HEADER LYASE 08-MAY-05 1ZLP TITLE PETAL DEATH PROTEIN PSR132 WITH CYSTEINE-LINKED GLUTARALDEHYDE FORMING TITLE 2 A THIOHEMIACETAL ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PETAL DEATH PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PSR132; COMPND 5 EC: 4.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIANTHUS CARYOPHYLLUS; SOURCE 3 ORGANISM_COMMON: CLOVE PINK; SOURCE 4 ORGANISM_TAXID: 3570; SOURCE 5 GENE: PSR132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSR132-PET3A KEYWDS TIM-BARREL, HELIX SWAPPING,2-ETHYL-3-METHYLMALATE LYASE, 2-PROPYL-3- KEYWDS 2 METHYLMALATE LYASE, LYASE/PEP MUTASE SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,S.LIU,Z.LU,A.HOWARD,D.DUNAWAY-MARIANO,O.HERZBERG REVDAT 3 13-JUL-11 1ZLP 1 VERSN REVDAT 2 24-FEB-09 1ZLP 1 VERSN REVDAT 1 03-JAN-06 1ZLP 0 JRNL AUTH A.TEPLYAKOV,S.LIU,Z.LU,A.HOWARD,D.DUNAWAY-MARIANO,O.HERZBERG JRNL TITL CRYSTAL STRUCTURE OF THE PETAL DEATH PROTEIN FROM CARNATION JRNL TITL 2 FLOWER. JRNL REF BIOCHEMISTRY V. 44 16377 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16342930 JRNL DOI 10.1021/BI051779Y REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 63.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.46000 REMARK 3 B22 (A**2) : -10.46000 REMARK 3 B33 (A**2) : 15.69000 REMARK 3 B12 (A**2) : -5.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.462 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4420 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5959 ; 1.421 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;39.409 ;23.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 763 ;21.135 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 679 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3286 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2343 ; 0.298 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2988 ; 0.339 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 148 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2863 ; 3.401 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4496 ; 5.356 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1701 ;10.131 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1463 ;12.772 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -48.4217 58.2884 4.3327 REMARK 3 T TENSOR REMARK 3 T11: -0.0632 T22: -0.0942 REMARK 3 T33: -0.5958 T12: -0.0342 REMARK 3 T13: -0.0571 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 5.0818 L22: 3.8165 REMARK 3 L33: 1.1935 L12: -0.5314 REMARK 3 L13: 1.4192 L23: 0.2998 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.3151 S13: -0.3210 REMARK 3 S21: -0.3782 S22: -0.0444 S23: 0.3133 REMARK 3 S31: 0.1506 S32: -0.0209 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 311 REMARK 3 ORIGIN FOR THE GROUP (A): -45.1272 96.7189 0.7063 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: -0.0626 REMARK 3 T33: 0.2039 T12: -0.0461 REMARK 3 T13: -0.0861 T23: 0.2238 REMARK 3 L TENSOR REMARK 3 L11: 4.1273 L22: 2.2625 REMARK 3 L33: 1.5270 L12: 0.3919 REMARK 3 L13: -1.2404 L23: -0.3340 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: 0.5800 S13: 1.3368 REMARK 3 S21: -0.4005 S22: 0.1517 