 ALA B 177 GLY B 193 1 17 HELIX 9 9 ARG B 196 ARG B 209 1 14 CRYST1 142.397 58.791 82.933 90.00 125.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007023 0.000000 0.005009 0.00000 SCALE2 0.000000 0.017009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014811 0.00000