S23: 0.6472 REMARK 3 S31: -0.2606 S32: -0.2023 S33: -0.0931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB032865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2755, 0.9792, 0.9799, 0.9724 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : CYLINDRICALLY BENT PT-COATED REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 12% PEG 20K, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.01667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.03333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.03333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -173.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 25.01667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 TYR A 20 REMARK 465 THR A 21 REMARK 465 ALA A 22 REMARK 465 VAL A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 312 REMARK 465 PHE A 313 REMARK 465 THR A 314 REMARK 465 PRO A 315 REMARK 465 LYS A 316 REMARK 465 ALA A 317 REMARK 465 THR A 318 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 ASN B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 465 THR B 12 REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 ALA B 15 REMARK 465 THR B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 TYR B 20 REMARK 465 THR B 21 REMARK 465 ALA B 22 REMARK 465 VAL B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 GLY B 26 REMARK 465 ARG B 27 REMARK 465 PHE B 313 REMARK 465 THR B 314 REMARK 465 PRO B 315 REMARK 465 LYS B 316 REMARK 465 ALA B 317 REMARK 465 THR B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 107 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 181 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 SER A 299 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 -171.04 -171.49 REMARK 500 ASP A 79 80.05 -66.34 REMARK 500 LEU A 102 116.39 -38.29 REMARK 500 CYS A 103 94.58 -57.37 REMARK 500 ASP A 109 -138.05 43.58 REMARK 500 CYS A 144 -169.37 -62.81 REMARK 500 SER A 172 136.44 -37.72 REMARK 500 ASN A 213 -179.38 179.01 REMARK 500 ARG A 282 -48.40 -15.57 REMARK 500 TYR A 304 -33.69 -33.13 REMARK 500 ASP B 48 -170.85 174.55 REMARK 500 PHE B 60 151.01 -44.74 REMARK 500 ASP B 79 63.00 -67.85 REMARK 500 LEU B 102 130.80 -38.84 REMARK 500 ASP B 109 -141.68 47.82 REMARK 500 HIS B 256 64.16 -106.78 REMARK 500 THR B 280 136.50 -173.71 REMARK 500 SER B 299 42.12 78.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 437 DISTANCE = 5.70 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE LIGAND IS A COVALENT ADDUCT (THIOHEMIACETAL) REMARK 600 FORMED BETWEEN GLUTARALDEHYDE (AKA 1,5-PENTANEDIAL REMARK 600 OR 1,5-PENTANEDIONE, OR 5-OXO-PENTANAL) AND THE REMARK 600 THIOL GROUP OF CYS144. REMARK 600 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 LYS A 142 NZ 114.4 REMARK 620 3 ASP A 109 OD1 82.3 48.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAQ A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAQ B 402 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE FUNCTIONAL ANNOTATION OF REMARK 999 THE SWS ENTRY BASED ON SEQUENCE HOMOLOGY AS CARBOXYPEP REMARK 999 MUTASE IS WRONG. DBREF 1ZLP A 1 318 UNP Q05957 CPPM_DIACA 1 318 DBREF 1ZLP B 1 318 UNP Q05957 CPPM_DIACA 1 318 SEQRES 1 A 318 MET ALA PRO PRO ASN GLY THR THR ASN GLY GLU THR GLU SEQRES 2 A 318 VAL ALA THR GLN GLY SER TYR THR ALA VAL SER THR GLY SEQRES 3 A 318 ARG LYS THR THR MET HIS ARG LEU ILE GLU GLU HIS GLY SEQRES 4 A 318 SER VAL LEU MET PRO GLY VAL GLN ASP ALA LEU SER ALA SEQRES 5 A 318 ALA VAL VAL GLU LYS THR GLY PHE HIS ALA ALA PHE VAL SEQRES 6 A 318 SER GLY TYR SER VAL SER ALA ALA MET LEU GLY LEU PRO SEQRES 7 A 318 ASP PHE GLY LEU LEU THR THR THR GLU VAL VAL GLU ALA SEQRES 8 A 318 THR ARG ARG ILE THR ALA ALA ALA PRO ASN LEU CYS VAL SEQRES 9 A 318 VAL VAL ASP GLY ASP THR GLY GLY GLY GLY PRO LEU ASN SEQRES 10 A 318 VAL GLN ARG PHE ILE ARG GLU LEU ILE SER ALA GLY ALA SEQRES 11 A 318 LYS GLY VAL PHE LEU GLU ASP GLN VAL TRP PRO LYS LYS SEQRES 12 A 318 CYS GLY HIS MET ARG GLY LYS ALA VAL VAL PRO ALA GLU SEQRES 13 A 318 GLU HIS ALA LEU LYS ILE ALA ALA ALA ARG GLU ALA ILE SEQRES 14 A 318 GLY ASP SER ASP PHE PHE LEU VAL ALA ARG THR ASP ALA SEQRES 15 A 318 ARG ALA PRO HIS GLY LEU GLU GLU GLY ILE ARG ARG ALA SEQRES 16 A 318 ASN LEU TYR LYS GLU ALA GLY ALA ASP ALA THR PHE VAL SEQRES 17 A 318 GLU ALA PRO ALA ASN VAL ASP GLU LEU LYS GLU VAL SER SEQRES 18 A 318 ALA LYS THR LYS GLY LEU ARG ILE ALA ASN MET ILE GLU SEQRES 19 A 318 GLY GLY LYS THR PRO LEU HIS THR PRO GLU GLU PHE LYS SEQRES 20 A 318 GLU MET GLY PHE HIS LEU ILE ALA HIS SER LEU THR ALA SEQRES 21 A 318 VAL TYR ALA THR ALA ARG ALA LEU VAL ASN ILE MET LYS SEQRES 22 A 318 ILE LEU LYS GLU LYS GLY THR THR ARG ASP ASP LEU ASP SEQRES 23 A 318 GLN MET ALA THR PHE SER GLU PHE ASN GLU LEU ILE SER SEQRES 24 A 318 LEU GLU SER TRP TYR GLU MET GLU SER LYS PHE LYS ASN SEQRES 25 A 318 PHE THR PRO LYS ALA THR SEQRES 1 B 318 MET ALA PRO PRO ASN GLY THR THR ASN GLY GLU THR GLU SEQRES 2 B 318 VAL ALA THR GLN GLY SER TYR THR ALA VAL SER THR GLY SEQRES 3 B 318 ARG LYS THR THR MET HIS ARG LEU ILE GLU GLU HIS GLY SEQRES 4 B 318 SER VAL LEU MET PRO GLY VAL GLN ASP ALA LEU SER ALA SEQRES 5 B 318 ALA VAL VAL GLU LYS THR GLY PHE HIS ALA ALA PHE VAL SEQRES 6 B 318 SER GLY TYR SER VAL SER ALA ALA MET LEU GLY LEU PRO SEQRES 7 B 318 ASP PHE GLY LEU LEU THR THR THR GLU VAL VAL GLU ALA SEQRES 8 B 318 THR ARG ARG ILE THR ALA ALA ALA PRO ASN LEU CYS VAL SEQRES 9 B 318 VAL VAL ASP GLY ASP THR GLY GLY GLY GLY PRO LEU ASN SEQRES 10 B 318 VAL GLN ARG PHE ILE ARG GLU LEU ILE SER ALA GLY ALA SEQRES 11 B 318 LYS GLY VAL PHE LEU GLU ASP GLN VAL TRP PRO LYS LYS SEQRES 12 B 318 CYS GLY HIS MET ARG GLY LYS ALA VAL VAL PRO ALA GLU SEQRES 13 B 318 GLU HIS ALA LEU LYS ILE ALA ALA ALA ARG GLU ALA ILE SEQRES 14 B 318 GLY ASP SER ASP PHE PHE LEU VAL ALA ARG THR ASP ALA SEQRES 15 B 318 ARG ALA PRO HIS GLY LEU GLU GLU GLY ILE ARG ARG ALA SEQRES 16 B 318 ASN LEU TYR LYS GLU ALA GLY ALA ASP ALA THR PHE VAL SEQRES 17 B 318 GLU ALA PRO ALA ASN VAL ASP GLU LEU LYS GLU VAL SER SEQRES 18 B 318 ALA LYS THR LYS GLY LEU ARG ILE ALA ASN MET ILE GLU SEQRES 19 B 318 GLY GLY LYS THR PRO LEU HIS THR PRO GLU GLU PHE LYS SEQRES 20 B 318 GLU MET GLY PHE HIS LEU ILE ALA HIS SER LEU THR ALA SEQRES 21 B 318 VAL TYR ALA THR ALA ARG ALA LEU VAL ASN ILE MET LYS SEQRES 22 B 318 ILE LEU LYS GLU LYS GLY THR THR ARG ASP ASP LEU ASP SEQRES 23 B 318 GLN MET ALA THR PHE SER GLU PHE ASN GLU LEU ILE SER SEQRES 24 B 318 LEU GLU SER TRP TYR GLU MET GLU SER LYS PHE LYS ASN SEQRES 25 B 318 PHE THR PRO LYS ALA THR HET MG A 401 1 HET MG B 401 1 HET GAQ A 402 7 HET GAQ B 402 7 HETNAM MG MAGNESIUM ION HETNAM GAQ 5-HYDROXYPENTANAL FORMUL 3 MG 2(MG 2+) FORMUL 5 GAQ 2(C5 H10 O2) FORMUL 7 HOH *69(H2 O) HELIX 1 1 THR A 29 HIS A 38 1 10 HELIX 2 2 ASP A 48 THR A 58 1 11 HELIX 3 3 SER A 66 MET A 74 1 9 HELIX 4 4 THR A 84 ALA A 99 1 16 HELIX 5 5 GLY A 114 ALA A 128 1 15 HELIX 6 6 PRO A 154 GLY A 170 1 17 HELIX 7 7 ALA A 182 ALA A 201 1 20 HELIX 8 8 ASN A 213 THR A 224 1 12 HELIX 9 9 THR A 242 GLY A 250 1 9 HELIX 10 10 LEU A 258 GLY A 279 1 22 HELIX 11 11 ASP A 284 MET A 288 5 5 HELIX 12 12 THR A 290 SER A 299 1 10 HELIX 13 13 SER A 299 PHE A 310 1 12 HELIX 14 14 MET B 31 HIS B 38 1 8 HELIX 15 15 ASP B 48 THR B 58 1 11 HELIX 16 16 SER B 66 GLY B 76 1 11 HELIX 17 17 THR B 84 ALA B 99 1 16 HELIX 18 18 GLY B 114 ALA B 128 1 15 HELIX 19 19 PRO B 154 GLY B 170 1 17 HELIX 20 20 ALA B 182 GLY B 202 1 21 HELIX 21 21 ASN B 213 LYS B 223 1 11 HELIX 22 22 THR B 242 GLY B 250 1 9 HELIX 23 23 LEU B 258 GLY B 279 1 22 HELIX 24 24 THR B 290 SER B 299 1 10 HELIX 25 25 SER B 299 PHE B 310 1 12 SHEET 1 A 9 VAL A 41 VAL A 46 0 SHEET 2 A 9 ALA A 62 VAL A 65 1 O PHE A 64 N PRO A 44 SHEET 3 A 9 CYS A 103 ASP A 107 1 O VAL A 105 N ALA A 63 SHEET 4 A 9 GLY A 132 GLU A 136 1 O GLY A 132 N VAL A 106 SHEET 5 A 9 PHE A 175 THR A 180 1 O ARG A 179 N LEU A 135 SHEET 6 A 9 ALA A 205 VAL A 208 1 O PHE A 207 N THR A 180 SHEET 7 A 9 LEU A 227 MET A 232 1 O ILE A 229 N THR A 206 SHEET 8 A 9 LEU A 253 HIS A 256 1 O ALA A 255 N ALA A 230 SHEET 9 A 9 VAL A 41 VAL A 46 1 N GLY A 45 O HIS A 256 SHEET 1 B 9 VAL B 41 VAL B 46 0 SHEET 2 B 9 ALA B 62 VAL B 65 1 O PHE B 64 N VAL B 46 SHEET 3 B 9 CYS B 103 ASP B 107 1 O VAL B 105 N VAL B 65 SHEET 4 B 9 GLY B 132 LEU B 135 1 O GLY B 132 N VAL B 106 SHEET 5 B 9 PHE B 175 THR B 180 1 O ARG B 179 N LEU B 135 SHEET 6 B 9 ALA B 205 VAL B 208 1 O PHE B 207 N THR B 180 SHEET 7 B 9 LEU B 227 ASN B 231 1 O ILE B 229 N THR B 206 SHEET 8 B 9 LEU B 253 HIS B 256 1 N LEU B 253 O ARG B 228 SHEET 9 B 9 VAL B 41 VAL B 46 1 N VAL B 41 O ILE B 254 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.20 LINK OD2 ASP B 107 MG MG B 401 1555 1555 2.18 LINK SG CYS A 144 C1 GAQ A 402 1555 1555 1.68 LINK SG CYS B 144 C1 GAQ B 402 1555 1555 1.66 LINK MG MG A 401 NZ LYS A 142 1555 1555 3.07 LINK MG MG A 401 OD1 ASP A 109 1555 1555 3.05 CISPEP 1 TRP A 140 PRO A 141 0 15.13 CISPEP 2 TRP B 140 PRO B 141 0 1.43 SITE 1 AC1 5 ASP A 79 ASP A 107 ASP A 109 LYS A 142 SITE 2 AC1 5 GAQ A 402 SITE 1 AC2 4 ASP B 79 ASP B 107 LYS B 142 GAQ B 402 SITE 1 AC3 7 CYS A 144 GLY A 145 ARG A 179 ASN A 231 SITE 2 AC3 7 ILE A 233 LEU A 258 MG A 401 SITE 1 AC4 9 TYR B 68 CYS B 144 GLY B 145 ARG B 179 SITE 2 AC4 9 GLU B 209 ASN B 231 ILE B 233 LEU B 258 SITE 3 AC4 9 MG B 401 CRYST1 156.190 156.190 75.050 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006402 0.003696 0.000000 0.00000 SCALE2 0.000000 0.007393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013324 0.00000